ethyl ester[13] (6) (1.0 equiv) were heated at 808C until consumption
of the limiting reagent. Upon completion, EtOAc was added and
the mixture was filtered. The filtrate was concentrated in vacuo
and the residue was purified by flash chromatography using gradi-
ent elution (EtOAc/hexane; 0!40%) to give the title compounds.
tivity against NRP-TB than the compounds lacking the linker
moiety, indicating that the linker may play a role in the activity
against the persistent phenotype. Overall, this work highlights
the fact that the derivatives of 3-isoxazolecarboxylic acid alkyl
esters can be subjected to various modifications at the C-5 po-
sition, with the aim of optimizing physicochemical properties,
in this case ClogP, TPSA, and ALOGpS, while maintaining good
anti-TB activity.
General procedure for the synthesis of 21–23: A stirred solution
of amino derivative 8, 13 or 14 (1 equiv) and formaldehyde (37%
aq solution, 0.5 mLmmolꢀ1
)
in CH3CN (10 mLmmolꢀ1
)
at RT
) were
NaBH3CN (3.3 equiv) and glacial AcOH (0.1 mLmmolꢀ1
added. After 2 h, additional glacial AcOH (0.2 mLmmolꢀ1) was
added and the reaction mixture was stirred at RT until consump-
tion of the limiting reagent. The formed precipitate was filtered,
washed with water, and purified by flash chromatography using
gradient elution (EtOAc/hexane; 0!30%) to give the product.
5-[[[N-2,8-bis(trifluoromethyl)-4-quinolinyl]amino]methyl]-3-isox-
azolecarboxylic acid (24): LiOH·H2O (7 mg, 0.166 mmol) was
added to a solution of 7 (18 mg, 0.042 mmol) in THF/MeOH/H2O
(3:1:1; 5 mL), and the reaction mixture was stirred at RT for 0.5 h.
The organic solvents were removed in vacuo, and the resultant
aqueous solution was diluted with water and acidified with 1n HCl
to pH 5–6. The precipitate was filtered off to give 24 as a white
solid (15 mg, 89%); 1H NMR (400 MHz, CD3OD): d=4.91 (s, 2H),
6.75 (s, 1H), 6.97 (s, 1H), 7.67 (t, J=8.0 Hz, 1H), 8.13 (d, J=8.0 Hz,
1H), 8.43 ppm (d, J=8.0 Hz, 1H); 13C NMR (100 MHz, CD3OD): d=
94.3, 102.3, 124.4, 125.0, 127.8, 143.9, 151.3, 160.6, 170.9 ppm;
HRMS-ESI+: m/z [M+H]+ calcd for C16H9F6N3O3: 406.0611, found:
406.0602.
Experimental Section
The general procedures for the preparation of compounds 5–31
1
are reported below. H NMR, 13C NMR, 19F NMR, HRMS, HPLC purity
and a brief description of the biological assays are provided in the
Supporting Information.
Chemistry: 1H NMR and 13C NMR spectra were recorded on a
Bruker spectrometer at 400 MHz and 100 MHz, respectively, with
TMS as an internal standard. 19F NMR spectra were recorded on
Bruker spectrometer at 376 MHz with trifluoroacetic acid (TFA) as
an external standard. Standard abbreviations indicating multiplicity
are used as follows: s=singlet, d=doublet, dd=doublet of dou-
blets, t=triplet, q=quadruplet, m=multiplet and br=broad.
HRMS experiments were performed on Q-TOF-2TM (Micromass).
TLC was performed on Merck 60 F254 silica gel plates. Column chro-
matography was performed using CombiFlashꢁ Rf system with Re-
diSepꢁ columns or alternatively using Merck silica gel (40–60
mesh). Preparative HPLC was carried out on a Shimadzu SCL-10A
VP instrument with an ACE 5-AQ (21.2 mm ꢂ 150 mm) column.
Analytical HPLC was carried out on Agilent 1100 HPLC system with
a Synergi 4 m Hydro-RP 80A column, on a variable wavelength de-
tector G1314A. Method 1: Flow rate=1.4 mLminꢀ1; gradient elu-
tion over 20 min, from 30% CH3CN/H2O to 100% CH3CN with
0.05% TFA. Method 2: Flow rate=1.4 mLminꢀ1; gradient elution
over 20 min, from 10% CH3CN/H2O to 100% CH3CN with 0.05%
TFA.
Acknowledgements
TB Alliance is acknowledged for financial support. A. Lilienkampf
thanks the Academy of Finland (grant 120441) and the Finnish
Cultural Foundation for fellowships. Brian Becker is acknowl-
edged for protein shift assays.
N-2-propynyl-[2,8-bis(trifluoromethyl)]-4-quinolinylamine (5): A
stirred solution of 4-bromo-2,8-bis(trifluoromethyl)quinoline (0.2 g,
0.58 mmol) in dioxane (5 mL) was treated with propargylamine
(0.074 mL, 1.2 mmol) and the reaction mixture was refluxed over-
night. After cooling to RT, the mixture was poured into ice water
(15 mL), extracted with EtOAc (3ꢂ10 mL), and the organic layers
were washed with brine and dried (Na2SO4). After filtration, the sol-
vent was removed in vacuo and the crude material was purified by
flash chromatography (hexane/EtOAc; 7:3) to give compound 5 as
Keywords: drug design
derivatives · tuberculosis
·
drug discovery
·
isoxazole
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[2] a) J. T. Brooks, J. E. Kaplan, K. K. Holmes, C. Benson, A. Pau, H. Masur,
1
a light yellow powder (88 mg, 45%): H NMR (400 MHz, CDCl3): d=
[4] a) J. D. McKinney, W. R. Jacobs, Jr., B. R. Bloom in Emerging infections
(Biomedical Research Reports), (Ed.: R. M. Krause), Academic press, San
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[6] S. K. Jain, G. Lamichhane, S. Nimmagadda, M. G. Pomper, W. R. Bishai,
Microbe 2008, 3, 285–292.
[8] K. Andries, P. Verhasselt, J. Guillemont, H. W. H. Goehlmann, J.-M. Neefs,
H. Winkler, J. Van Gestel, P. Timmerman, M. Zhu, E. Lee, P. Williams, D. de
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Arain, M. H. Langhorne, S. W. Anderson, J. A. Towell, Y. Yuan, D. N.
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2.39 (t, J=2.1 Hz, 1H), 4.22 (dd, J1 =2.4 Hz, J2 =5.4 Hz, 2H), 5.29 (br
s, 1H), 6.92 (s, 1H), 7.60 (t, J=7.8 Hz, 1H), 7.98 (d, J=8.4 Hz, 1H),
8.09 ppm (d, J=7.2 Hz, 1H).
General procedure for the synthesis of 6, 7, 25–31: The appropri-
ate acetylene intermediate (1 equiv) and Et3N (3 equiv) were dis-
solved in anhyd THF or ether (15 mLmmolꢀ1). Subsequently, ethyl
2-chloro-2-(hydroxyimino)acetate (3 equiv) in anhyd THF or ether
(2 mLmmolꢀ1) was added to the solution via syringe pump over an
8 h period, and the reaction mixture was stirred overnight at RT.
The reaction mixture was filtered, washed with THF, and the filtrate
was concentrated in vacuo. The crude material was purified by
flash chromatography using gradient elution (EtOAc/hexane; 0!
30–80%). Analytical data for compounds 6[13] and 27[17] matched
the data published previously.
General procedure for the synthesis of 8–20: The appropriate
aniline (1.5 equiv) and 5-bromomethyl-3-isoxazolcarboxylic acid
ChemMedChem 2010, 5, 1667 – 1672
ꢀ 2010 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim
1671