4886
L. Zhang et al. / Bioorg. Med. Chem. 19 (2011) 4882–4886
Conditions were considered toxic if the ability of cells to metabolize
MTT to formazan was more than 20% lower than that of the control.
by Dunnett‘s test. Values of P <0.05 were considered statistically
significant.
3.5. Cyclooxygenase-1/2 (COX-1/2) assay
3.10. Molecular modeling and docking
The effects of the compounds on COX-1/2 were determined
with COX inhibitor screening assay kit (Cayman Chemical
Company, Ann Arbor, MI, USA) according to the instruction of the
The crystal structure of COX-2 complexed with the inhibitor
SC-558 (PDB ID:6COX) was downloaded from the RCSB protein
data bank and the PDB ID of COX-1 complexed with the inhibi-
tor celecoxib is 3KK6. The potential of the 3D structures of COX-
2 was assigned with Kollman-united charges encoded in the
molecular modeling software Sybyl 7.3 (Linux-os2x).The initial
structures of 1 and 2 were recovered from PubChem Compound
tures of 3 and H-harpagoside were built by Chemdraw Ultra
7.0. Partial atomic charges were computed using Sybyl 7.3,
applying Gasteiger-Marsili. For the purpose of tackling the inter-
action mode of the inhibitors with enzyme, the advanced dock-
ing program Autodock 3.0.3 was used to perform the automated
molecular docking. All compounds of the training set were man-
ually docked into the SC-558 (or celecoxib) binding pocket of the
COX-2 (COX-1) enzyme.50 docked structures of the inhibitor
were generated after a reasonable number of evaluations. Finally,
the docked complexes of inhibitor-enzyme were selected accord-
ing to criteria of interacting energy combined with geometrical
matching quality.
kit. Briefly, test compound solution or solvent 20
950 l, heme 10 l, and COX-1 (ovine) or COX-2 (human recombi-
nant) 10 l were incubated for 10 min, and AA 10 mM 10 l was
added to initiate the reaction and incubated for 2 min at 37 °C.
One molar of HCl, 50 l was added to terminate the reaction, and
the samples were then treated with 100 l saturated stannous
ll, reaction buffer
l
l
l
l
l
l
chloride solution for 5 min at room temperature. The activity of
COX-1/2 was determined by quantification of prostanglandins
formed with EIA.
3.6. RNA extraction and reverse transcription real-time
quantitative polymerase chain reaction
The RAW 264.7 murine macrophages were seeded in six-well
plates (2 Â 105 cells per well) for RNA extraction. Cells grown to
confluence were treated with the test compound solution or vehi-
cle solution for 3 h, and then stimulated with LPS 1 lg/ml for 24 h.
Total RNA was extracted using TRIzol reagent (Invitrogen Corpora-
tion, Carlsbad, CA, USA) according to the manufacturer’s instruc-
tion. The cDNA reverse-transcribed from total RNA was subjected
to real-time PCR using fluorescent dye SYBR Green and Thermal
Cycler Dice Real time System TP800 (TaKaRa Bio Inc., Kyoto, Japan).
The reagents used above were from SYBR PrimeScript RT-PCR Kit
(TaKaRa Bio Inc., Kyoto, Japan). The COX-2 primers (Forward 5’
TGTGCGACATACTCAAGC 3’, Reverse 3’ CTGATGCACGTTGTGGAC
5’) were designed according to the corresponding reference
sequences in the NCBI data base. PCR thermocycler conditions
comprised an initial holding at 95 °C for 15 s and subsequently a
two-step PCR programme consisting of 95 °C for 15 s and 60 °C
for 1 min for 40 cycles. Each sample was determined in duplicate.
The relative changes of mRNA between the test and control sam-
ples were quantitated using the 2-DDCt method.17 The data were
normalized with b-actin and expressed as the fold change in gene
expression relative to the untreated cell group.
Acknowledgements
This research program was supported by the National Science
and Technology Major Project of China 2009ZX09103-398; the
Program for Professors of Special Appointment (Eastern Scholar)
in Shanghai Institutions of Higher Learning and the Program for
Shanghai Key Discipline Establishment of TCM Pharmaceutics
(J50302); the ‘‘Xinlin’’ scholars and outstanding team training plan
of SHUTCM and the National Natural Science Foundation of China
(No.81073027).
A. Supplementary data
Supplementary data associated with this article can be found, in
include MOL files and InChiKeys of the most important compounds
described in this article.
3.7. Assay of TNF-a formation
RAW264.7 cells (2 Â 105 cells/well) were pretreated with the
test compounds, dexamethasone or vehicle solution for 30 min,
and then co-incubated with LPS (100 ng/ml) for further 6 h. The
References and notes
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RAW264.7 cells (2 Â 105 cells/well) were pretreated with the
test compounds, aminoguanidine or vehicle solution for 20 min,
and then co-incubated with LPS (1
Hundred microlitre supernatant was incubated with Griess reagent
(50 l 1% sulfanilamide and 50 l 0.1% naphthylethylenediamine
lg/ml) for further 18 h.
l
l
in 2.5% phosphoric acid solution). The absorbance at 570 nm was
measured and referred to a standard curve of sodium nitrite solu-
tion to determine the nitrite concentration.
14. Park, K. S.; Kim, B. H.; Chang, I.-M. ECAM 2010, 7, 41.
15. Kurumbail, R. G.; Stevens, A. M.; Gierse, J. K.; McDonald, J. J.; Stegeman, R. A.;
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3.9. Statistics
Data were expressed as mean SEM. Statistical analysis of the
data was performed by one way analysis of variances followed