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Organic & Biomolecular Chemistry
The pH of the reaction was adjusted to ∼7 by addition of product was eluted using 8 : 2 : 0.2 CHCl3–MeOH–H2O.
∼300 μl 1 M HCl. The solvents were removed under reduced Enriched fractions were pooled, the solvent was removed
pressure and the remaining solids were washed 3 times with under reduced pressure, the residue was dissolved minimal
10 mL CHCl3. The combined organic layers were dried with CHCl3, and was applied to a silica preparatory TLC plate which
MgSO4. Filtration and removal of solvent afforded ∼50 mg was developed using 8 : 2 : 0.2 CHCl3–MeOH–H2O to give
(∼99% yield) of the desired compound (BDPA-acid) as a pale 178 mg pure product. To remove ambiguity regarding the
yellow oil. Rf = 0.46 (Al2O3, CHCl3–MeOH–H2O 65 : 30 : 5); 0.27 counterion 150 mg of product was dissolved in 50 mL CHCl3
(SiO2, CHCl3–MeOH–NH4OH 8 : 2 : 0.2). 1H NMR (500 MHz, and washed 2 times with 50 mL saturated NaCl which was
CD3OD) δ 2.05 (quin., 2H, J = 6.72 Hz), 2.47 (t, 2H, J = 7.21 Hz), acidified to pH 4. The organic phase was dried using Na2SO4
3.63 (s, 4H), 3.77 (s, 8H), 4.00 (t, J = 6.36 Hz, 2H), 6.83 (s, 2H), and removal of solvent in vacuo yielded 146 mg (∼65% yield) of
6.99 (s, 1H), 7.21–7.28 (m, 4H), 7.64 (d, J = 7.83 Hz, 4H), 7.76 FmocNH-PEG500-DSPE. Rf = 0.46 (SiO2, CHCl3–MeOH–H2O
1
(td, J = 7.70 Hz, J = 1.71 Hz, 4H), 8.31–8.46 (m, 4H). 13C NMR 8 : 2 : 0.2). H NMR (300 MHz, CDCl3) δ 0.88 (t, 3H), 1.19–1.39
(125 MHz, CD3OD) δ 24.80, 30.56, 58.69, 59.70, 66.94, 114.01, (m, ∼60H), 1.58 (m, 5H), 2.28 (td, J = 7.53, 2.63 Hz, 4H), 2.5 (t,
121.77, 122.61, 123.54, 137.49, 140.16, 148.22, 159.22, 159.37, J = 5.50 Hz, 2H), 3.26–3.50 (m, 5H), 3.50–3.82 (m, ∼56H), 3.88
176.07. HRMS (ESI+) calculated for C36H39N6O3 ([M + H]+) (t, J = 6.22 Hz, 1H), 4.00 (t, J = 5.86 Hz, 4H), 4.08–4.30 (m, 3H),
603.3078; found 603.3067.
4.31–4.50 (m, 4H), 5.17–5.27 (m, 1H), 5.53 (m, 1H), 7.28–7.35
BDPA-PEG2000-DSPE (7). To
a
solution of 17.3 mg (m, 2H), 7.41 (t, J = 7.18 Hz, 2H), 7.61 (d, J = 7.41 Hz, 2H), 7.77
(0.027 mmol) BDPA-acid (6) and 5 mg pentafluorophenol (d, J = 7.41 Hz). 13C NMR (75 MHz, CDCl3) δ 14.36, 15.34,
(0.027 mmol) in 1.7 mL anhydrous CHCl3 under argon at 0 °C 22.92, 25.08, 29.36, 29.59, 29.94, 32.14, 34.26, 34.41, 35.43,
was added drop wise 5.2 mg (0.027 mmol) EDC and 0.66 mg 36.56, 41.13, 42.76, 47.46, 62.41, 66.75, 67.43, 70.05, 70.26,
(0.0054 mmol) DMAP each in 0.1 mL anhydrous CHCl3. The 70.37, 70.75, 120.16, 125.28, 127.25, 127.86, 141.50, 144.19,
reaction was kept at 0 °C for 30 min and then allowed to warm 172.59, 173.20, 173.57, 173.62. HRMS (ESI+) calculated for
to room temperature and stirred for 16 h. 30 mg (0.011 mmol) C83H146N2O23P− ((M + 2H)+) 1569.0054, found 1568.9970.
H2N-PEG2000-DSPE and 3.5 mg (4.7 µl, 0.011 mmol) DIPEA in 146 mg (91.8 µmol) of FmocNH-PEG500-DSPE was dissolved in
0.1 mL anhydrous CHCl3 was added to the reaction and stirred 5 mL 20% piperidine in DMF. The reaction was allowed to
at room temperature under argon for 24 h. The crude reaction proceed for 2 h at room temperature, after which the solvent
mixture was subjected to preparatory scale TLC on silica using was removed in vacuo and the residue was subjected to flash
8 : 2 : 0.2 CHCl3–MeOH–NH4OH as the eluent followed by a column chromatography (SiO2, CHCl3–MeOH–water 8 : 2 : 0.2)
second P-TLC run on SiO2 using 8 : 1 : 0.1 CHCl3–MeOH– 4 times to yield enriched product. This material was purified
NH4OH as the eluent to give 24 mg (∼65% yield) of product as after two runs on preparatory TLC (SiO2, CHCl3–MeOH–H2O
a yellow/orange solid film. Rf = 0.25 (SiO2, 8 : 1 : 0.1 CHCl3– 8 : 2 : 0.2). 90 mg (∼73% yield) of product was obtained as a
1
MeOH–NH4OH). H NMR (300 MHz, CDCl3, CD3OD) δ 0.84 (t, white solid. Rf = 0.26 (SiO2, CHCl3–MeOH–H2O 8 : 2 : 0.2). 1H
J = 6 Hz, 6H), 1.21 (m, ∼65H), 1.54 (m, 4H), 2.07 (m, 2H), 2.24 NMR (300 MHz, CDCl3) δ 0.88 (t, 6H), 1.26 (m, ∼58H), 1.59 (m,
(td, J1 = 7.53 Hz, J2 = 2.39 Hz, 4H), 2.36 (m, 2H), 3.38 (m, 4H), 4H), 2.29 (td, J = 7.59, 3.95 Hz, 5H), 2.50 (t, J = 6.10 Hz, 2H),
3.44–3.76 (m, ∼216H), 3.85 (m, 10H), 3.95 (m, 6H), 4.07–4.22 3.19 (m, 2H), 3.38–3.52 (m, 3H), 3.53–3.86 (m, ∼51H),
(m, 4H), 4.34 (dd, J1 = 12.08 Hz, J2 = 3.23 Hz, 1H), 5.17 (m, 3.94–4.09 (m, 2H), 4.17 (dd, J = 12.08, 6.58 Hz, 1H), 4.40 (dd,
1H), 6.85 (s, 2H), 7.03 (s, 1H), 7.13–7.20 (m, 4H), 7.54–7.71 (m, J = 11.96, 3.35, 1H), 5.22 (m, 1H). 13C NMR (75 MHz, CDCl3)
8H), 8.45 (d, J = 4.54 Hz, 4H). 13C NMR (125 MHz, CDCl3, δ 13.69, 22.51, 24.74, 24.77, 29.00, 29.18, 29.22, 29.51, 29.55,
CD3OD) δ 14.25, 22.84, 25.04, 25.07, 25.50, 29.32, 29.51, 29.81, 31.79, 33.91, 34.04, 36.29, 39.42, 62.18, 64.18, 64.88, 66.64,
29.86, 32.08, 32.87, 34.27, 34.44, 39.32, 42.41, 58.72, 59.69, 66.99, 69.52, 69.66, 69.73, 69.83, 69.90, 69.97, 70.09,
62.81, 63.57, 63.68, 64.42, 67.27, 69.89, 70.02, 70.23, 70.38, 70.17, 70.23, 173.35, 173.75. HRMS (ESI+) calculated for
70.63, 70.69, 114.18, 121.89, 122.55, 123.34, 137.23, 139.96, C68H134N2O21P− ((M + 2H)+) 1347.9368, found 1347.9354; MS
148.77, 158.83, 159.39, 173.32, 173.72. HRMS (ESI+) calculated (ESI+) calculated for C68H134N2O21P− ((M
+
H
+
Na)+)
for
C
168H298N8O56P− ([(M
+
3H)/2]+) 1679.0339, found 1369.9187, found 1369.9177.
1679.5384.
BDPA-PEG500-DSPE (10). To
a
solution of 88.9 mg
NH2-PEG500-DSPE (9). To a solution of 146 mg (0.174 mmol) (0.139 mmol) BDPA-acid (6) and 25.6 mg pentafluorophenol
8 in 5 mL anhydrous CHCl3 at 0 °C under argon was sequen- (0.139 mmol) in 3 mL anhydrous CHCl3 under argon at 0 °C
tially added 48 mg (0.261 mmol) pentafluorophenol, 50 mg was added drop wise 26.6 mg (0.139 mmol) EDC and 3.33 mg
(0.261 mmol) EDC, and 4.3 mg (34.8 µmol) DMAP. The reac- (0.0273 mmol) DMAP each in 0.5 mL anhydrous CHCl3. The
tion was kept at 0 °C for 30 min, then allowed to warm to reaction was kept at 0 °C for 30 min and then allowed to
room temperature and stirred for 16 h. To this reaction warm to room temperature and stirred for 16 h. 80 mg
mixture was added 169 mg (0.226 mmol) DSPE followed by (0.0594 mmol) H2N-PEG500-DSPE and 19.2 mg (25.9 µl,
33.7 mg (45.5 µl, 0.261 mmol) DIPEA in 1 mL anhydrous 0.149 mmol) DIPEA in 0.5 mL anhydrous CHCl3 was added to
CHCl3. The reaction was refluxed for 24 h after which the the reaction and stirred at room temperature under argon for
solvent was removed in vacuo. The residue was dissolved in 24 h. The crude reaction mixture was subjected to preparatory
minimal CHCl3 and applied to a silica flash column and the scale TLC on silica using 8 : 2 : 0.2 CHCl3–MeOH–NH4OH as
5652 | Org. Biomol. Chem., 2014, 12, 5645–5655
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