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0.94 mmol, 8.0 equiv) in CH2Cl2 (1.18 mL). The reaction mixture was
stirred for 4 h and monitored by LC-MS. Upon completion, the
crude product was purified by using preparative HPLC to generate
pure the biotinylated compound as a white solid (25 mg, 17.3%).
cyclo-Lys(Boc)-N-Me-Val-d-3-(4-thiazolyl)-Ala-d-Phe-3,3-diphenyl-
d-Ala: The product was generated by using DDLP SM258-Tag-II
(0.40 g, 0.45 mmol, 1.0 equiv), TBTU (0.10 g, 0.32 mmol, 0.70 equiv),
HATU (0.21 g, 0.54 mmol, 1.20 equiv), DMTMM (0.063 g, 0.23 mmol,
0.50 equiv), and DIPEA (0.63 mL, 3.62 mmol, 8.0 equiv) in anhy-
drous CH2Cl2 (452 mL, 0.001m) and following the macrocyclization
procedure. The reaction was stirred overnight and the reaction was
monitored by TLC and LC-MS. Upon completion, the reaction mix-
ture was subjected to an acid/base wash to afford the crude prod-
uct, which was purified by flash column chromatography on silica
gel with an ethyl acetate/hexane gradient system as the eluent,
followed by purification by HPLC to yield the Boc-protected macro-
cycle as a white solid (82 mg, 20.9%). LC-MS (ESI): m/z calcd for
C47H59N7O7S: 866.42 [M+1]; found: 866.05.
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Rf =0.38 (EtOAc/MeOH=1:1); H NMR (600 MHz, CDCl3): d=8.89 (s,
1H), 8.25 (br; NH), 7.57 (d, J=8.6 Hz; NH), 7.44 (d, J=7.5 Hz; NH),
7.36–7.14 (m, 10H), 7.07 (br; NH), 6.90 (m; NH), 6.76 (m; NH), 5.21
(t, J=10.3 Hz, 1H), 4.83 (d, J=10.6 Hz, 1H), 4.73 (d, J=10.3 Hz,
1H), 4.59–4.51 (m, 3H), 4.40 (m, 2H), 4.02 (m, 1H), 3.74 (m, 3H),
3.64–3.61 (m, 13H), 3.42 (m, 3H), 3.27 (m, 2H), 3.20 (m, 3H), 3.12
(m, 2H), 2.96 (m, 1H), 2.83 (m, 5H), 2.47 (m, 2H), 2.32 (m, 1H), 2.24
(m, 2H), 1.72–1.61 (m, 6H), 1.50 (m, 4H), 1.29 (m, 1H), 0.83–
0.72 ppm (m, 12H); 13C NMR (150 MHz, CDCl3): d=173.3, 171.4,
170.9, 170.5, 170.1, 169.5, 164.4, 152.7, 152.5, 140.9, 140.7, 128.8,
128.6, 128.2, 127.9, 127.1, 127.0, 115.9, 70.6, 70.5, 70.4, 70.3, 70.2,
70.1, 69.8, 67.5, 63.4, 62.2, 62.1, 60.2, 58.4, 57.5, 55.9, 55.6, 51.9,
50.5, 49.5, 40.8, 39.3, 37.1, 35.9, 32.1, 31.8, 30.9, 29.1, 28.2, 26.0,
25.6, 24.8, 23.0, 22.8, 22.5, 22.4, 19.8, 19.1 ppm; LC-MS (ESI): m/z
calcd for C60H88N10O12S2: 1205.60 [M+1]; found: 1205.00 [M+1],
603.00 (half mass); HRMS (ESI-TOF): m/z calcd for C60H88N10O12S2Na:
1227.5922 [M+Na+]; found: 1227.5918.
The Boc protecting group of the macrocycle was removed by uti-
lizing a mixture of TFA/CH2Cl2 (1:4, 0.1m) and anisole (2.0 equiv) to
generate free amine groups in the lysine residue. The free amine
compound was used in the subsequent biotinylation reaction with-
out purification. LC-MS (ESI): m/z calcd for C42H51N7O5S: 766.37
[M+1]; found: 766.00.
The biotinylated SM258-Tag-II was afforded by using the depro-
tected macrocycle (40 mg, 0.052 mmol, 1.0 equiv), NHS-(PEG)4-
Biotin (43 mg, 0.073 mmol, 1.4 equiv), and DIPEA (72.8 mL,
0.42 mmol, 8.0 equiv) in CH2Cl2 (522 mL). The reaction mixture was
stirred for 4 h and monitored by LC-MS. Upon completion, the
crude product was purified by using preparative HPLC to generate
pure biotinylated compound as a white solid (7.8 mg, 12.1%). Rf =
0.38 (EtOAc/MeOH=1:1); 1H NMR (600 MHz, DMSO): d=8.96 (d,
J=1.9 Hz, 1H), 8.27 (d, J=8.2 Hz; 2NH), 7.84 (t, J=5.6 Hz; NH),
7.76 (m; 2NH), 7.74 (t, J=5.4 Hz; NH), 7.23–7.15 (m, 13H), 6.88 (m,
2H), 6.42 (s, 1H), 6.36 (s, 1H), 5.15 (m, 1H), 4.99 (dd, J=15.0,
8.0 Hz, 1H), 4.52 (d, J=11.3 Hz, 1H), 4.31 (m, 2H), 4.13 (m, 1H),
4.05 (m, 1H), 3.59 (t, J=6.4 Hz, 2H), 3.50 (m, 14H), 3.40 (t, J=
5.9 Hz, 2H), 3.19 (dd, J=11.7, 5.8 Hz, 1H), 3.10 (m, 1H), 2.91 (m,
4H), 2.82 (dd, J=12.4, 5.1 Hz, 1H), 2.69 (dd, J=14.0, 6.3 Hz, 1H),
2.62 (m, 3H), 2.59 (m, 2H), 2.29 (t, J=6.7 Hz, 2H), 2.07 (t, J=7.5 Hz,
2H), 1.61 (m, 2H), 1.51 (m, 4H), 1.31 (m, 4H), 0.92 (m, 2H), 0.81 (d,
J=6.4 Hz, 3H), 0.59 ppm (d, J=6.6 Hz, 3H); 13C NMR (150 MHz,
DMSO): d=172.6, 170.6, 170.2, 170.1, 169.9, 169.8, 168.9, 163.2,
154.0, 153.5, 141.7, 141.1, 137.7, 129.2, 129.1, 129.0, 128.8, 128.6,
128.4, 127.1, 126.9, 126.8, 115.4, 70.3, 70.2, 70.1, 70.0, 69.9, 69.6,
67.4, 67.3, 62.9, 61.5, 60.2, 59.7, 57.3, 56.7, 55.9, 53.9, 53.7, 49.4,
40.5, 40.3, 38.9, 37.7, 36.6, 35.6, 33.5, 30.2, 29.2, 28.7, 28.5, 25.7,
25.3, 23.6, 21.2, 20.0, 19.8 ppm; LC-MS (ESI): m/z calcd for
C63H86N10O12S2: 1239.59 [M+1] [M+1]; found: 606.00 (half mass)
[M+1]; HRMS (ESI-TOF): m/z calcd for C63H86N10O12S2Na: 1261.5766
[M+Na+]; found: 1261.5763.
Experimental methods for SM253-Tag-IV dimer
SM253-Tag-IV dimer: The product was synthesized by utilizing
cyclo-Leu-N-Me-Val-d-Lys-d-3-(4-thiazolyl)-Ala-3,3-diphenyl-d-Ala
(31.2 mg, 0.043 mmol, 1.0 equiv), BS(PEG)9 (15.1 mg, 0.021 mmol,
0.5 equiv), and DIPEA (59.4 mL, 8.0 equiv) dissolved in CH2Cl2
(426 mL). The crude material was purified by using HPLC to obtain
the product (5 mg, 6%). 1H NMR (600 MHz, DMSO): d=8.93 (m,
2H), 8.39 (m; 2NH), 7.56–7.16 (m, 24H), 6.87 (m, 2H), 6.67 (m;
2NH), 5.06 (m; 2NH), 4.87 (m; 2NH), 4.62 (m; 2NH), 4.46 (m, 2H),
4.21 (m; 2NH), 3.64 (m, 34H), 3.22 (m, 6H), 2.80 (m, 6H), 2.49 (m,
8H), 1.48 (m, 10H), 1.25 (m, 14H), 0.99–0.74 ppm (m, 24H);
13C NMR (150 MHz, DMSO): d=171.6, 171.5, 171.4, 171.3, 170.8,
170.6, 152.2, 141.1, 140.5, 128.9, 128.8, 128.6, 128.2, 127.1, 126.9,
116.5, 70.6, 70.5, 70.4, 70.3, 70.2, 67.4, 59.5, 58.1, 49.4, 39.1, 39.0,
38.2, 37.0, 31.9, 31.6, 31.2, 29.8, 28.8, 26.1, 22.8, 22.7, 19.8,
19.7 ppm; LC-MS (ESI): m/z calcd for C100H144N14O21S2: 1942.01 [M+
1]; found: 993.00 (half mass); HRMS (ESI-TOF): m/z calcd for
C100H144N14O21S2 1942.0072 [M+H+]; found: 1943.0162.
Experimental methods for SM258-Tag-II
HO-Lys(Boc)-N-Me-Val-d-3-(4-thiazolyl)-Ala-d-Phe-3,3-diphenyl-d-
Ala-NH2: Resin-O-Lys(Boc)-N-Me-Val-d-3-(4-thiazolyl)-Ala-d-Phe-3,3-
diphenyl-d-Ala-NH2 was synthesized by using resin-O-Lys(Boc)-NH2
(1.0 g, 0.5 mmol, 1.0 equiv), and the subsequent peptide coupling
in the sequence was carried out by using an aliquot (1.5 mmol,
3.0 equiv) of each of the following: Fmoc-N-Me-Val-OH (0.53 g),
Fmoc-d-3-(4-thiazolyl)-Ala-OH (0.59 g), Fmoc-d-Phe-OH (0.58 g),
and Fmoc-3,3-diphenyl-d-Ala-OH (0.70 g). Each peptide coupling
was carried out in the presence of HOAt (0.20 g, 1.5 mmol,
3.0 equiv) or HOBt (0.20 g, 1.5 mmol, 3.0 equiv), DIC (0.47 mL,
3.0 mmol, 6.0 equiv), and DMF (2.5 mL) to generate a concentration
of 0.20m based on the amino acid. Each coupling reaction was car-
ried out for 3 h, and a negative ninhydrin test was used to confirm
the reaction completion. The Fmoc protecting group was removed
after the completion of each coupling reaction. The DDLP SM258-
Tag-II was cleaved from the resin by using a solution of TFE (6 mL)
and CH2Cl2 (6 mL). The resin-containing solution was filtered and
dried in vacuo to yield the DDLP SM258-Tag-II as a white solid
(400 mg, 90.5%). LC-MS (ESI): m/z calcd for C47H61N7O8S: 884.43
[M+1]; found: 884.10.
Experimental methods for SM258-Tag-III
HO-Leu-N-Me-Lys(Boc)-d-3-(4-thiazolyl)-Ala-d-Phe-3,3-diphenyl-
d-Ala-NH2: Resin-O-Leu-N-Me-Lys(Boc)-d-3-(4-thiazolyl)-Ala-d-Phe-
3,3-diphenyl-d-Ala-NH2 was synthesized by using resin-O-Leu-NH2
(1.0 g, 0.5 mmol, 1.0 equiv) and the subsequent peptide coupling
in the sequence by using an aliquot (1.5 mmol, 3.0 equiv) of each
of the following: Fmoc-N-Me-Lys(Boc)-OH (0.72 g), Fmoc-d-3-(4-
thiazolyl)-Ala-OH (0.59 g), Fmoc-d-Phe-OH (0.58 g), and Fmoc-3,3-
diphenyl-d-Ala-OH (0.70 g). Each peptide coupling was carried out
in the presence of HOAt (0.20 g, 1.5 mmol, 3.0 equiv) or HOBt
(0.20 g, 1.5 mmol, 3.0 equiv), DIC (0.47 mL, 3.0 mmol, 6.0 equiv),
and DMF (2.5 mL) to generate a concentration of 0.20m based on
the amino acid. Each coupling reaction was carried out for 3 h, and
a negative ninhydrin test was used to confirm the reaction comple-
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Chem. Eur. J. 2016, 22, 1 – 12
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