SHORT COMMUNICATION
(400 MHz, CDCl3): δ = 8.14 (s, 1 H, H5*), 7.93 [d, 2 H, Hmeta(Tol)],
7.90 (s, 1 H, H3*), 7.84 [d, 2 H, Hmeta(Tol)], 7.82 (s, 1 H, H5), 7.24
[m, 4 H, Hortho(Tol)], 6.45 (t, 1 H, H1Ј), 5.75 (d, 1 H, H3Ј), 5.39
(m, 2 H, CH2), 4.65 (q, 1 H, H4Ј), 4.61 (dd, 2 H, H5Ј, H5ЈЈ), 3.19
(dt, 1 H, H2Ј or H2ЈЈ), 2.86 (ddd, 1 H, H2Ј or H2ЈЈ), 2.43 [s, 3 H,
CH3(Tol)], 2.41 [s, 3 H, CH3(Tol)] ppm. 13C NMR (100 MHz,
CDCl3): δ = 166.1 (C=O), 164.9 (C=O), 152.2 (C3*), 144.6 (Tol),
144.2 (Tol), 143.3 (C4), 142.1 (C5*), 129.8 (Tol), 129.7 (Tol), 129.3
(Tol), 126.6 (Tol), 126.3 (Tol), 122.0 (C5), 118.9 (C5), 89.1 (C1Ј),
83.9 (C4Ј), 74.7 (C3Ј), 63.9 (C5Ј), 44.8 (CH2), 38.3 (C2Ј), 21.7
[CH3(Tol)] ppm. C26H26N6O5 (502.52): calcd. C 62.14, H 5.20, N
16.72; found C 62.17, H 5.21, N 16.47. HRMS: calcd. for [M +
Na]+ 525.1862; found 525.1858.
Conclusions
An artificial nucleoside that combines one 1,2,4-triazole
entity with one 1,2,3-triazole moiety has been devised with
the bidentate ligand tritri. This nucleoside forms a stable
silver(I)-mediated base pair with a complementary imid-
azole nucleoside. The canonical pyrimidine nucleosides are
not able to form metal-mediated base pairs with tritri.
Moreover, silver(I) is the only transition metal ion that was
found to stabilize the tritri:imi base pair. The resulting
tritri–AgI–imi system represents the first metal-mediated
base pair with a [2+1] coordination environment. A DNA
duplex comprising such a base pair is stabilized by 6 °C
with respect to the metal-free duplex. The only previous
example for a silver(I) coordinated in a trigonal planar
fashion inside DNA is a triple helix with a [1+1+1] coordi-
nation environment.[11] For that system, a stabilization of
only 2 °C has been reported despite the use of excess sil-
ver(I). Hence, the tritri–AgI–imi base pair is significantly
more stable than any previously reported DNA system with
trigonally coordinated silver(I). By introducing the [2+1]
coordination environment, the scope of metal-mediated
base pairs is extended also towards tricoordinate metal ions.
Free Nucleoside 2: Compound 1 (3.34 g, 6.64 mmol) was dissolved
in a mixture of methanol (100 mL) and aqueous NH3 (50 mL).
After stirring overnight at room temperature the solvent was evapo-
rated, and the crude solid was purified by column chromatography
to obtain the desired product 2 as a white solid (1.68 g; 6.29 mmol,
1
95%). H NMR (400 MHz, CD3OD): δ = 8.59 (s, 1 H, H5*), 8.29
(s, 1 H, H3*), 8.01 (s, 1 H, H5), 6.44 (t, 1 H, H1Ј), 5.60 (s, 2 H,
CH2), 4.56 (q, 1 H, H3Ј), 4.05 (q, 1 H, H4Ј), 3.74 (dd, 1 H, H5Ј or
H5ЈЈ), 3.65 (dd, 1 H, H5Ј or H5ЈЈ), 2.79 (m, 1 H, H2Ј or H2ЈЈ),
2.54 (m, 1 H, H2Ј or H2ЈЈ) ppm. 13C NMR (100 MHz, CD3OD):
δ = 152.5 (C3*), 145.1 (C5*), 130.5 (C4), 124.1 (C5), 90.3 (C1Ј),
89.7 (C4Ј), 72.1 (C3Ј), 63.1 (C5Ј), 45.4 (CH2), 41.7 (C2Ј) ppm.
C10H14N6O3 (266.26) for 2·0.25H2O: calcd. C 44.34, H 5.40, N
31.05; found C 44.10, H 5.19, N 30.84. HRMS: calcd. for [M +
Na]+ 289.1025; found 289.1016.
Experimental Section
General: DNA syntheses were performed in the DMT-off mode
with a K&A Laborgeräte H8 DNA/RNA synthesizer by following
standard protocols according to a recently published procedure.[10b]
The oligonucleotides were identified by MALDI-TOF mass spec-
trometry [purine-rich sequence: calcd. for (M + H)+ 4118 Da,
found 4121 Da; pyrimidine-rich sequence with Y = imi: calcd. for
(M + H)+ 3744 Da, found 3745 Da; pyrimidine-rich sequence with
Y = C: calcd. for (M + H)+ 3787 Da, found 3788 Da; pyrimidine-
rich sequence with Y = T: calcd. for (M + H)+ 3802 Da, found
3803 Da]. MALDI-TOF mass spectra were recorded with a Bruker
Reflex IV instrument by using a 3-hydroxypicolinic acid/ammo-
nium citrate matrix and applying a commercially available oligonu-
cleotide with a molecular mass of 4577 Da as internal reference.
NMR spectra were recorded with Bruker Avance(I) 400 and Bruker
Avance(III) 400 spectrometers at 300 K. Chemical shifts were refer-
enced to residual CD3OH (CD3OD, δ = 4.78 ppm) or TMS
(CDCl3, δ = 0 ppm). UV/Vis spectra were recorded with a Varian
CARY BIO 100 spectrophotometer. CD spectra were recorded at
10 °C with a Jasco J-815 spectrometer. The CD spectra were
smoothed, and a manual baseline correction was applied. 2-Deoxy-
3,5-di-O-(p-toluoyl)-β-d-erythro-pentafuranosyl azide and 1-pro-
pargyl-1H-1,2,4-triazole were prepared according to literature pro-
cedures.[14]
DMT-protected tritri Nucleoside 3: Compound
2
(1.67 g,
6.29 mmol) was co-evaporated thrice with dry pyridine (20 mL)
and then dissolved in dry pyridine (50 mL). To this reaction mix-
ture were added catalytic amounts of DMAP under an argon atmo-
sphere, followed by the addition of DMT-Cl (2.94 g, 7.55 mmol).
The mixture was stirred for 3 h at room temperature. The solution
was diluted with CH2Cl2 (100 mL) and washed with water (3ϫ
20 mL). The organic phase was dried (Na2SO4), and the solvents
were evaporated to dryness. The crude product was purified with
column chromatography to obtain 3 as a white foam (3.14 g,
1
5.53 mmol, 88%). H NMR (400 MHz, CDCl3): δ = 8.03 (s, 1 H,
H5), 7.84 (d, 2 H, H3*, H5*), 7.33 (m, 2 H, DMT), 7.25–7.19 (m,
7 H, DMT), 6.79 (d, 2 H, DMT), 6.32 (t, 1 H, H1Ј), 5.27 (d, 2 H,
CH2), 4.63 (m, 1 H, H3Ј), 4.13 (m, 1 H, H4Ј), 3.77 (s, 6 H, O-CH3),
3.31 (m, 2 H, H5Ј, H5ЈЈ), 2.80 (m, 1 H, H2Ј or H2ЈЈ), 2.53 (m, 1
H, H2Ј or H2ЈЈ) ppm. 13C NMR (100 MHz, CDCl3): δ = 158.5
(DMT), 151.6 (C3*), 144.4 (C5*), 143.0 (DMT), 141.4 (C4), 135.5
(DMT), 135.4 (DMT), 130.0 (DMT), 129.3 (DMT), 128.4 (DMT),
128.1 (DMT), 127.8 (DMT), 126.9 (DMT), 121.9 (C5), 113.1
(DMT), 88.8 (C1Ј), 86.6 (C4Ј), 70.8 (C3Ј), 63.2 (C5Ј), 55.2 (OCH3),
44.6 (CH2), 40.8 (C2Ј) ppm. HRMS: calcd. for [M + Na]+
591.2332; found 591.2334.
Toluoyl-Protected tritri Nucleoside 1: To a mixture of 1-propargyl-
1H-1,2,4-triazole (964 mg, 9.63 mmol) and 2-deoxy-3,5-di-O-(-p-
toluoyl)-β-d-erythro-pentafuranosyl azide (3.17 g, 8.03 mmol) in
Orthogonally Protected tritri Nucleoside 4: Compound 3 (724 mg,
1.27 mmol) was dissolved in freshly distilled CH2Cl2 (35 mL). To
this solution were added DIPEA (650 μL, 3.82 mmol) and CEDIP-
Cl (568 μL, 2.55 mmol) under an argon atmosphere. After 30 min
of stirring at room temperature the mixture was diluted with
EtOAc (75 mL). The organic phase was washed with saturated
aqueous NaHCO3 solution (30 mL) and dried (MgSO4). The solu-
tion was concentrated to dryness. Column chromatography gave 4
THF/2-propanol (40 mL, 4:1) were added
a solution of
CuSO4·5H2O (402 mg, 1.61 mmol) in H2O (8 mL) and sodium as-
corbate (636 mg, 3.21 mmol). After stirring for 12 h at room tem-
perature, the reaction was quenched by addition of EtOAc
(150 mL). The organic layer was washed with aqueous EDTA solu-
tion (0.5%) until the aqueous layer was colorless. The organic
phase was dried (MgSO4). After filtration the solvent was removed.
The crude product was purified by column chromatography, and 1
1
as a yellowish oil (887 mg, 1.15 mmol, 90%). H NMR (400 MHz,
CDCl3): δ = 7.96 (s, 1 H, H5), 7.79 (s, 2 H, H5*, H3*), 7.27 (m, 2
H, DMT), 7.20–7.12 (m, 8 H, DMT), 6.72 (m, 2 H, DMT), 6.28
(t, 1 H, H1Ј), 5.22 (m, 2 H, CH2), 4.67 (m, 1 H, H3Ј), 4.16 (m, 1
1
was obtained as a white solid (3.34 g, 6.65 mmol, 83%). H NMR
Eur. J. Inorg. Chem. 2014, 437–441
440
© 2014 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim