REACTION WITH A CYCLIC MACROMOLECULE
mixture was stirred for 30 min and mixed with 50 mL of diethyl ether. The
crude solid was dissolved in 10 mL of acetonitrile, and diethyl ether was
diffused into the solution. Cream-colored crystals of [1-(N-nicotinamide)]
(ClO4) (8) were obtained in 30% yield (melting point = 172–175 ꢀC).
molecule per asymmetric unit, which was used as the antisolvent during
crystallization. The anion is also rotationally disordered over two positions
in a ~60:40 ratio. The smaller occupancy was left isotropic. Because of the
anion disorder, neither of the hydrogen atoms around the sulfate anion
could be reliably located. SADI was used to restrain all sulfur–oxygen
distances within the anions as well.
Primary amide (benzamide) versus alkyl nitrile (acetonitrile) nucleophiles
1 (0.5 mmol) and benzamide (0.55 mmol) were dissolved in 5 mL of ace-
tonitrile and mixed with five drops of 70% perchloric acid. The mixture
was stirred for 30 min and mixed with 50 mL of diethyl ether. The crude
solid was dissolved in 10 mL of acetonitrile, and diethyl ether was dif-
fused into the solution. Cream-colored crystals (10) were obtained, and
the unit cell is identical to the secondary amide structure we reported
earlier[1] (yield: ~70%).
RESULTS – SYNTHESIS AND
CRYSTALLOGRAPHY
Pyrimidine and pyridazine, liquids at room temperature, react in
neat solution together with 1 and perchloric acid to yield the
ammonium adducts 2 and 3. Elemental analyses and mass
spectrometry results are consistent with the formation of the
ammonium salts. Phthalazine, benzo[c]cinnoline, and triphenyl-
phosphine starting materials are solids at room temperature, so
these reactants were dissolved in benzonitrile solvent (itself
unreactive) before addition of 1 and HClO4 to yield compounds
4–6. Chemical structures of 2–6 were also confirmed by X-ray
crystallography by recrystallization in acetonitrile diffused with
diethyl ether (Figs. 1–3). All the ammonium adducts (3, 4, and
5) with two adjacent nitrogens have the uncoordinated nitrogen
pointed towards the anthracenone. This eliminates steric inter-
ference that would occur between the phenyl hydrogen atom
and the anthracenone if the heterocyclic ring was rotated 180ꢀ
about the pyridyl C–N bond. The lower yield of products derived
from neat solution is likely due to a shift in the amount of free
base and acid catalyst towards the protonated salt associated
with the addition of the mineral acid.
We have previously determined that thiophene groups are
more susceptible to substitution at the aromatic alpha-position
when in the presence of alkyl nitriles as a competing nucleo-
phile.[4] We extend this chemistry to include competition reac-
tions between a pyridine or thiophene group in the presence
of primary amides. In either case, the primary amide is left
unreacted. Reaction of thiophene-2-acetamide with 1 in the
presence of sulfuric acid as catalyst produces the thiophene
substituted product 7 where the anthracenone substitutes at
the 2-position of the thiophene ring (crystal structure, Fig. 4).
This leaves a neutral molecule; however, it appears from bond
distances between heavy atoms in the crystal structure that the
amide oxygen is protonated by the catalyst after the reaction is
complete. The anion, hydrogen sulfate, is found rotationally dis-
ordered in a ~60:40 ratio, making it difficult to accurately locate
hydrogen atoms involved in the hydrogen bonding between the
anion and the amide group. However, it is apparent that a very
short O. . .H–O hydrogen bond exists between the hydrogen sul-
fate and the amide oxygen, O7. . .O8 = 2.555(7) Å. The hydrogen
bond distance for the smaller occupancy of the disordered anion
is even shorter, O7. . .O8′ = 2.420 Å. A second hydrogen bond is
Thiophene versus pyridine (benzo(c)cinnoline) nucleophiles
1 (0.5mmol), bithiophene (0.55mmol), and benzo(c)cinnoline (0.55 mmol)
were dissolved in 5 mL of benzonitrile and mixed with five drops 70% per-
chloric acid. The mixture was stirred for 30 min and mixed with 50mL of
diethyl ether. The crude solid was dissolved in 10 mL of acetonitrile, and
diethyl ether was diffused into the solution. Both a cream-colored solid
(11) and yellow-colored crystals (12) were obtained. Compound 11, the
macrocyclic end-capped bithiophene adduct (Scheme 2), has previously
been reported.[4] Compound 12 is protonated benzo(c)cinnoline and was
characterized by single-crystal X-ray analysis. Yield: ~20% of compound
11 and 30% of compound 12 (melting point: 219–222 ꢀC).
Crystallography
X-ray quality crystals were grown from samples dissolved in acetonitrile
and diffused with diethyl ether. Crystallographic data were collected at
100 K using MoKa radiation on a Bruker CCD APEXII diffractometer,
Madison, WI, USA. Cell constants were determined after integration from
typically more than 9000 reflections.[16] Structures were solved by direct
methods using SIR97[17] and refined using SHELXL-97.[18] Data reduction
and refinement were completed using the WinGX suite of crystallo-
graphic software.[19] All hydrogen atoms were placed in ideal positions
and refined as riding atoms with relative isotropic displacement param-
eters, with the exception of hydrogen-bonded protons, which were
found from the difference map. Table 1 lists additional crystallographic
and refinement information. Only the major occupancies of disordered
structures have been diagramed in Figs. 1–3.
[1-Pyridazinium](ClO4)ꢁ0.6H2O (2): There are two pyridazinium
adducts in the asymmetric unit along with one water of hydration with
a 60% occupancy. One perchlorate is disordered over two separate posi-
tions in a 74:26 ratio. The major fractions of the disordered water and
perchlorate participate in a hydrogen bond = 2.868(4) Å, 169(5)ꢀ.
[1-Phthalazinium](ClO4) (4): One-half of the polyether chain is disor-
dered over two positions in a 50:50 ratio.
[1-Benzo[c]cinnolinium](ClO4)ꢁCH3CN (5): One-half of the polyether
chain is disordered in a 60:40 ratio. Refinement of the smaller occupancy
was left isotropic.
[1-(5-(Thiophene-2-acetamide))H](HSO4) (7): Platon Squeeze removed
a disordered solvent molecule present in the structure equal to 140 Å3/61
electrons.[20] This is equivalent to approximately one-half a diethyl ether
O
O
O
O
Bithiophene
Benzo(c) cinnoline
Benzamide
N
S
S
H
ClO4
H
O
NH
Ph
H OH
H
O
O
O
O
O
O
O
O
O
O
O
O
O
O
O
O
+
N
HClO4, PhCN
H
HClO4, CH3CN
O
O
O
O
10
1
11
12
Scheme 2. Competition of bithiophene versus benzo(c)cinnoline derivative and benzamide versus acetonitrile with 1 in the presence of a strong acid
J. Phys. Org. Chem. (2012)
Copyright © 2012 John Wiley & Sons, Ltd.
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