Verlamelin A and B
K-i Ishidoh et al
462
and the antifungal activity among these cyclic peptide compounds, Stereochemistry of amino acids constituting verlamelin A and B
One milligram of aliquots of 1 or 2 were hydrolyzed by heating at 115 1C for
8 h in 10ml of 6 M HCl. After cooling to room temperature, they
were completely dried in vacuo and dissolved in 150 ml of water. Marfey’s
reagent (300 ml of 10mgmlꢁ1 solution in acetone) (Na-(2,4-dinitro-5-fluor-
ophenyl)-L-alaninamide) (Tokyo Chemical Industry Co., Ltd., Tokyo, Japan)
was added, followed by the addition of 70ml of 1 M NaHCO3. The reactions
proceeded at 371C for 1 h and were quenched by addition of 70ml of 1 M HCl.
The resulting mixture was dried in vacuo and then dissolved in 1 ml of DMSO
to be analyzed by HPLC. Marfey’s derivatives of amino acids as a standard were
prepared by reacting 50 mM of amino acids in the same manner as described
above. HPLC analysis was carried out on a Shiseido Capcell-Pak C18 column
(Ø4.6ꢀ 250 mm) with a linear gradient of CH3CN from 10% to 50% in 0.05%
aqueous TFA solution (60 min from 10% to 50%, 5 min at 50%, 3 min from
50% to 10%), at a flow rate of 1.0 mlminꢁ1, with detection at 340 nm. The
glutamine (Gln) residues of 1 and 2 should be converted by acid hydrolysis to
glutamic acid (Glu). Retention times (min) of Marfey’s derivatives used as
standards were as follows: L-Ser (25.6), D-Ser (26.0), L-Thr (27.0), D-Thr
(31.8), L-alloThr (27.5), D-alloThr (29.3), L-Glu (30.1), D-Glu (31.9), L-Pro
(34.3), D-Pro (36.0), L-Ala (33.2), D-Ala (37.2), L-Val (42.1), D-Val (48.1),
L-Tyr (57.9) and D-Tyr (40.4, 62.2).
D-tyrosine after L-glutamine might be critical for antifungal activities
because cordycommunin, which possesses L-Tyr instead of D-Tyr, did
not show activity against Candida albicans and Magnaporthe grisea.14
EXPERIMENTAL PROCEDURE
General experimental procedure
NMR spectra were recorded on a JEOL JMN-ECS400 (JEOL, Tokyo, Japan) at
1
400 MHz for H and 100MHz for 13C. The 1H and 13C chemical shifts were
referenced to the solvent signal (dH 2.49 and dC 39.5 in dimethyl sulfoxide
(DMSO)-d6, dH 3.31 in CD3OD). HRFABMS were recorded on a JEOL JMS-
700 spectrometer. Optical rotation was measured on a P-1020 polarimeter
(Jasco, Tokyo, Japan). The UV spectrum was recorded on a Hitachi U-3200
spectrophotometer (Hitachi, Tokyo, Japan).
Fungal material
The entomopathogenic fungus Lecanicillium sp. HF627 was isolated from a
chillie thrips cadaver. Fungal conidia that had developed on the surface of the
cadaver were transferred onto solid Sabouraud maltose yeast-extract (SMY)
medium (4% maltose, 1% yeast extract, 1% peptone) with 1.5% agar and
incubated at 251C for several days. After several rounds of single-colony
isolation, the isolated strain was identified as Verticillium lecanii (Lecanicillium
sp.) according to its morphology. The fungus is deposited at the culture
collection of Natural Institute of Fruit Tree Science.
(R)- and (S)-MaNP acid ester derivatives of 1 and 2
A modified Mosher’s method using (R)- and (S)-MaNP acid (Tokyo Chemical
Industry Co., Ltd.) was used to clarify the stereogenic centers of the
hydroxytetradecanoic acid moiety.16 To protect the hydroxyl group of the
Tyr residue in advance, methylation was carried out as follows. To 1 and 2
Fermentation and isolation
The seed culture was prepared by inoculating conidia of strain HF627 into dissolved in acetonitrile (10 mg per 500 ml) were added 50ml of 1,8-
50ml of SMY medium in a 500-ml baffled flask, followed by cultivation on a diazabicyclo[5.4.0]undec-7-ene and 50ml of CH3I. After incubation at 501C
rotatory shaker at 28 1C and 160 r.p.m. for 3 days. For the main cultivation, the
for 3 h and quenching by dilution with water, the reaction products were
seed culture (2ml) was inoculated into 100 ml of Medium #5 (8% sucrose, 4% extracted three times with an equal volume of ethyl acetate. The ethyl acetate
yeast extract, 0.5% CaCO3, 1% activated HP20 (Mitsubishi Chemical Co., layer was washed with 1 M HCl and brine, dried over anhydrous sodium
Tokyo, Japan) by methanol) in 500-ml Erlenmeyer flasks, followed by static sulfate, and concentrated in vacuo, yielding crude methyl ethers of 1 and 2.
incubation for 21 days at 251C. The culture broth (1liter) was mixed with n-
To cleave the ester linkage between hydroxytetradecanoic acid and Val
butanol (500ml) and stirred for 1 h, and the n-butanol layer was collected after residue, methanolysis was carried out as follows. Crude verlamelin methyl
centrifugation (3000r.p.m., 10 min), dried over anhydrous sodium sulfate and ethers were dissolved in 2 ml of 0.5 M methanolic sodium metoxide and stirred
concentrated in vacuo using a rotary evaporator, yielding 3 g of brown gum as for 5 h at room temperature. After quenching with 1 M HCl, extraction with
the crude extract. The crude extract was fractionated on a silica gel 60 (70–230 ethyl acetate (equal volume, three times) and evaporation in vacuo, the cleaved
mesh; Merck, Darmstadt, Germany) column (Ø30mm) by stepwise elution product and the uncleaved reactant were collected individually by reverse
with increasing ethyl acetate concentrations (hexane/ethyl acetate¼ 4:1, 2:1,
phase C18 HPLC using 85% methanol as eluent. The recovered reactant was
3:2, 1:1, 1:2, 1:4 and 0:10 v/v), followed by stepwise elution with increasing reused for the same reaction, and the product was obtained as described above.
methanol concentrations (ethyl acetate/methanol¼ 40:1, 20:1, 10:1, 8:1, 4:1, The methyl ethers of 1 and 2 yielded 6.2 and 4.2 mg of methanolysis products,
2:1, 1:1, and 0:10 v/v). Fractions containing verlamelins were detected by silica respectively.
gel TLC (ethyl acetate/methanol¼ 2:1, Rf 0.21), combined and evaporated in
vacuo until dryness. The residues were further fractionated with a Sep-Pak methanolysis product of
Silica 35cc Vac cartridge (10 g; Waters, Milford, MA, USA) by stepwise elution mixed with 2 mg of dimethyl amino pyridine, 3 mg of 1-ethyl-3-(3-dimethy-
laminopropyl) carbodiimide (EDC), 2ml of triethyl amine and 2.1 mg
(R)- and (S)-MaNP acid esters of 1 were prepared as follows. The
1
methyl ether (in 200 ml of CH2Cl2) was
with increasing methanol concentrations (ethyl acetate/methanol ¼ 2:1, 3:2,
1:1, 1:2, 1:4, and 0:10 v/v). Verlamelins in the Sep-Pak fractions were further of (R)-MaNP acid or 2.1 mg of (S)-MaNP acid. After standing at room
separated by preparative reverse phase HPLC with a Shiseido Capcell-Pak C18 temperature overnight and quenching by addition of water, the reaction
column (Ø10ꢀ 250 mm) (Shiseido Co., LTD., Tokyo, Japan) with isocratic
mixture was extracted three times with an equal volume of ethyl acetate.
After washing the ethyl acetate extract with 1 M HCl and brine, drying
elution using 80% methanol at a flow rate of 4 mlminꢁ1. The peaks of 2 and
1, detected at 11 and 12min by UV (210nm), respectively, were collected over anhydrous sodium sulfate and concentrating in vacuo, the (R)- and
individually and evaporated in vacuo to dryness, yielding 2.7 and 65.5mg of (S)-MaNP acid ester derivatives of (3a and 3b, respectively) were
colorless amorphous solid, respectively (chromatogram of HPLC, see purified by reverse phase HPLC on Shiseido Capcell-Pak C18
Supplementary Figure S1).
column (Ø10ꢀ 250 mm) with isocratic elution using 90% methanol as a
Additional quadruplicate experiments without the Sep-Pak Silica fractiona- mobile phase.
1
a
tion were carried out further to obtain 2. As a result, a total of 97.7mg of 2 was
obtained.
(R)- and (S)-MaNP acid ester derivatives of 2 (4a and 4b, respectively) were
synthesized and purified in a similar manner as those of 1.
Compound (1): a colorless solid; [a]23 þ 2.5 (c 0.01, MeOH); UV
Compund 3a: HRFABMS m/z 1144.6558 [Mþ H]þ (calcd for
D
1
(MeOH) lmax (log e) 224 (4.20), 278 (3.29) nm; HRFABMS m/z 886.5289 C61H90N7O14, 1144.6546). For H, see Supplementary Figures S6 and S7.
[Mþ H]þ (calcd for C45H72N7O11, 886.5290). For 1H, 13C, see Table 1 (see
Compund 3b: HRFABMS m/z 1144.6543 [Mþ H]þ (calcd for
1
also Supplementary Figures S2 and S3).
Compound (2): a colorless solid; [a]23 ꢁ68.5 (c 0.01, MeOH); UV
C61H90N7O14, 1144.6546). For H, see Supplementary Figures S6 and S8.
Compund 4a: HRFABMS m/z 1112.6274 [Mþ H]þ (calcd for
D
1
(MeOH) lmax (log e) 224 (4.12), 278 (3.26) nm; HRFABMS m/z 872.5140 C60H86N7O13, 1112.6283). For H, see Supplementary Figures S6 and S9.
[Mþ H]þ (calcd for C44H70N7O11, 872.5134). For 1H, 13C, see Table 1 (see
Compund 4b: HRFABMS m/z 1112.6284 [Mþ H]þ (calcd for
1
also Supplementary Figures S4 and S5).
C60H86N7O13, 1112.6283). For H, see Supplementary Figures S6 and S10.
The Journal of Antibiotics