Journal of Medicinal Chemistry
Article
Kieselgel 60 F254). Visualization was by examination under UV light
(254 and 366 nm). General staining was carried out with KMnO4 or
phosphomolybdic acid. A solution of ninhydrin (in ethanol) was used
to visualize primary and secondary amines. All organic extracts
collected after aqueous workup procedures were dried over anhydrous
MgSO4 or Na2SO4 before gravity filtration and evaporation to dryness.
Organic solvents were evaporated in vacuo at ≤40 °C (water bath
temperature). Purification using preparative layer chromatography
(PLC) was carried out using Fluka silica gel 60 PF254 containing
gypsum (200 mm × 200 mm × 1 mm). Flash chromatography was
performed using Merck Kieselgel 60 (0.040−0.063 mm).
stirred overnight in a solution of concd HCl (10 mL). The mixture was
concentrated under reduced pressure and the residue redissolved in
water (10 mL) before neutralization with aqueous 0.5 M NaOH. After
reconcentration, the residue was dissolved in the minimum amount of
MeOH and filtered (gravity), before purification by PLC (eluent 37%
aqueous NH3/MeOH/DCM 2:25:73). This gave 56 mg (73%) of a
brown semisolid: FT-IR 3339 (1° amine N−H, str), 3118 (br, O−H,
str), 1643 (urea CO, str), 1615 (1° amine N−H, bend), 1570 (aryl,
str), 836 (aryl C−H, bend, para-disubstituted ring); 1H NMR
(MeOD-d4) δ 7.17 (d, J = 8.7 Hz, 2H, aryl 3-H and 5-H), 6.73 (d,
J = 8.7 Hz, 2H, aryl 2-H and 6-H), 3.45 (t, J = 5.6 Hz, 2H,
CH2NH(CO)NH), 3.05 (t, J = 6.0 Hz, 2H, CH2NH2); 13C NMR
(MeOD-d4) δ 159.38 (4° aryl 4-C), 154.70 (CO), 132.02 (4° aryl 1-
C), 123.61, 116.32 (aryl CH), 41.73 (CH2NH2), 38.79 (CH2NH(C
O)NH); m/z HRMS (TOF ES+) C9H14N3O2 [MH]+ calcd 196.1081;
found 196.1081.
Melting points (mp) were recorded on a Reichert 7905 apparatus or
Perkin-Elmer Pyris 1 differential scanning calorimeter and were
uncorrected. Fourier transform infrared (FT-IR) spectra were
recorded as thin films or KBr disks in the range of 4000−500 cm−1
using an Avatar 360 Nicolet FT-IR spectrophotometer. Hig- resolution
mass spectra (HRMS)−time-of-flight electrospray (TOF ES ) were
recorded on a Waters 2795 separation module/micromass LCT
1-(Benzyloxy)-4-[2-(cyclopentyloxy)ethoxy]benzene (26a).
2-(Cyclopentyloxy)ethanol (21) (3.751 g, 28.81 mmol), triphenyl-
phosphine (9.448 g, 36.02 mmol, 1.25 equiv), and 4-(benzyloxy)-
phenol (14) (5.769 g, 28.81 mmol, 1 equiv) were dissolved in DCM
(70 mL). Di-tert-butyl azodicarboxylate (8.294 g, 36.02 mmol, 1.25
equiv) in DCM (20 mL) was added dropwise to the reaction mixture,
which was allowed to stir overnight. After removal of approximately
half of the solvent from the reaction mixture under reduced pressure,
the resulting slurry was diluted with hexanes (100 mL) and washed
with aqueous 1 M HCl (2 × 50 mL), aqueous 1 M NaOH (2 × 50
mL), water (2 × 50 mL), and brine (1 × 50 mL). The organic layer
was concentrated and redissolved in DCM (30 mL). On addition of
hexanes a precipitate of triphenylphosphine oxide began to form. The
flask was left in the freezer for 1 h before filtration of the precipitate
and washing with hexanes and Et2O. After concentration of the filtrate,
purification was achieved via FCC (eluent Et2O/hexanes 10:90) to
give 6.75 g (75%) of a clear colorless oil: FT-IR 2870, 2954 (alkyl C−
H, str), 1507 (aryl, str), 1109 (C−O−C, str), 824 (aryl C−H, bend,
1
platform. H NMR spectra were recorded on a Bruker-AV 400 at
400.13 MHz. 13C NMR spectra were recorded at 101.62 MHz.
Chemical shifts (δ) are recorded in parts per million (ppm) with
reference to the chemical shift of the deuterated solvent/an internal
tetramethylsilane (TMS) standard. Coupling constants (J) and
carbon−fluorine coupling constants (JCF) are recorded in hertz and
the significant multiplicities described by singlet (s), doublet (d),
triplet (t), quadruplet (q), broad (br), multiplet (m), doublet of
doublets (dd), and doublet of triplets (dt). Spectra were assigned using
appropriate COSY, distortionless enhanced polarization transfer
(DEPT), HSQC, and HMBC sequences. Unless otherwise stated, all
spectra were recorded in CDCl3.
Analytical reverse-phase high-performance liquid chromatography
(RP-HPLC) was performed on a Waters Millenium 995 LC using both
system 1 and system 2 described below and was used to confirm that
all final products were ≥95% pure.
System 1: Phenomenex Onyx Monolithic reverse phase C18 column
(100 × 4.6 mm), a flow rate of 3.00 mL/min and UV detection at 287
nm. Linear gradient 5−95% solvent B over 10 min. Solvent A, 0.1%
formic acid (FA) in water; solvent B, 0.1% FA in MeCN.
1
para-disubstituted ring), 738, 696 (aryl C−H bend, phenyl ring); H
NMR δ 7.34 − 7.48 (m, 5H, aromatic benzyl CH), 6.91, 6.96 (d, J =
9.2 Hz, 2 × 2H, aryl-dioxy ring), 5.04 (s, 2H, PhCH2O), 4.09 (t, J =
c
4.9 Hz, 2H, CH2OArOBn), 4.02−4.06 (m, 1H, Pe CH), 3.76 (t, J =
c
System 2: Waters symmetry reverse phase C18 column (75 × 4.6
mm), a flow rate of 1.00 mL/min, and UV detection at 287 nm. Linear
gradient 5−95% solvent B over 20 min. Solvent A, 0.1% FA in water;
solvent B, 0.1% FA in MeOH. Preparative HPLC was performed using
a Phenomenex Onyx Monolithic reverse phase C18 column (100 × 10
mm), a flow rate of 14.10 mL/min, and UV detection at 287 nm.
Samples were run in 5−95% solvent B over 10 min. Solvent A, 0.1%
FA in water; solvent B, 0.1% FA in MeCN. All retention times (Rt) are
quoted in minutes.
1-(2-Aminoethyl)-3-(4-benzyloxy)phenylurea (12). A solution
of 4-(benzyloxy) phenylisocyanate (3.739 g, 16.61 mmol) in
anhydrous DCM (30 mL) was dripped into a flask containing
vigorously stirred 1,2-ethanediamine (11) (6 mL, 89.80 mmol, 5.4
equiv) under nitrogen. Instant precipitation of a white solid was noted,
and the reaction was allowed to stir for a further 3 h after addition of
isocyanate solution was complete. After removal of all volatiles under
reduced pressure, the crude solid was washed with Et2O, before drying
to give 4.472 g (94%) of white solid: mp 147−149 °C; FT-IR 3300
(primary (1°) amine N−H, str), 2932, 2864 (alkyl C−H, str), 1642
(urea CO, str), 1604 (1° amine N−H, bend), 1111 (C−O, str), 830
(aryl C−H, bend, para-disubstituted ring), 741, 697 (aryl C−H, bend,
phenyl ring); 1H NMR (DMSO-d6) δ 8.48 (s, 1H, NHAr), 7.31−7.44
(m, 5H, aromatic benzyl CH), 7.28, 6.88 (d, J = 9.0 Hz, 2 × 2H, para-
disubstituted ring), 6.24 (t, J = 5.2 Hz, 1H, NHCONHAr), 5.02 (s,
2H, PhCH2O), 4.27 (br s, 2H, NH2), 3.10−3.17 (m, 2H, CH2NH),
2.67 (t, J = 6 Hz, CH2NH2); 13C NMR (DMSO-d6) δ 155.72 (CO),
152.88, 137.37, 133.97 (4 °C), 128.37, 127.71, 127.63 (benzyl CH),
119.29, 114.87 (aryl CH), 69.37 (benzyl CH2), 40.87 (CH2NH2),
40.38 (CHNH); m/z HRMS (TOF ES+) C16H20N3O2 [MH]+ calcd
286.1550; found 286.1547.
5.3 Hz, 2H, CH2CH2OArOBn), 1.73−1.84 (m, 6H, Pe CH2), 1.56−
c
1.63 (m, 2H, Pe CH2); 13C NMR δ 153.02, 153.26 (4 °C, aryl-dioxy
ring), 137.29 (4° benzyl C), 127.44, 127.83, 128.50 (benzyl CH),
115.62, 115.68 (CH aryl-dioxy ring), 81.89 (cPe CH), 70.55 (benzyl
CH2), 68.16 (CH2OArOBn), 67.28 (CH2CH2OArOBn), 32.27 (2-C
c
c
and 5-C Pe ring), 23.55 (3-C and 4-C Pe ring); m/z HRMS (TOF
ES+) C20H25O3 [MH]+ calcd 313.1798; found 313.1766.
4-(2-[Cyclopentyloxy]ethoxy)phenol (27a). 1-(2-
(Cyclopentyloxy)ethoxy)-4-(benzyloxy)benzene (26a) (6.326 g,
20.25 mmol) was hydrogenated according to the general procedure
for O-benzyl deprotection to give the title compound in quantitative
yield as a clear colorless oil: FT-IR 3381 (br, O−H, str), 2960, 2871
(alkyl C−H, str), 1510 (aryl, str), 1104 (C−O−C, str), 827 (aryl C−
1
H, bend, para-disubstituted ring); H NMR δ 7.60 (br s, 1H, OH),
6.69, 6.73 (d, J = 9.2 Hz, 2 × 2H, para-disubstituted phenol), 3.96−
c
3.99 (m, 3H, CH, CH2OAr), 3.70 (t, J = 5.0 Hz, 2H, PeOCH2),
1.62−1.78 (m, 6H, cPe CH2), 1.45−1.53 (m, 2H, cPe CH2); 13C NMR
δ 150.05, 152.01 (4 °C), 115.53, 115.88 (CH phenolic ring), 82.05
(cPe CH), 67.82 (CH2OAr), 67.11 (CH2CH2OAr), 32.87 (2-C and 5-
c
c
C Pe ring), 23.20 (3-C and 4-C Pe ring); m/z HRMS (TOF ES−)
C13H17O3 [M − H]− calcd 221.1183; found 221.1191.
2-{4-[2-(Cyclopentyloxy)ethoxy]phenoxymethyl}oxirane
(28a). NaH 60% suspension in mineral oil (863 mg, equivalent to 518
mg of NaH, 21.58 mmol, 1.1 equiv) was suspended in anhydrous
DMF (20 mL) with stirring under a nitrogen atmosphere. After 5 min,
4-(2-(cyclopentyloxy)ethoxy)phenol (27a) (4.360 g, 19.61 mmol) in
anhydrous DMF (20 mL) was added dropwise, with the vessel cooled
over an ice bath. This mixture was then allowed to stir at rt for 20 min
before addition of rac-epichlorohydrin (15.34 mL, 196.10 mmol, 10
equiv). The mixture was stirred for 7 h and then quenched cautiously
with MeOH. After removal of all volatiles under reduced pressure, the
crude residue was partitioned between water (30 mL) and Et2O (30
1-(2-Aminoethyl)-3-(4-hydroxy)phenylurea (13). 1-(2-Amino-
ethyl)-3-(4-(benzyloxy)phenyl) urea (12) (113 mg, 0.40 mmol) was
J
dx.doi.org/10.1021/jm400348g | J. Med. Chem. XXXX, XXX, XXX−XXX