4
B. A. Patel et al. / Bioorg. Med. Chem. Lett. xxx (2013) xxx–xxx
counterpart (1). Also, the 4-phenoxy analog had a MIC of 7.80
l
g/mL
bovine serum (FBS). These results indicated only a twofold increase
in the MIC values with 10% FBS as compared to MIC values ob-
tained in the absence of 10% FBS. These findings suggest that these
compounds do not significantly bind to serum proteins.
Based on the present data, it is evident that (i) a hydrophobic
aromatic group is essential at the third-position of the benzylidene
ring, (ii) the distance between the two aromatic rings is critical,
and (iii) stereochemistry plays a role in the potent anti-MRSA
activity of the tested rhodanine derivatives.
against the newly available MRSA strain ST239 HS770. As a result
of a slight increase in the overall inhibition profile for 2-phenoxy
compound, we incorporated a 3,4-dichloro substitution on the
phenoxy ring (compound 26) in an attempt to obtain enhanced
activity against the various MRSA strains. However, this replace-
ment (MIC = 1.95–7.80 lg/mL) proved to be less active.
Thereafter, we sought to understand the importance of the lin-
ker atom in addition to the length of the linker between the two
aromatic rings. The ether linkage was replaced with –CH2– in
2-benzylbenzylidene and 3-benzylbenzylidene analogs and
–C(@O)– in the 3-benzoylbenzylidene analog in order to identify
the role of the oxygen atom as a linker. The 2-benzylbenzylidene
In our future studies, we will optimize the antibacterial activity
of compounds 37 and 41 with respect to the substitution pattern
on the terminal phenyl ring as well as evaluate the influence of
D-stereochemistry. Furthermore, compound 29, a benzophenone
(compound 27, MIC = 3.90–15.60
ene (compound 29, MIC = 3.90–7.80
found to be ineffective, whereas the 3-benzylbenzylidene analog
(compound 28, MIC = 1.95–3.90 g/mL) had similar antimicrobial
l
g/mL) and 3-benzoylbenzylid-
analog, will be explored for optimal substituents at the terminal
phenyl ring. Compound 29 and its derivatives could serve as photo-
phores to understand the antibacterial mechanism of action. These
data will be reported in a future publication.
l
g/mL) derivatives were
l
efficacy as that of compound 1. Subsequently, the 3-benzyl ring
was substituted with 3,4-dichloro (compound 30, MIC = 15.60–
62.50 lg/mL), but this lead to a decrease in efficacy. Continuing
the aforementioned strategy, we removed the linker and attached
the terminal phenyl ring directly on the benzylidene moiety. This
resulted in 2-phenylbenzylidene analog (compound 31,
Compounds 23, 24, 28, 32, 37, 41, 44, 46, 47 and 48 were found
to be active against globally widespread strains used in this study
including the sasX-positive MRSA strain ST239 HS770. Several aryl-
alkylidene rhodanines have been reported to interact with PBPs29
and all MRSA strains harbor the SCCmec gene that codes for the
PBP2a protein.30–32 Hence, it is possible that these compounds
may produce their anti-MRSA action by inhibiting PBP2a, although
this remains to be proven experimentally.
In summary, lead optimization was attempted using our previ-
ously reported phenylalanine derived rhodanine analogue 1. The
SAR data clearly emphasizes the importance of a hydrophobic aro-
matic substituent on the benzylidene moiety. However, the effect
of the configurational isomerism requires further study. Several
compounds were significantly more efficacious than the reference
antibiotics penicillin G and ciprofloxacin against a panel of MRSA
strains. Among these, three compounds 23, 32, and 44 were highly
efficacious against MRSA ATCC 34404 and MRSA ATCC BAA-39.
Currently, the mechanism of action of the compounds tested in this
study is unknown. Typically, antibiotics can produce a bactericidal
effect by inhibiting cell wall synthesis or DNA synthesis. Thus, it is
possible that the bactericidal compounds in this study could pro-
duce their anti-MRSA activity via these targets, although this re-
mains to be proven.
MIC = 7.80–15.60
However, the 3-phenylbenzylidene (compound 32, MIC = 0.98–
1.95 g/mL) analog was more efficacious in terms of overall anti-
MRSA activity, with an MIC of 0.98 g/mL against MRSA ATCC
34404 and MRSA ATCC BAA39. Based on this, we synthesized the
3,4-dichlorophenyl analog (compound 33, MIC = 1.95–7.80 g/
lg/mL), which was not favorable for activity.
l
l
l
mL), which displayed decreased efficacy. We hypothesized that
the space occupied by the phenyl ring in the 3-phenylbenzylidene
compound was producing ‘steric crowding’ for further substitu-
tion. Therefore, we replaced the phenyl ring with aromatic hetero-
cycles viz. thiazole (compound 34, MIC = 3.90–31.25
lg/mL) and
pyrimidine (compound 35, MIC = 125.0 g/mL) to grasp the nature
l
of the enunciated vicinity. In general, these modifications produced
a significant decrease in the efficacy against the MRSA strains.
These results suggest that aromaticity, coupled with hydrophobic
nature of the terminal phenyl ring, is required for activity against
MRSA. Furthermore, to ascertain the extent of the binding pocket,
we assayed six compounds (36–41) with two, three or four atom
length linkers between the two aromatic rings of compound 1. Of
these compounds, only 3-benzyloxybenzylidene (compound 37,
Acknowledgments
MIC = 1.95–3.90
pound 41, MIC = 1.95
indicating the tolerance of two and four-atom linkers between
the two aryl rings. To further identify the importance of chirality,
l
g/mL) and 3-cinnamyloxybenzylidene (com-
This research was supported by the Department of Pharmaceu-
tical Sciences of St. John’s University and St. John’s University Seed
Grant No. 579-1110 to T.T.T. We also sincerely thank Dr. Michael
Otto, Laboratory of Human Bacterial Pathogenesis, NIAID, NIH, for
providing the SasX strain of S. aureus.
l
g/mL) retained the original activity, thus
we tested the
43, MIC = 1.95–3.90
idene (compound 44, MIC = 0.98–3.90
rophenoxy)benzylidene (compound 45, MIC = 1.95–3.90
ee = 78%), 3-(4-fluorophenoxy)benzylidene (compound 46,
MIC = 1.95 g/mL, ee = 85%), 3-(3,4-dichlorophenoxy)benzylidene
(compound 47, MIC = 1.95 –15.60 g/mL, ee = 93%), 3-benzylben-
zylidene (compound 48, MIC = 1.95–3.90 g/mL) of compounds 1
(MIC = 1.95–3.90 g/mL, ee = 85%), 18 (MIC = 15.60 g/mL,
ee = 93%), 21 (MIC = 7.80–15.60 g/mL, ee = 86%), 22 (MIC =
7.80 g/mL, ee = 84%), 23 (MIC = 0.98–3.90 g/mL, ee = 77%) and
28 (MIC = 1.95–3.90 g/mL), respectively. It seems that a configu-
D
-counterparts 3-phenoxybenzylidene (compound
g/mL, ee = 84%), 3-(3-chlorophenoxy)benzyl-
g/mL, ee = 75%), 3-(4-chlo-
g/mL,
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l
Supplementary data
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Supplementary data associated with this article can be found, in
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References and notes
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rational effect is present only when the terminal ring is substituted
and that the selectivity switches based on the substitution pattern,
with the
D
-analog being preferred if monosubstituted and the
L-analog upon disubstitution of the terminal phenyl ring. Further-
more, to probe the effect of serum protein binding, we determined
the MIC values (data not shown) of the most potent compounds,
23, 32 and 44 against all MRSA strains in the presence of 10% fetal