Analytical Chemistry
ARTICLE
major advantages. First, we could assay P450 in isolated micro-
chambers, drastically reducing the amount of solution necessary
and increasing the number of assays that can be conducted in
parallel. Second, the observation of initial velocity can minimize
uncertainties caused by the introduction and mixing process of
solutions, leading to significantly reduced errors of obtained
assay data (kinetic constants). These features should facilitate the
evaluation of P450 activities, which are important for a wide
range of pharmaceutical and diagnostic applications. We have
chosen h-CYP1A1 as a model P450, but we can certainly apply
the same methodology to other P450 species, including h-CYP3A4,
and their genetic variants. Genetic variations of P450 play im-
portant roles in the pharmacological effects of drugs to indivi-
duals. The use of caged cofactors opens a new avenue to assay a
large number of P450 variants in a parallel fashion using isolated
microchambers, minimizing the use of P450 enzymes and sub-
strate materials, and improving the accuracy of assay at the same
time. Furthermore, these merits of using caged cofactors can also
be readily transferred to other types of clinically relevant bioassays.
Figure 6. Competitive assay in PDMS microwells: Solutions containing
7ER and benzopyrene were incubated in PDMS microwells together
with h-CYP1A1, caged G6P, and other ingredients. The enzymatic reaction
was started by UV illumination at time zero. Concentration of benzopyrene:
black triangles, 0 μM; red circles, 0.1 μM; green diamonds, 0.2 μM.
plates, in which each microwell has a volume of ∼10 μL.
Microchambers such as demonstrated in the present study require
a much smaller volume of assay solution (∼100 pL). However,
bioassays in such small chambers have not been feasible because
of the fact that reactions already start (and possibly finish) during
the mixing and introduction of the solutions. Although femtoliter
chambers have been used to study single molecule enzymatic
activities,16 the difficulty to introduce the substrate solutions
into each well without starting the reaction prevented the use of
isolated microchambers for high-throughput assays. The use of
caged cofactors opens new possibilities to the parallel assay of
enzymatic activities in isolated microchambers. One can possibly
immobilize different CYPs in microwells on a chip by applying
the printing technology and assay their activities by introducing
the substrate solution and sealing the wells.
’ ASSOCIATED CONTENT
S
Supporting Information. Additional information as noted
b
in text. This material is available free of charge via the Internet at
’ AUTHOR INFORMATION
Corresponding Author
*Kenichi Morigaki: e-mail, morigaki@port.kobe-u.ac.jp; fax, +81-
78-803-5941. Yoshiro Tatsu: e-mail, y-tatsu@aist.go.jp; fax, +81-
29-862-6130. Hiromasa Imaishi: e-mail, himaish@kobe-u.ac.jp;
fax, +81-78-803-5940.
The second important advantage of using caged-G6P is the
fact that one can measure the initial velocity of the enzymatic
reaction. Kinetic models of enzymatic reactions are based on the
initial velocities, but experimentally obtained initial velocities are
often compromised by the lag time due to the sample introduc-
tion and mixing processes. This problem can become critical as
the volume of each sample decreases and the number of samples
increases. Our results suggested that we could obtain enzymatic
kinetic data with a lower data fluctuation by premixing the ingre-
dients and measuring the onset of the reaction. One potential
drawback of the present approach is the possibility that enzy-
matic activity is affected by the UV illumination. However, we
should be able to obtain accurate estimates of relative P450
activities and inhibition by applying the same decaging condi-
tions. (Obtaining accurate values for the relative activities is often
sufficient in the high-throughput screening setting because an
absolute value of enzymatic activities are very difficult to attain
due to many technical obstacles such as the homogeneity of P450
sources.) Furthermore, we should also be able to minimize the
effects of light illumination by designing more efficient photopro-
tective groups (having longer absorption wavelength and higher
quantum yield) and optimizing the illumination conditions.
’ ACKNOWLEDGMENT
This work was financially supported by Program for Promo-
tion of Basic Research Activities for Innovative Biosciences
(PROBRAIN). We thank Ms. Saori Mori, Mr. Takashi Irie
(AIST), and Mr. Yoshinao Mori (Kobe Univ.) for their assistance
in the experiments. We thank Dr. Hidenori Nagai and Dr.
Shinich Wakida (AIST) for supporting us with the fabrication
of PDMS microwells. Discussions with Dr. Kunio Isshiki and
Dr. Akira Arisawa (Mercian Corp.) were appreciated.
’ REFERENCES
(1) Ansede, J. H.; Thakker, D. R. J. Pharm. Sci. 2004, 93, 239–255.
(2) Walsky, R. L.; Boldt, S. E. Curr. Drug Metab. 2008, 9, 928–939.
(3) Sukumaran, S. M.; Potsaid, B.; Lee, M.-Y.; Clark, D. S.; Dordick,
J. S. J. Biomol. Screen. 2009, 14, 668–678.
(4) Marriott, G., Ed. Caged Compounds; Academic Press: London,
1998.
(5) Goeldner, M., Givens, R., Eds. Dynamic Studies in Biology; Wiley-
VCH: Weinheim, Germany, 2005.
(6) Ellis-Davies, G. C. R. Nat. Methods 2007, 4, 619–628.
(7) Ohmuro-Matsuyama, Y.; Tatsu, Y. Angew. Chem., Int. Ed. 2008,
47, 7527–7529.
(8) Guerrero, A.; Nishigaki, T.; Carneiro, J.; Tatsu, Y.; Wood, C. D.;
Darszon, A. Dev. Biol. 2010, 344, 52–65.
’ CONCLUSIONS
(9) Mueller, E. J.; Loida, P. J.; Sligar, S. G. In Cytochrome P450, 2nd
ed.; Ortiz de Montellano, P. R., Ed.; Plenum Press: New York, 1995;
pp 83ꢀ124.
We demonstrated that one can regulate P450 activity with UV
illumination by using caged compounds. This resulted in two
159
dx.doi.org/10.1021/ac202189h |Anal. Chem. 2012, 84, 155–160