The Journal of Organic Chemistry
Article
H2O (200 mL) was added to the mixture, which was then washed with
diethyl ether (300 mL). The pH of the solution was adjusted to 11 by
adding sodium hydroxide, and extracted with CHCl3 (100 mL × 3).
The combined organic phase was washed with 5% aqueous sodium
hydroxide (50 mL) and saturated aqueous sodium chloride (50 mL) in
this sequence. After being dried (Na2SO4), the solution was
evaporated to dryness under reduced pressure to give a pale yellow
N8O16S4·H2O: C, 55.11; H, 5.70; N, 8.57. ESI-TOF MS: m/z 1289.44
[M + H]+.
Reduced Form of 1a (6). Dithiothreitol (18 mg, 0.12 mmol, 12
equiv) was added to a solution of 1a (15 mg, 0.01 mmol) in methanol
(2 mL), and the resulting mixture was stirred for 4 days at room
temperature. The solution was evaporated to dryness under reduced
pressure. The crude product was purified by gel filtration
chromatography on a column of Sephadex LH-20 with methanol as
an eluent. Evaporation of the product fraction under reduced pressure
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solid. 300 mg (38%): mp 146−149 °C. H NMR (400 MHz, CDCl3,
298 K) δ 1.73 (s, 8H), 3.17 (m, 8H), 3.83 (t, 4H), 6.48 (d, 8H), and
7.27 (d, 8H). 13C NMR (100 MHz, CDCl3, 298 K) δ 27.1, 43.5, 113.2,
124.3, 134.5, and 148.8. IR 3395 cm−1 (N−H). Found: C, 63.57; H,
6.08; N, 9.02. Calcd for C32H36N4S4: C, 63.54; H, 6.00; N, 9.26. ESI-
TOF MS: m/z 639.05 [M + Cl]−.
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gave a white solid. (19 mg, quantitative): mp 60−63 °C. H NMR
(400 MHz, CD3OD, 298 K) δ 1.50 (m, 4H), 2.40 (t, 4H), 3.08 (m,
4H), 3.34 (s, 2H), 3.69 (m, 4H), 7.07 (d, 8H), and 7.38 (d, 8H). 13C
NMR (100 MHz, CD3OD, 298 K) δ 25.6, 31.3, 35.8, 128.1, 128.4,
128.8, 129.2, 129.9, 170.1, and 170.3. IR 1630 cm−1 (CO), 1174
cm−1 (N−H). Found: C, 45.24; H, 4.94; N, 7.84. Calcd for
C26H32F6N4O6S2·H2O: C, 45.08; H, 4.95; N, 8.09. ESI-TOF MS:
m/z 469.10 [M + Na]+, where M denotes the diamine derivative of
cyclophane as the free base.
Cyclophane Bearing Boc-Protected Amines (5). Dicyclohexyl-
carbodiimide (99 mg, 0.48 mmol) was added to a solution of Boc-β-
Ala-OH (91 mg, 0.48 mmol) in dry dichloromethane (DCM, 2 mL) at
0 °C, and the mixture was allowed to stand at the same temperature
while being stirred for 20 min. The mixture was added to a solution of
4 (47 mg, 0.08 mmol,) in dry DCM (5 mL), and the resulting mixture
was stirred for 3 days at room temperature. Precipitates that formed
(N,N′-dicyclohexylurea) were removed by filtration, the solvent was
eliminated under reduced pressure, and the residue was dissolved in
EtOAc (20 mL). Insoluble materials were removed by filtration, and
the filtrate was evaporated to dryness under reduced pressure. The
residue was chromatographed on a column of silica gel (SiO2) with
EtOAc as an eluent. Evaporation of the product fraction under reduced
pressure gave a white solid. 65 mg (63%): mp 100−103 °C. 1H NMR
(400 MHz, CDCl3, 298 K) δ 1.42 (s, 44H), 1.46 (s, 8H), 2.12 (m,
8H), 3.26 (m, 8H), 3.65 (m, 8H), 5.26 (m, 4H), 7.02 (d, 8H), and
7.49 (d, 8H). 13C NMR (100 MHz, CDCl3, 298 K) δ 25.0, 28.7, 35.1,
36.6, 48.7, 79.3, 128.1, 129.2, 137.0, 141.2, 156.1, and 171.6. IR 1645
cm−1 (CO), 3332 cm−1 (N−H), 1166 cm−1 (C−O, Boc). Found:
C, 58.81; H, 6.83; N, 8.63. Calcd for C64H88N8O12S4·H2O: C, 58.78;
H, 6.94; N, 8.63. ESI-TOF MS: m/z 1311.03 [M + Na]+.
Binding Constants of Cyclophane with Fluorescence Guests.
To each solution of a fluorescent guest (1.0 μM) in HEPES buffer
were added increasing amounts of the hosts at 298 K, and the guest
fluorescence intensity was monitored after each addition by excitation
at 390, 322, 322, 460, and 460 nm for Bis-ANS, PBA, PMA, DNR, and
DOX, respectively. An aqueous stock solution of 1b was prepared after
addition of NaOH. The binding constants were calculated on the basis
of the Benesi−Hildebrand method for titration data.
Computational Procedure. The calculations were carried out on
a Pentium 4 3.2 GHz x 2 machine using MacroModel 9.1 molecular
modeling software on a Red Hat Enterprise Linux WS 4.3 operating
system. Molecular mechanics and molecular dynamics methods were
utilized at arriving at the optimized structures. The geometry of 1a and
1b was optimized using molecular mechanics employing the
OPLS_2005 force field for the simulation of the hosts. The geometry
was optimized without any constraints, allowing all atoms, bonds, and
dihedral angles to change simultaneously. The dielectric was set to
distance dependent with a scale factor of 1. A 1 ps molecular dynamics
was carried out in vacuo using the molecular mechanics OPLS_2005
force field under constant temperature conditions (300 K).
Cationic Cyclophane Having Disulfide Moieties (1a).
Trifluoroacetic acid (TFA, 0.25 mL) was added to a solution of
compound 5 (65 mg, 0.05 mmol) in dry DCM (1.5 mL), and the
mixture was stirred for 2 h at room temperature. After the solvent was
evaporated off under reduced pressure, DCM (5 mL) was added to the
residue, and this procedure was repeated three times to remove
remaining TFA. Evaporation of the solvent under reduced pressure
gave a pale white solid. The crude product was purified by gel filtration
chromatography on a column of Sephadex LH-20 with methanol as an
eluent. Evaporation of the product fraction under reduced pressure
gave a white solid (triamine derivative of cyclophane as the
ASSOCIATED CONTENT
* Supporting Information
■
S
NMR spectra for compounds 3, 4, 5, 1a, 1b, and 6; Job plots;
and additional fluorescence titration spectra. This material is
1
trifluoroacetic acid salt). 59 mg (88%): mp 118−121 °C. H NMR
AUTHOR INFORMATION
Corresponding Author
(400 MHz, CD3OD, 298 K) δ 1.49 (m, 8H), 2.40 (t, 8H), 3.09 (t,
8H), 3.71 (m, 8H), 7.24 (d, 8H), and 7.60 (d, 8H). 13C NMR (100
MHz, CD3OD, 298 K) δ 24.4, 31.4, 35.7, 118.5, 28.1, 129.2, 137.1,
140.7, 161.6, and 170.1. IR 1634 cm−1 (CO). Found: C, 44.75; H,
4.75; N, 8.13. Calcd for C52H60F12N8O12S4·3H2O: C, 44.63; H, 4.75;
N, 8.01. ESI-TOF MS: m/z 889.32 [M + H]+, where M denotes the
tetraamine derivative of cyclophane as the free base.
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Notes
The authors declare no competing financial interest.
ACKNOWLEDGMENTS
Anionic Cyclophane Having Disulfide Moieties (1b). Succinic
anhydride (119 mg, 1.20 mmol) was added to a solution of 1a (200
mg, 0.15 mmol) and triethylamine (0.2 mL) in dry DCM (4 mL) at
room temperature, and the mixture was stirred for 1 day. The solution
was evaporated to dryness under reduced pressure to give a white
solid. The crude product was purified by gel filtration chromatography
on a column of Sephadex LH-20 with methanol as an eluent.
Evaporation of the product fraction under reduced pressure gave a
white solid. The resulting sodium salt was converted into the free acid
by ion-exchange chromatography on a column of Amberlite IR-120B
with methanol as an eluent. Evaporation of the product fraction under
reduced pressure gave a white solid. 160 mg (83%): mp 96−98 °C. 1H
NMR (400 MHz, CD3OD, 298 K) δ 1.47 (s, 8H), 2.20 (t, 8H), 2.38
(t, 8H), 2.52 (t, 8H), 3.67 (m, 8H), 7.17 (d, 8H), and 7.56 (d, 8H).
13C NMR (100 MHz, CD3OD, 298 K) δ 24.6, 29.0, 30.3, 33.9, 35.6,
51.0, 128.3, 129.2, 136.7, 141.4, 171.6 173.3, and 175.0. IR 1727 cm−1
(COOH). Found: C, 55.27; H, 5.87; N, 8.65. Calcd for C60H72-
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The present work is partially supported by a Grant-in-Aid (No.
24550166) from the Ministry of Education, Culture, Science,
Sports and Technology of Japan.
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dx.doi.org/10.1021/jo400591w | J. Org. Chem. XXXX, XXX, XXX−XXX