The Journal of Organic Chemistry
ARTICLE
1.57-1.67 (m, 1 H), 1.74-1.82 (m, 1 H), 2.69 (s, 3/5 H), 2.78-2.89
(m, 1 H), 2.86 (s, 12/5 H), 3.49-3.61 (m, 4 H), 3.78 (dd, J = 17.5, 6.1
Hz, 1 H), 3.91 (dt, J = 15.0, 7.1 Hz, 1/5 H), 4.01 (q, J = 6.5 Hz, 4/5 H),
4.36-4.40 (m, 2 H), 4.48 (s, 2 H), 4.64-4.73 (m, 6/5 H), 5.11 (dd, J =
10.7, 4.8 Hz, 4/5 H), 7.25-7.34 (m, 6 H), 7.91 (d, J = 8.9 Hz, 1/5 H),
7.98 (d, J = 9.3 Hz, 1/5 H), 8.02 (d, J = 9.1 Hz, 3/5 H), 8.09 (d, J = 7.9
Hz, 1/5 H), 8.18 (d, J = 8.2 Hz, 4/5 H), 8.21 (t, J = 5.8 Hz, 4/5 H); 13C
NMR (100 MHz, DMSO-d6, both rotamers) δ -5.1, -4.7, 11.6, 13.2,
14.0, 14.1, 17.7, 19.5, 21.5, 22.1, 23.3, 24.1, 25.1, 25.6, 25.8, 28.8, 30.5,
31.4, 33.4, 36.1, 37.2, 40.6, 41.4, 52.3, 53.2, 55.3, 58.2, 68.7, 69.9, 71.8,
72.1, 127.4, 127.5, 127.6, 128.2, 138.1, 169.2, 169.7, 170.3, 170.78,
170.83, 176.1.
1.40 (m, 11 H), 1.19-1.69 (m, 17 H), 1.74 (ddd, J = 14.0, 8.6, 5.6 Hz, 1
H), 1.99-2.06 (m, 1 H), 2.08-2.16 (m, 1 H), 2.78 (s, 3/5 H), 3.07-
3.15 (m, 1 H), 3.18 (s, 12/5 H), 3.62 (dd, J = 17.2, 3.9 Hz, 4/5 H), 3.69
(bs, 4/5 H), 3.79 (dd, J = 18.5, 3.7 Hz, 1/5 H), 3.84 (dd, J = 10.0, 4.8 Hz,
1 H), 3.90 (dd, J = 10.0, 5.7 Hz, 1 H), 3.95 (dd, J = 10.1, 4.2 Hz, 1/5 H),
4.00 (dd, J = 11.3, 4.8 Hz, 1/5 H), 4.11-4.21 (m, 9/5 H), 4.29 (q, J = 5.0
Hz, 4/5 H), 4.34-4.47 (m, 2 H), 4.54 (d, J = 11.8 Hz, 1 H), 4.57 (d, J =
11.8 Hz, 1 H), 4.77 (dd, J = 9.4, 3.9 Hz, 1/5 H), 4.84 (d, J = 11.1 Hz, 1/5
H), 5.08-5.14 (m, 4/5 H), 6.71 (d, J = 4.1 Hz, 1/5 H), 6.80 (bs, 1 H),
6.89 (d, J = 7.7 Hz, 4/5 H), 7.19 (d, J = 9.2 Hz, 1/5 H), 7.29-7.39 (m, 5
H), 7.59 (dd, J = 8.6, 3.6 Hz, 4/5 H), 7.84 (d, J = 6.5 Hz, 4/5 H); 13C
NMR (100 MHz, CDCl3, both rotamers) δ 11.69, 11.75, 11.8, 14.0,
14.7, 14.8, 15.1, 19.9, 20.0, 21.8, 22.5, 22.6, 23.06, 23.14, 24.2, 24.8, 25.2,
26.3, 26.9, 27.1, 28.8, 29.0, 29.2, 29.4, 29.7, 31.3, 31.6, 31.7, 36.8,
37.5, 38.1, 38.4, 39.5, 40.5, 40.8, 41.2, 55.4, 55.6, 56.3, 56.9, 57.2, 58.0,
59.3, 67.7, 67.8, 68.0, 73.5, 73.9, 77.7, 78.2, 127.9, 128.2, 128.5, 128.65,
128.72, 137.1, 169.1, 169.2, 170.9, 171.0, 171.6, 172.3, 172.8, 173.4,
174.2, 176.7.
Globomycin (1). Cyclodepsipeptide 51 (4.0 mg, 5.4 mmol) was
dissolved in MeOH (1.5 mL) and to the mixture was added Pd(OH)2
(2.5 mg, 20 wt %). Once the flask was purged of air, the reaction was
carried out under H2 atmosphere for 6 h. Then, once the flask was
purged of H2, the mixture was diluted with MeOH (3 mL), and the
catalyst removed by filtration. The methanolic solution was then
evaporated under reduced pressure, and the crude product purified by
preparative HPLC (column: Phenomenex-luna 5 μm C8(2), (10 mm ꢀ
250 mm), refraction index detector, flow rate: 4.7 mL/min with 90%
MeOH) to give globomycin (1) (3.0 mg, 86%): [R]25D = þ21.9 (c 0.13,
CH3OH) (lit.15 [R]25D = þ23.8 (c 0.5, CH3OH)); 1H NMR (400 MHz,
CDCl3, 3.5 mM, two rotamers in a 5.9/1 proportion) δ 0.83-1.00 (m,
15 H), 1.09 (d, J = 6.9 Hz, 18/7 H), 1.17 (d, J = 6.9 Hz, 3/7 H), 1.19-
1.44 (m, 13 H), 1.49-1.82 (m, 4 H), 1.98-2.06 (m, 2/7 H), 2.06-2.14
(m, 6/7 H), 2.19-2.28 (m, 6/7 H), 2.79 (s, 3/7 H), 2.95-3.01 (m, 1
H), 3.22 (s, 18/7 H), 3.60 (dd, J = 7.7, 5.6 Hz, 6/7 H), 3.81 (dd, J = 17.3,
4.6 Hz, 1 H), 3.91(t, J = 7.2 Hz, 6/7 H), 4.00 (d, J = 4.4 Hz, 6/7 H),
4.05-4.07 (m, 3/7 H), 4.08-4.16 (m, 6/7 H), 4.28 (dd, J = 17.4, 7.5 Hz,
1 H), 4.36 (q, J = 4.9 Hz, 1 H), 4.41-4.46 (m, 9/7 H), 4.48-4.58 (m, 5/
7 H), 4.78 (dd, J = 9.9, 4.0 Hz, 1/7 H), 4.85 (d, J = 10.6 Hz, 1/7 H), 4.92
(dt, J = 9.2, 3.0 Hz, 6/7 H), 6.70 (bs, 1/7 H), 7.00 (bs, 6/7 H), 7.08 (bs,
1/7 H), 7.16 (d, J = 8.9 Hz, 1/7 H), 7.24 (bs, 3/7 H), 7.40-7.49 (m, 1
H), 7.55-7.61 (m, 1 H), 7.76-7.79 (m, 2 H); 13C NMR (100 MHz,
CDCl3, both rotamers) δ 11.7, 13.5, 14.1, 14.6, 15.0, 19.3, 20.2, 22.0,
22.6, 22.7, 23.1, 24.6, 25.1, 25.4, 27.1, 29.0, 29.7, 31.2, 31.7, 31.9, 35.9,
38.0, 40.1, 40.6, 41.0, 56.2, 56.9, 59.0, 61.6, 66.8, 169.1, 170.6, 171.1,
172.6, 174.1, 176.4.
Cyclodepsipeptide 49. To a suspension of the seco-acid 47 (50
mg, 0.057 mmol, 1.0 equiv) in dry THF (2 mL) were added dry TEA (25
μL, 0.171 mmol, 3.0 equiv) and 2,4,6-trichlorobenzoyl chloride (12 μL,
0.068 mmol, 1.2 equiv) at room temperature. After 24 h, the suspension
was diluted with dry toluene (27 mL) and added over 5 h via a syringe
pump into a refluxed solution of 4-DMAP (140 mg, 1.14 mmol, 20.0
equiv) in dry toluene (29 mL). The mixture was refluxed for an
additional 2 h. Once cooled, the solvents were evaporated under reduced
pressure, diluted with EtOAc and washed sequentially with 5% HCl,
saturated NaHCO3 and brine aqueous solutions. The organic layer was
dried with anhydrous MgSO4, filtered and the solvent was evaporated
under reduced pressure. The resulted brown syrupe was purified by
preparative HPLC (column: Phenomenex-luna C8(2), (10 mm ꢀ 250
mm), refraction index detector, flow rate: 4.7 mL/min with 90%
MeOH) to give cyclic depsipeptide 4916 (12 mg, 24%) as a white solid:
[R]25D = þ16.0 (c 0.45, CH3OH); 1H NMR (400 MHz, CDCl3, two
rotamers in a 7:3 proportion) δ 0.05 (s, 21/10 H), 0.06 (s, 9/10 H), 0.07
(s, 21/10 H), 0.08 (s, 9/10H), 0.84-0.99 (m, 15 H), 0.84 (s, 63/10 H),
0.85 (s, 27/10 H), 1.07-1.16 (m, 6 H), 1.20-1.40 (m, 11 H), 1.41-
1.57 (m, 3 H), 1.63-1.75 (m, 27/10 H), 1.88-1.94 (m, 1 H), 1.98-
2.03 (m, 3/10H), 2.09-2.14 (m, 3/10H), 2.16-2.24 (m, 7/10 H), 2.77
(s, 9/10 H), 3.01 (dq, J = 9.6, 7.0 Hz, 7/10 H), 3.11-3.16 (m, 3/10 H),
3.16 (s, 21/10 H), 3.54 (dd, J = 17.1, 3.6 Hz, 7/10 H), 3.71 (bs, 7/10 H),
3.77 (dd, J = 10.1, 6.3 Hz, 7/10 H), 3.85 (dd, J = 10.1, 4.8 Hz, 7/10 H),
3.89 (dd, J = 10.4, 5.5 Hz, 3/10 H), 3.93-4.01 (m, 1 H), 4.20-4.23 (m,
7/10 H), 4.30 (q, J = 4.6 Hz, 3/10 H), 4.38 (dd, J = 17.2, 8.8 Hz, 7/10
H), 4.42-4.49 (m, 18/10 H), 4.51 (d, J = 11.8 Hz, 7/10 H), 4.55 (dd, J =
7.9, 4.6 Hz, 3/10 H), 4.61 (d, J = 11.8 Hz, 7/10 H), 4.61-4.65 (m, 14/
10 H), 4.76 (dd, J = 9.4, 3.9 Hz, 3/10 H), 4.83 (d, J = 10.7 Hz, 3/10 H),
5.28 (ddd, J = 9.9, 7.5, 2.9 Hz, 7/10 H), 6.39 (d, J = 7.5 Hz, 7/10 H), 6.42
(d, J = 2.5 Hz, 7/10 H), 6.69-6.71 (m, 6/10 H), 6.88 (d, J = 9.6 Hz, 3/10
H), 7.04 (t, J = 5.6 Hz, 3/10 H), 7.28-7.40 (m, 5 H), 7.71 (dd, J = 8.6,
3.6 Hz, 7/10 H), 8.21 (bs, 7/10 H); 13C NMR (100 MHz, CDCl3, both
rotamers) δ -4.8, -4.7, -4.6, 11.9, 14.1, 14.2, 15.1, 15.2, 15.3, 18.1,
18.4, 19.0, 21.8, 22.6, 22.7, 23.2, 23.3, 24.1, 25.0, 25.3, 25.9, 26.5, 27.1,
27.2, 29.1, 29.2, 29.4, 29.5, 31.6, 31.8, 31.9, 37.5, 37.6, 38.2, 38.5, 39.6,
40.2, 40.6, 56.1, 56.2, 56.3, 56.7, 59.1, 59.3, 59.4, 66.8, 67.1, 68.03, 68.12,
73.6, 73.9, 76.4, 77.4, 78.4, 128.2, 128.3, 128.5, 128.6, 128.9, 136.8, 137.0,
168.9, 169.4, 169.5, 169.7, 169.9, 170.1, 171.8.
Seco-Acid 48. Compound 48 was obtained following the same
procedure described for the synthesis of compound 47, using the
polymer-bound Fmoc protected pentapeptide 15 (118 mg, L = 0.6
mmol/g, 0.071 mmol, 1.0 equiv), hydroxyacid 10 (44 mg, 0.213 mmol,
3.0 equiv), TEA (30 μL, 0.213 mmol, 3.0 equiv) and DEPC (35 μL,
0.213 mmol, 3.0 equiv) for two times, 18 h each time. After cleavage,
1
Cyclodepsipeptide 51. To a solution of cyclic compound 49 (8
mg, 9.3 μmol, 1.0 equiv) in dry THF (0.5 mL) were added at room
temperature AcOH (40 μL, 0.698 mmol, 75.0 equiv) and TBAF
(0.5 mL, 1 M solution in THF, 0.5 mmol, 54.0 equiv). After 26 h, the
mixture was diluted with EtOAc and washed with a saturated aqueous
NaHCO3 solution and brine. Once dried over anhydrous MgSO4 and
the solvents evaporated under reduced pressure, the crude was purified
by preparative HPLC (column: Phenomenex-luna 5 μm C8(2), (10 mm
ꢀ 250 mm), refraction index detector, flow rate: 4.7 mL/min with 90%
MeOH) to give cyclodepsipeptide 5116 (6 mg, 87%) as a white solid:
[R]25D = þ26.0 (c 0.25, CH3OH); 1H NMR (400 MHz, CDCl3, two
rotamers in a 3.5/1 proportion) δ 0.85-0.98 (m, 15 H), 1.10 (d, J = 6.9
Hz, 12/5 H), 1.16 (d, J = 7.0 Hz, 3/5 H), 1.07-1.16 (m, 6 H), 1.20-
compound 4816 was obtained (49 mg, 77%): H NMR (400 MHz,
DMSO-d6, two rotamers in a 3.4:1 proportion) δ -0.03 (s, 3 H), 0.02 (s,
3 H), 0.70 (d, J = 6.9 Hz, 12/5 H), 0.74 (d, J = 6.9 Hz, 3/5 H), 0.79-0.91
(m, 12 H), 0.81 (s, 9 H), 0.96 (d, J = 6.8 Hz, 3 H), 1.06 (d, J = 6.2 Hz, 3
H), 1.19-1.31 (m, 14 H), 1.32-1.54 (m, 4 H), 1.58-1.67 (m, 1 H),
1.74-1.82 (m, 1 H), 2.69 (s, 3/5 H), 2.78-2.84 (m, 1 H), 2.87 (s, 12/5
H), 3.48-3.55 (m, 8/5 H), 3.57-3.61 (m, 12/5 H), 3.78 (dd, J = 17.5,
6.2 Hz, 1 H), 4.02 (q, J = 6.6 Hz, 1 H), 4.36-4.41 (m, 2 H), 4.49 (s, 2 H),
4.64-4.72 (m, 2 H), 5.11 (dd, J = 10.6, 5.2 Hz, 1 H), 7.24-7.34 (m, 6
H), 7.90 (d, J = 9.5 Hz, 1/5 H), 7.94 (d, J = 8.8 Hz, 1/5 H), 7.98 (d, J =
9.1 Hz, 3/5 H,), 8.06 (d, J = 8.0 Hz, 1/5 H), 8.18-8.21 (m, 9/5 H); 13C
NMR (100 MHz, DMSO-d6, both rotamers) δ -5.2, -4.8, 11.4, 13.1,
13.9, 14.1, 17.6, 19.5, 21.5, 22.1, 23.2, 24.1, 25.6, 28.6, 28.9, 29.1, 30.4,
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dx.doi.org/10.1021/jo1025145 |J. Org. Chem. 2011, 76, 2132–2144