Molecular Biology Reports
(7, CMNGC), cyano(6-methoxy-naphthalen-2-yl)methyl
trans-[(3-phenyloxiran-2-yl)methyl] carbonate (8, MNPC),
cyano(6-methoxy-naphthalen-2-yl)methyl 2-(3-ethyloxiran-
2-yl)acetate (9, MNEEpp), cyano(6-methoxy-naphthalen-
2-yl)methyl (2-(oxiran-2-yl)ethyl) carbonate (10, MNCEpB),
cyano-(6-methoxy-naphthalen-2-yl)-methyl-trans-((3-
ethyl-oxiran-2-yl)methyl) carbonate (11, MNPEC), cyano-
(6-methoxy-naphthalen-2-yl)-methyl 3,3-dimethyl-oxiranyl-
methyl carbonate (12, MniPC), as substrates.
column (2.1 × 150 mm, 1.8 µM particle size). Water with
0.1% glacial acetic acid was used as mobile phase (A)
Acetonitrile:methanol (84:16) with 0.1% glacial acetic acid
was used as mobile phase (B) The detection was carried
out by monitoring the selected-reaction transitions using a
4000 QTrap tandem mass spectrometer (Applied Biosystems
Instrument Corporation, CA) equipped with an electrospray
source (Turbo V). The quantification was performed using
external calibration followed by normalization of diols and
epoxides to recoveries of corresponding internal standards
CUDA. Results are expressed as means standard devia-
tions from three separate assays.
The determination of the specific activity of TrEH with
fluorescent substrates was performed according to Moris-
seau et al. [38]. The assays were performed in black 96-well
plates, to which 170 µL of TrEH enzyme solution (1.17 µg/
mL in sodium phosphate buffer with BSA) was added. Sub-
sequently, 30 µL of work solution of substrate [prepared
with the 270 µL mixture of substrate stock solution (5 mM
diluted in DMSO) and 3.730 µL of sodium phosphate buffer
with BSA was added to each well ([Enzyme]final = 1 µg/mL;
[Substrate]final = 50 µM)]. Fluorescence, emitted by the
TrEH reaction with the substrates 6–12, was measured using
Gemini EM fluorescent plate reader (Molecular Devices,
USA), with the excitation wavelength of 330 nm and emis-
sion wavelength of 465 nm for 10 min at 30 °C. Assays were
run under conditions where product formation was linearly
dependent both on the concentration of enzyme and on the
time for the course of the assay.
Screening of EH inhibitors by fluorescent assay
High‑throughput screening assay
The screening to find inhibitors for TrEH was performed
as described by Morisseau et al. [38], with some modifica-
tions: The 96-well fluorescence plates were prepared prior
to the assay, with the addition of 20 µL DMSO solution (1%
DMSO/sodium phosphate buffer with BSA) on the column
1 of the plate. In each well of the remainder of the plate (col-
umns 2–12), a solution was added with one of the inhibitors
of the library (10 µM inhibitor/1% DMSO/sodium phosphate
buffer with BSA). 30 plates were prepared, following the
above description to test all inhibitors. The plates, already
prepared, were stored in a refrigerator.
LC‑MS/MS analysis of TrEH activity on epoxy fatty
acids
In these pre-prepared plates, 150 µL of sodium phos-
phate buffer with BSA in the A1–D1 wells (these four wells
were used as background control) and 150 µL enzyme solu-
tion (150 ng/mL) diluted in sodium phosphate buffer with
BSA were added to the rest of the wells of the plate (wells
E1–H1 were used as full activity control). Subsequently,
30 µL of the solution of compound 6 (PHOME, 150 µM)
in sodium phosphate buffer with BSA / DMSO (97: 3)
([Substrate]final = 22.5 µM; [Enzyme]final = 112.5 ng/mL;
[inhibitor]final = 1 µM). The plate was incubated at room
temperature for 20 min in the dark. The amount of 6-meth-
oxy-2-naphthaldehyde formed was measured by fluorescence
detection using SpectraMax GEMINI EM fluorescent plate
reader (Molecular Devices, USA) with excitation wave-
length of 330 nm and wavelength of emission of 465 nm.
With these last assays, we choose 90 compounds with
the highest inhibitiory activity (> 90%) and prepared plates
with 20 µL of five concentrations of these inhibitors (10 µM,
1 µM, 100 nM, 10 nM and 1 nM). The assays were per-
formed as described above and we find the six best inhibitors
(compounds 13–18).
The determination of TrEH activity on EpFAs was per-
formed by LC–MS/MS analysis. The enzymatic reactions
were performed as described by Morisseau et al. [40]. In
glass tubes, 99 µL of TrEH enzyme solution at 2 µg/mL
(diluted in sodium phosphate buffer with BSA) and 1 µL
of the mix of epoxy fatty acids (14 regioisomers of arachi-
donic acid, (ARA), linolenic acid (LA), eicosapentaenoic
acid (EPA), docosahexaenoic acid (DHA), diluted in etha-
nol, all with a final concentration of 1 µM). The sample was
incubated at 30 °C in a water bath with stirring, and the
reaction was quenched by the addition of 400 µL of metha-
nol. Concentration of enzymes and incubation time were
optimized to yield < 5% conversion of the substrates in the
mixture. Then, 1 µL of 12-(3-cyclohexylureido) dodecanoic
acid (CUDA, 100 µM in methanol) was added to the solution
as an internal standard (200 nM of CUDA in a total volume
of 500 µL solution). The tubes were vortexed for 5 s and
centrifuged at 3000 rpm for 5 min. The supernatant was
collected for LC–MS/MS analysis.
The reactions were analyzed using Agilent 1200 SL
liquid chromatography series (Agilent Corporation,
USA) with an Agilent Eclipse Plus C-18 reversed-phase
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