Research Article
MedChemComm
reflects the fold increase of CSCs that survived the compound
treatment independently of the shrinkage of the tumour itself.
The compounds with AF values below 1 can be regarded as
molecules which reduce the cancer stem cell population,
whereas AF values above 1 signify molecules that enrich the
cancer stem cell population. Thus, the usage of AF values de-
fines the success or failure of the compounds in affecting
cancer cells toward cancer stem cell population.
NCI-60 sulforhodamine B (SRB) cytotoxicity assay
Huh7 and Hep3B (2000 cells per well), SNU-475 (1000 cells
per well) and Mahlavu (1000 cells per well) cells were inocu-
lated into 96-well plates (150 μl per well). After 24 hours, mol-
ecules of interest and DMSO control were applied in concen-
trations of 40 μM to 2.5 μM in serial dilutions. After 72 h of
treatment, cells were fixed with cold 10% (w/v) trichloroacetic
acid (MERCK) for an hour. Then, the wells were washed with
ddH2O and dried. 50 μl of 0.4% SRB dye (Sigma-Aldrich) was
applied to each well and incubated at room temperature for
10 min. Each well was washed with 1% acetic acid and left
for air-drying. SRB dye was solubilised using 100 μl per well
10 mM Tris-Base solution, and the absorbance was measured
at 515 nm. The experiment was performed in triplicate, and
the absorbance values were normalized to DMSO controls.
Cancer stem cell-like subpopulations carry behaviors such
as higher tumor-forming and metastasis capacities along
with resistance to antitumor drugs which allows tumors to
survive and relapse.8 The analysis of the action of the chemo-
therapeutics that deplete the CSC-like population by the fol-
lowing surface markers may enumerate the qualities of the
compounds and may allow one to assess their differential ac-
tion. Our results represent parallel findings with sorafenib
(6) and other compounds and allow comparative analysis of
the compounds toward cancer stem cell marker positive cell
populations. The AF concept introduced in this study clearly
demonstrates the differential action of the compounds.
It is known that patients used to develop resistance to-
wards sorafenib (6). This is consistent with our data with
sorafenib (6) having an AF value that is 2 fold higher com-
pared to that of the DMSO control while maintaining good
cytotoxicity through the low IC50 values (Table 2A). However,
the known CSC inhibitor (DAPT) has low AF values and its
IC50 is much higher than that for sorafenib (6). Furthermore,
while quinoide 5 does not possess cytotoxic actions (for each
HCC line) and 3 has high IC50 values against Huh7, Hep3B
or MV (Mahlavu) cells, they both significantly reduce the CSC
marker positive subpopulations in mesenchymal Mahlavu
and SNU-475 cells (Tables 2A and B).
Flow cytometry
HCC cells are inoculated into 100 mm2 culture dishes (100
000–200 000 cells). 24 hours later, cells were treated with the
compounds (IC100 conc.) for 72 hours. Dead cells that no lon-
ger remained attached to the surface of the culture plates
were discarded through vacuum aspiration and cells that
remained attached were collected to be fixed with 4% para-
formaldehyde for 30 minutes. Huh7 and Hep3B cells were
stained for cancer stem cell markers using anti-CD133/1
(AC133)–biotin (Miltenyi, 130-090-664), anti-biotin–PE
(Miltenyi, 130-090-756), and anti-EpCAM–FITC (Miltenyi, 130-
080-301), whereas Mahlavu and SNU-475 cells were stained
using anti-CD90–FITC (Miltenyi, 130-095-403). For isotype
controls, mouse IgG1 isotype control–FITC conjugate
(Miltenyi, 130-092-213) and mouse IgG1 isotype control anti-
body–biotin conjugate (Miltenyi, 130-093-018) were used.
Staining of cells was performed according to the manufac-
turer's protocol. Cells were analyzed using the BD Accuri C6
Flow Cytometer and Software (BD Biosciences). The same
staining procedure was applied for the analysis of HCC cells
in order to determine the CSC marker positivity.
The normalized aggressiveness factor allows selection of
promising experimental compounds possessing lower proba-
bility to form aggressive tumours in comparison to a particu-
lar drug with known clinical behaviour. The methodology can
serve as a simple and valuable tool for pre-clinical screening.
Experimental section
Syntheses of compounds 1–10
Acknowledgements
Liver cancer stem cell studies and DCK supported by
TUBITAK grant #113S540. COST Actions: CM1106, CA15135,
VEGA 1/0634/13, APV SK-FR-2015-0014 and Biomagi, Ltd. are
acknowledged for chemistry. Sorafenib tosylate (6) was
obtained as a gift from Bayer, Inc.
The syntheses and physicochemical properties of prepared
organic compounds 1–10 can be found in the ESI.‡
Cell culture
Huh7 and Mahlavu, human hepatocellular carcinoma (HCC)
cell lines, were maintained in Dulbecco's modified Eagle's
medium (DMEM) (Invitrogen/GIBCO), supplemented with
10% fetal bovine serum (FBS) (Invitrogen/GIBCO) and 0.1
mM nonessential amino acid, whereas SNU-475 cells were
maintained in RPMI (Invitrogen/GIBCO), supplemented 10%
fetal bovine serum (FBS) and 2 mM L-glutamine. Both media
contained 100 units per mL penicillin and 100 units per mL
streptomycin. Cells were grown at 37 °C in a humidified incu-
bator under 5% CO2.
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This journal is © The Royal Society of Chemistry 2016