Bioorganic & Medicinal Chemistry Letters
Regioselective synthesis of 3-benzyl substituted pyrimidino
chromen-2-ones and evaluation of anti-microbial and anti-biofilm
activities
a
b
Narender Reddy Emmadi a, Krishnaiah Atmakur a, , Chiranjeevi Bingi , Narender Reddy Godumagadda ,
⇑
Chityal Ganesh Kumar b, Jagadeesh Babu Nanubolu c
a Division of Crop Protection Chemicals, CSIR-Indian Institute of Chemical Technology, Tarnaka, Hyderabad 500007, India
b Medicinal Chemistry and Pharmacology Division, CSIR-Indian Institute of Chemical Technology, Tarnaka, Hyderabad 500007, India
c Laboratory of X-ray Crystallography, CSIR-Indian Institute of Chemical Technology, Tarnaka, Hyderabad 500007, India
a r t i c l e i n f o
a b s t r a c t
Article history:
Regioselective synthesis of a number of highly functionalized 3-benzylpyrimidino chromen-2-ones (4)
were accomplished in a one pot three component reaction in acetic acid and determined their anti-micro-
bial and anti-biofilm activities. Compounds 4o and 4p showed an excellent anti-microbial activity against
Micrococcus luteus MTCC 2470 at a par with standard control (Ciprofloxacin) and exhibited best activity
against Staphylococcus aureus MTCC 96 and Bacillus subtilis MTCC 121. Further, compounds 4h, 4i, 4m, 4n
and 4q showed promising activity against Micrococcus luteus MTCC 2470, Staphylococcus aureus MTCC 96
and Bacillus subtilis MTCC 121. Whereas, compounds 4m showed very promising biofilm inhibition activ-
ity against Staphylococcus aureus MLS 16 MTCC 2940 and 4o, 4p showed very potent activity against
Staphylococcus aureus MTCC 96 at a par with Ciprofloxacin used as standard control.
Received 25 September 2013
Revised 4 December 2013
Accepted 10 December 2013
Available online 15 December 2013
Keywords:
6-Amino uracil
4-Hydroxy coumarin
Aldehydes
3-Benzyl substituted pyrimidino chromen-
2-ones
Ó 2013 Elsevier Ltd. All rights reserved.
Chromen-2-ones are an important class of heterocycles which
are omnipresent in natural products and synthetic origin as well.
Chromen-2-one also called as coumarin known to exhibit a broad
spectrum of biological activities such as anticancer, anti-inflamma-
tory, antioxidant, antimicrobial and anticoagulant activities.1–3
Among the coumarins family, 3-substituted-4-hydroxy coumarins
have gained popularity. More specifically, 3-benzyl substituted
4-hydroxy coumarins have received much importance due to its
abundance in medicinal scaffolds like warfarin, phenprocumon
and novobiocin (Fig. 1). Further, 3-aryl substituted coumarins have
been attractive research candidates owing to their application as
additives in food, perfumes and cosmetics.4
Similarly, pyrimidine moiety is an important class of N-contain-
ing heterocycles and widely used as key building blocks for phar-
maceutical agents. It is known to exhibit wide spectrum of
pharmacophores as it acts as analgesic,5 antifungal,6 anti-hyper-
tensive and anti-tumor7 agents (Fig. 1).
moiety as a core unit are important targets and are known to exhi-
bit various pharmaceutical activities.10–12
In view of the biological significance of coumarin and pyrimi-
dine moieties and also as
a part of our ongoing research
programme on the bioactive coumarin derivatives,13 we planned
to take-up the synthesis of 3-benzyl substituted pyrimidino cou-
marins as a molecular scaffold and determine anti-microbial and
anti-biofilm activities. In this context, literature review at this
stage revealed that a number of methods is available on the
synthesis of pyranochromenes,14 benzylpyrazolylcoumarins15 and
pyridine based coumarins.16 However, it is surprising to note that
there are no reports available on a molecular skeleton having
pyrimidine and coumarin fragments joined through a benzyl
functional. With this background, herein report for the first time,
synthesis of highly functionalized 3-benzyl substituted pyrimidino
chromen-2-ones (4) and their anti-microbial and anti-biofilm
activity studies.
Further, natural products with a pyrimidine skeleton such as
Initially a model reaction was conducted with 6-amino-1,3-di-
methyl uracil (1) (1.0 mmol), 4-cyano benzaldehyde (2) (1.1 mmol)
and 4-hydroxy-6-methyl coumarin (3a) (1.0 mmol) under solvent
free condition at 130 °C for 2 h (Table 1, entry 1). Interestingly,
the formation of two products 4 and 5 were observed in 30 and
20% yields. Subsequently, a series of reactions were conducted to
optimize the reaction conditions for exclusive formation of 4 by
8
vitamin B1 and nucleotide bases9 play an important role in life
science studies. In addition, organic compounds with pyrimidine
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Corresponding author. Tel.: +91 40 27191436; fax: +91 40 27193382.
0960-894X/$ - see front matter Ó 2013 Elsevier Ltd. All rights reserved.