Journal of Medicinal Chemistry
Brief Article
General Procedure for the Preparation of Derivatives 14 and
16. Example: 5-Chloro-N-(2-cyanophenyl)-3-((3,5-dimethyl-
phenyl)sulfonyl)-1H-indole-2-carboxamide (14). A mixture of
18 (150 mg, 0.41 mmol) and thionyl chloride (5 mL) was heated at
reflux temperature for 1.5 h. After evaporation to dryness, the residue
was dissolved in anhydrous THF (5 mL). Triethylamine (0.41 mg,
0.06 mL, 0.41 mmol) and 2-aminobenzonitrile (72 mg, 0.61 mmol)
were added, and the mixture was stirred at 25 °C for 1 h. Water and ethyl
acetate were added while shaking. The organic layer was washed with
brine and dried. Removal of the solvent gave a residue that was purified
by column chromatography (silica gel, ethyl acetate as eluent) to furnish
14 (186 mg, 98%), mp 282−285 °C (from ethanol). 1H NMR (DMSO-d6):
δ 2.29 (s, 6H), 7.25 (s, 1H), 7.38 (d, J = 8.3 Hz, 1H), 7.47 (t, J = 8.1 Hz,
1H), 7.59 (d, J = 8.6 Hz, 1H), 7.67 (s, 2H), 7.74−7.79 (m, 2H), 7.91−
7.94 (m, 2H), 11.30 (br s, 1H, disappeared on treatment with D2O),
13.31 ppm (br s, 1H, disappeared on treatment with D2O). IR: ν 1656,
2224, 3230 cm−1. Anal. (C24H18ClN3O3S (463.94)) C, H, Cl, N, S.
5-Chloro-N-(3-cyanophenyl)-3-((3,5-dimethylphenyl)sulfo-
nyl)-1H-indole-2-carboxamide (15). 1,1′-Carbonyldiimidazole (120 mg,
0.75 mmol) was added to a suspension of 18 (250 mg, 0.69 mmol)
in anhydrous THF (15 mL). The reaction mixture was stirred at 25 °C
for 3 h, and then 3-aminobenzonitrile (150 mg, 1.25 mmol) was added.
The reaction mixture was stirred at 25 °C for 2 h and diluted with water
and extracted with ethyl acetate. The organic layer was washed with
brine and dried. Removal of the solvent gave a residue that was purified
by column chromatography (silica gel, ethyl acetate:n-hexane = 1:1 as
eluent) to furnish 15 (110 mg, 45%), mp 270 °C (from ethanol).
1H NMR (DMSO-d6): δ 2.34 (s, 6H), 7.27 (s, 1H), 7.36 (dd, J = 2.3 and
8.3 Hz, 1H), 7.58 (t, J = 8.2 Hz, 1H), 7.66−7.67 (m,4H), 7.94 (d, J =
2.1 Hz, 1H), 7.95−7.82 (m, 1H), 8.20 (s, 1H), 11.23 (br s, 1H,
disappeared on treatment with D2O), 13.31 ppm (br s, 1H, disappeared
on treatment with D2O). IR: ν 1678, 2232, 3235 cm−1. Anal.
(C24H18ClN3O3S (463.94)) C, H, Cl, N, S.
Table 5. HIV-1 RT Inhibitory Activity of Compounds 8, 9, 12,
15, and 17 against the WT and Mutant RTs Carrying Single
Amino Acid Substitutions
a
b
IC50 (nM)
compd
WT
K103N
L1001
8
20
21
32
45
8
11
9
12
15
17
40
162
>40
>10
190
7000
400
20
24
506
>10
23
287
>4
c
3
112
9000
NVP
EFV
ETV
400
80
d
nd
10
10
a
Data represent mean values of at least three separate experiments.
Compound concentration (IC50, nM) required to inhibit by 50% the
b
RT activity of the indicated strain. Literature7 nd: no data.
c
d
The binding modes of IASs into WT and mutated RTs are
discussed in Supporting Information
CONCLUSIONS
■
We synthesized new IAS derivatives 7−17 bearing nitrogen
containing substituents at the indole-2-carboxamide linked
through a methylene/ethylene spacer. The IASs 7−17 proved
to be potent inhibitors of the HIV-1 WT (NL4−3 strain) in MT-
4 cells in the low nanomolar concentrations and weakly
cytotoxic. Several compounds were potent inhibitors of the
mutant HIV-1 strains. Compound 9 was uniformly effective
against the mutant Y181C, Y188L, and K103N HIV-1 strains,
superior to EFV and equipotent to AZT. IAS 9 was highly active
against the multiresistant mutant IRLL98 HIV-1 strain bearing
the K101Q, Y181C, and G190A mutations conferring resistance
to NVP, DLV, and EFV. Compound 9 also potently inhibited in
the higher picomolar range various HIV-1 clades, independently
of their coreceptor use, in PBMC. ATI 9 emerged as a useful lead
compound for the development of new therapeutic tools for
EFV-based HIV-1 therapies which show the emergence of the
L100I and K103N mutations. We succeeded in the development
of new three-cycles containing ATIs as hybrides between two-
wings and horseshoe-conformation NNRTIs.9 Such results
provide useful information for further development of this
class of HIV-1 NNRTIs.
ASSOCIATED CONTENT
■
S
* Supporting Information
Additional chemical and biological information. This material is
AUTHOR INFORMATION
■
Corresponding Author
*Phone: +39 06 4991 3800. Fax: +39 06 4969 3268. E-mail:
Notes
The authors declare no competing financial interest.
ACKNOWLEDGMENTS
■
We are indebted to Istituto PasteurFondazione Cenci
Bolognetti (grant 2009), Finanziaria Laziale di Sviluppo
(FILAS, grant 2010), and the Spanish MICINN (projects
BFU2009-06958 and SAF201021617-C02) for financial support.
This work was supported by the K.U. Leuven (GOA no. 10/014
and PF/10/018) and the FWO (no. G.485.08), and we are
grateful to S. Claes and E. Fonteyn for excellent technical
assistance. A.C. thanks Istituto PasteurFondazione Cenci
Bolognetti for his Borsa di Studio per Ricerche in Italia.
EXPERIMENTAL SECTION
■
Chemistry. Combustion analysis was used as a method for
establishing compound purity. Purity of the tested compounds was
≥95%. See Supporting Information for details.
General Procedure for the Preparation of Derivatives 7−13
and 17. Example: 5-Chloro-3-((3,5-dimethylphenyl)sulfonyl)-N-
(pyridin-2-ylmethyl)-1H-indole-2-carboxamide (7). A mixture of
18 (300 mg, 0.82 mmol), 2-picolylamine (130 mg, 0.13 mL, 1.24 mmol),
BOP reagent (360 mg, 0.82 mmol), and triethylamine (250 mg,
0.35 mL, 2.48 mmol) in anhydrous DMF (10 mL) was stirred at 25 °C for
12 h. The reaction mixture was diluted with water and extracted with ethyl
acetate. The organic layer was washed with brine and dried. Removal of the
solvent gave a residue that was purified by column chromatography (silica
gel, ethyl acetate as eluent) to furnish 7 (190 mg, 60%) as a white solid,
mp 229−231 °C (from ethanol). 1H NMR (DMSO-d6): δ 1.99 (s, 6H),
4.69 (d, J = 5.9 Hz, 2H), 7.26 (s, 1H), 7.30−7.36 (m, 2H), 7.54−7.58
(m, 2H), 7.66 (s, 2H), 7.82 (t, J = 7.7 Hz, 1H), 7.97 (s, 1H), 8.57 (d, J =
3.9 Hz, 1H), 9.59 (br t, J = 4.9 Hz, 1H, disappeared on treatment with
D2O), 13.1 ppm (br s, 1H, disappeared on treatment with D2O). IR: ν
1636, 3220, 3297 cm−1. Anal. (C23H20ClN3O3S (453.94)) C, H, Cl, N, S.
ABBREVIATIONS USED
■
IAS, indolylarylsulfone; HIV-1, human immunodeficiency virus
type 1; AIDS, acquired immune deficiency syndrome; RT,
reverse transcriptase; NNRTI, non-nucleoside reverse tran-
scriptase inhibitor; HAART, highly active antiretroviral therapy;
WT, wild type; NVP, nevirapine; EFV, efavirenz; ETV,
etravirine; RPV, rilpivirine; PBMC, peripheral blood mono-
nuclear cells
D
dx.doi.org/10.1021/jm300477h | J. Med. Chem. XXXX, XXX, XXX−XXX