A New Mode of Glycosyltransferase Inhibition
FULL PAPER
[M+Na]+ (100); HRMS: calcd for C31H45N4O9 [M+H]+: 617.3181,
found: 617.3189.
Na]+, 3921.3 [MÀC39H60N9O24 +Na]+, 3562.0 [MÀC54H80N12O32 +Na]+,
3215.9 [MÀC67H100N15O40 +Na]+, 2856.7 [MÀC81H120N18O48 +Na]+.
Compound
C60(E)12: As described for C60(D)12, with 17 (295 mg,
Compound C60(A)12: A mixture of 17 (166 mg, 0.071 mmol), 9 (230 mg,
0.926 mmol), CuSO4·5H2O (1 mg, 0.007 mmol) and sodium ascorbate
(4 mg, 0.021 mmol) in CH2Cl2/H2O/DMSO (1:1:1, 3 mL) was heated 2 h
under microwave irradiation (1008C). The product was precipitated by
addition of acetone (20 mL). The precipitate was washed with MeOH,
then CH2Cl2 and dried under reduced pressure. Compound C60(A)12 was
further purified by filtration on a SephadexTM column (H2O), precipitated
with MeOH and dried under high vacuum in order to totally remove
eventual traces of residual copper-based impurities from the CuAAC re-
actions. Compound C60(A)12 (169 mg, 45%) was thus obtained as a red
0.127 mmol) and 2 (360 mg, 1.65 mmol). Compound C60(E)12 (509 mg,
81%) was thus obtained as a red–orange powder. 1H NMR ([D6]DMSO,
300 MHz):d=7.81 (s, 12H), 4.70 (m, 24H), 4.55 (m, 12H), 4.43 (m,
12H), 4.33 (m, 60H), 3.62 (m, 24H), 3.40 (m, 24H partially masked by
the H2O signal), 2.59 (m, 24H), 2.19 (m, 24H), 1.55 ppm (m, 48H).
13C NMR ([D6]DMSO, 75 MHz): d=162.6, 146.9, 145.0, 140.6, 121.7,
99.7, 73.8, 71.0, 70.3, 68.6, 67.0, 65.9, 64.3, 61.2, 48.5, 45.9, 45.2, 28.5, 25.7,
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À
24.7 ppm. IR (neat): n˜ =3332 (O H), 1740 cm (C=O). UV/Vis (H2O):
247 (79700), 269 (64300), 283 (58700), 320 (sh, 37200), 337 nm (sh,
29200 molÀ1 dm3 cmÀ1). MALDI-TOF MS: 5476.8 [M+Na]+, 5088.0
1
solid. H NMR (300 MHz, [D6]DMSO): d=8.02 (s, 12H), 4.61 (m, 24H),
[MÀC16H26N3O8 +Na]+,
4688.3
[MÀC33H52N6O16 +Na]+,
4299.9
4.49 (24H), 4.07 (m, 12H), 4.61 (m, 48H), 4.49 (m, 48H), 4.07 (m, 12H),
3.35 (m, 36H), 3.13 (m, 24H), 2.04 ppm (m, 24H). 13C NMR (100 MHz,
[D6]DMSO): d=162.7, 145.2, 143.6, 140.6, 124.2, 98.9, 71.2, 70.1, 68.6,
[MÀC49H78N9O24 +Na]+, 3898.5 [MÀC66H104N12O32 +Na]+, 3511.2
[MÀC82H130N15O40 +Na]+), 3110.0 [MÀC99H156N18O48 +Na]+, 3721.8
[MÀC115H182N21O56 +Na]+.
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65.9, 64.3, 62.5, 58.8, 46.1, 28.6 ppm. IR (neat): n˜ =3340 (O H),
1739 cmÀ1 (C=O). UV/Vis (H2O): 232 (66000), 326 (sh, 24000), 379 nm
(sh, 9500 molÀ1 dm3 cmÀ1). MALDI-TOF MS: 5331.6 [M+Na]+, 4956.3
Compound
C60(F)12: A 1m solution of TBAF in THF (0.37 mL,
0.37 mmol) was added to a mixture of 15 (80 mg, 0.027 mmol), 3 (156 mg,
0.35 mmol), CuSO4·5H2O (0.4 mg, 0.003 mmol) and sodium ascorbate
(1.6 mg, 0.008 mmol) in CH2Cl2/MeOH/DMSO (1:1:1, 3 mL). The result-
ing mixture was stirred at room temperature. After 24 h, methanol
(10 mL) was added to the mixture and the resulting orange precipitate
filtered, extensively washed with methanol then CH2Cl2 and dried under
high vacuum. Compound C60(F)12 was further purified by filtration on a
SephadexTM column (H2O), precipitated with MeOH and dried under
high vacuum to totally remove eventual traces of residual copper-based
impurities from the CuAAC reactions. Compound C60(F)12 (168 mg,
[MÀC14H22N3O9 +Na]+,
4566.2
[MÀC29H44N6O18 +Na]+,
4190.9
([MÀC43H66N9O24 +Na]+), 3801.7 [MÀC58H88N12O36 +Na]+, 3426.5
[MÀC72H110N15O45 +Na]+, 3036.3 [MÀC87H132N18O54 +Na]+, 2662.1
[MÀC101H154N21O63 +Na]+.
Compound C60(B)12
: As described for C60(A)12, with 17 (100 mg,
0.043 mmol) and 10 (162 mg, 0.56 mmol). Compound C60(B)12 (122 mg,
49%) was thus obtained as a red–orange solid. 1H NMR (300 MHz,
[D6]DMSO): d=7.81 (s, 12H), 4.61 (m, 12H), 4.30 (m, 72H), 3.76 (m,
24H), 3.62 (m, 48H), 3.35 (m, 96H), 2.18 (m, 24H), 1.55 ppm (m, 48H).
13C NMR (100 MHz, [D6]DMSO): d=162.7, 146.9, 145.0, 140.6, 121.7,
99.7, 71.3, 71.2, 70.7, 70.4, 68.7, 65.9, 65.8, 64.3, 62.6, 48.5, 46.4, 45.9, 28.5,
25.7, 24.8 ppm. IR (neat): n˜ =3362 (O-H), 1740 cmÀ1 (C=O). UV/Vis
1
84%) was thus obtained as a red solid. H NMR ([D6]DMSO, 300 MHz):
d=8.33 (br s, 12H), 7.82 (br s, 12H), 7.26–7.46 (m, 48H), 4.40–4.80 (m,
84H), 4.20–4.38 (m, 36H), 4.04–4.16 (m, 24H), 3.60–3.75 (m, 24H), 3.47–
3.57 (m, 24H), 3.33–3.45 (m, 36H), 2.55–2.75 (m, 24H), 2.10–2.20 (m,
24H), 1.88–2.00 (m, 24H), 1.70–1.85 (m, 24H), 1.40–1.55 ppm (m, 24H).
13C NMR ([D6]DMSO, 100 MHz): d=171.5, 162.7, 145.6, 145.0, 140.7,
138.3, 131.2, 127.7, 121.7, 121.3, 99.1, 87.0, 81.4, 74.2, 71.0, 70.2, 68.8, 67.1,
(H2O):
232
(64000),
326
(sh,
22000),
379 nm
(sh,
8500 molÀ1 dm3 cmÀ1).MALDI-TOF MS: 5851.5 [M+K]+, 5434.0
[MÀC17H28N3O9 +K]+,
[MÀC35H56N6O18 +K]+,
[M-C70H112N12O36 +K]+,
[M-C105H168N18O54 +K]+.
5419.9
4987.8
3736.9
[MÀC17H28N3O9 +Na]+,
[MÀC35H56N6O18 +Na]+,
[M-C87H139N15O45 +K]+,
5002.7
4154.1
3305.6
67.0, 66.5, 61.2, 48.9, 45.6, 40.3, 34.3, 29.2, 28.5, 27.6, 22.0, 21.3 ppm. IR
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(neat): n˜ =3385 (O H), 2129 (C C), 1740 (C=O), 1648 (C=O) cm
.
Enzymatic assays: For determination of specific activity, WaaC activity
was monitored by a coupled assay involving pyruvate kinase (PK) and lu-
ciferase as coupling enzymes.[22,23] Basically, the reaction product ADP
was converted by PK to ATP, which was detected by luciferase activity.
The reaction took place in a white 96-well plate (Costar) in a final
volume of 60 mL. The assay buffer contained Hepes (50 mm, pH 7.5),
MgCl2 (10 mm), KCl (50 mm), dithiothreitol (1 mm), myelin basic protein
(0.1 mm; Sigma) and Triton X-100 (0.1% (v/v)), which generated support-
ing micelles for Re-LPS. The pre-incubation mixture contained 3 mL of
inhibitors (at eight different concentrations) in DMSO and of WaaC
(27 mL; 0.1 nm final concentration). After 30 min of preincubation at
room temperature, ADP-heptose (1 mm) and Re-LPS (1 mm; Sigma, puri-
fied from Salmonella minnesota) were added and the resulting reaction
mixture (60mL) was incubated at room temperature until a 30% conver-
sion rate was reached. The following readout mixture (100 mL) was final-
ly added in each well: pyruvate kinase (5 unitsmLÀ1, Sigma), phospho-
Compound
0.038 mmol) and 14 (147 mg, 0.502 mmol). Compound C60(C)12 (156 mg,
69%) was thus obtained as
dark red solid. 1H NMR (300 MHz,
[D6]DMSO): d=8.01 (s, 12H), 4.66 (m, 12H), 4.45 (m, 12H), 4.37 (m,
36H), 4.29 (m, 12H), 3.95 (m, 12H), 3.80 (m, 72H, partially masked by
the H2O signal), 2.22 ppm (m, 24H). 13C NMR (100 MHz, [D6]DMSO):
d=175.1, 163.2, 145.6, 144.8, 141.1, 124.7, 99.5, 75.7, 72.2, 71.5, 71.0, 70.4,
C60(C)12: As described for C60(A)12, with 17 (90 mg,
a
À
69.9, 64.4, 59.4, 46.6, 45.7, 29.2 ppm. IR (neat): n˜ =3355 (O H),
1736 cmÀ1 (C=O). UV/Vis (H2O): 232 (65000), 326 (sh, 24000), 379 nm
(sh, 8900 molÀ1 dm3 cmÀ1). MALDI-TOF MS: 5860.0 [M+Na]+, 5439.8
[MÀC15H22N3O11 +Na]+,
[MÀC46H66N9O33 +Na]+,
[MÀC77H110N15O55 +Na]+.
5007.6
4154.5
[MÀC31H44N6O22 +Na]+,
4586.7
3734.4
[MÀC62H88N12O44 +Na]+,
Compound C60(D)12: A mixture of 17 (176 mg, 0.072 mmol), 1 (203 mg,
0.93 mmol), CuSO4·5H2O (1 mg, 0.007 mmol) and sodium ascorbate
(4 mg, 0.021 mmol) in CH2Cl2/H2O/DMSO (1:1:1, 3 mL) was stirred at
RT for 96 h. Methanol (15 mL) was added to the mixture and the result-
ing orange precipitate filtered, extensively washed with methanol then
CH2Cl2 and dried under high vacuum. Compound C60(D)12 was further
purified by filtration on a SephadexTM column (H2O), precipitated with
MeOH and dried under high vacuum to totally remove eventual traces of
residual copper-based impurities from the CuAAC reactions. Compound
C60(D)12 (261 mg, 73%) was thus obtained as a red–orange powder.
1H NMR ([D6]DMSO, 300 MHz): d=8.06 (s, 12H), 4.81 (m, 12H), 4.71
(m, 12H), 4.16 (m, 24H), 4.38 (m, 48H), 3.20 (m, 48H partially masked
by the H2O signal), 2.07 ppm (m, 24H). 13C NMR ([D6]DMSO, 75 MHz):
ACHUTNGRENUeNG nolAHCUTNGTRENpNNGU yruvate (50 mm; Sigma), luciferase (Sigma), 20 mm luciferin
(10000 unitsmLÀ1, Sigma), N-acetylcysteamine (0.1 mm, Aldrich). The lu-
minescence intensity was read on a Luminoskan (Thermo). IC50 curves
were fit to a classical Langmuir equilibrium model using XLFIT (IDBS).
Acknowledgements
d=163.0, 145.3, 143.9, 140.8, 124.4, 99.3, 74.1, 71.0, 70.3, 68.9, 67.1, 64.6,
The authors thank the EU (“Marie Curie Training Network” grant, “Dy-
namic Interactive Chemical Biology & Biomedicine”, MRTN-CT-2005–
019561), the FNRS (FRFC grant 2.4.625.08.F and “Crꢁdit au Chercheur ”
1.5.167.10), the CNRS (UMR 7509) and the University of Strasbourg for
financial support. We also thank V. Oerthel for the initial preparation of
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61.4, 59.3, 46.5, 46.0, 28.8 ppm. IR (neat): n˜ =3332 (O H), 1740 cm
(C=O). UV/Vis (H2O): 245 (77700), 268 (62200), 282 (57500), 321 (sh,
35800), 341 nm (sh, 26400 molÀ1 dm3 cmÀ1). MALDI-TOF MS: 4971.4
[M+Na]+, 4625.9 [MÀC13H20N3O8 +Na]+, 4266.5 [MÀC27H40N6O16
+
Chem. Eur. J. 2012, 18, 641 – 651
ꢃ 2012 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim
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