Journal of Medicinal Chemistry
Article
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Intermediate 16. Five hundred milligrams of 15 was dissolved in 4
mL of TFA and 5 mL of DCM. After stirring at room temperature for
2 h, the solution was concentrated and dried under vacuum to get the
title compound in a quantitative yield. ES−MS: observed [MH]+,
412.2.
Intermediate 17. A mixture of 16 (180 mg, 0.42 mmol),
benzotriazol-1-yloxytris(dimethylamino)phosphonium hexafluoro-
phosphate (BOP) (0.22 g, 0.506 mmol), and DIEA (290 mg, 1.68
mmol) was dissolved in 4 mL of anhydrous DMF. The mixture was
stirred at room temperature for 20 min, followed by addition of Bn-
ONH2 (62 mg, 0.506 mmol). The mixture was further stirred at room
temperature overnight and concentrated. The residue was triturated
with 1 N HCl, and the solid obtained was filtered and washed with 1
N Na2CO3, water, and brine. The product was further purified by
flash column chromatography to give 180 g (80%) of the title
compound. ES−MS: observed [MH]+, 517.2.
Intermediate 18 (AGA). A mixture of 17 (100 mg, 0.193 mmol)
and Pd/C (0.01 g, 10%, wet) in 10 mL of methanol was stirred under
hydrogen gas at room temperature for 2 h. The mixture was filtered,
followed by washing of Pd/C with methanol (5 mL × 4). The
combined methanol filtrate was concentrated, and the product was
further purified by flash column chromatography to give 40 mg (62%)
of the title compound. ES−MS: observed [M − H]−, 335.1. The
representative NMR and HRMS spectra are shown in the Supporting
5H), 4.75−4.62 (m, 1H), 3.21 (dd, 1H), 3.10−2.94 (m, 1H), 2.94−
2.74 (m, 1H), 2.05 (qd, 2H), 1.53 (ddt, 2H), 1.11 (ddt, 1H), 0.88
Intermediate 19. To a stirred solution of Fmoc-Glu(O-Bn)-OH
(2.0 g, 4.35 mmol), HOBT (0.7 g, 5.22 mmol), and N-Boc-
ethylenediamine (0.77 g, 4.79 mmol) in 20 mL of anhydrous DMF
cooled in an ice bath was added EDCI (1 g, 5.224 mmol), and the
mixture was stirred at room temperature for 2.5 h. Ice-cold water was
added to the resulting mixture, the mixture was stirred, and the solid
obtained was filtered. The resulting residue was purified by
chromatography (silica gel, 60% ethyl acetate/hexane) to obtain 1.8
g (72%) of the title compound. ES−MS: observed [MH]+, 602.2. 1H
NMR (400 MHz, chloroform-d) δ 7.81−7.60 (m, 2H), 7.51 (d, 2H),
7.38−7.18 (m, 9H), 5.11−4.97 (m, 2H), 4.33 (q, 2H), 4.13 (t, 2H),
3.43−3.04 (m, 4H), 2.57−2.26 (m, 2H), 2.20−1.99 (m, 1H), 2.00−
MS: observed [MH]+, 515.2. H NMR (400 MHz, methanol-d4) δ
8.55 (dd, 2H), 8.27−8.12 (m, 1H), 8.02 (dd, 1H), 7.44−7.27 (m,
2H), 6.71 (dd, 2H), 4.17 (dd, 2H), 3.72−3.37 (m, 9H), 2.59−2.20
(m, 7H), 2.18−2.00 (m, 3H), 1.50 (s, 9H) (Figure S13).
Intermediate 23. A mixture of 18 (20 mg, 0.06 mmol), 22 (37 mg,
0.07 mmol), and HOBT (10 mg, 0.07 mmol) was dissolved in 2 mL
of DMF and cooled down to 0−5 °C in an ice bath, followed by
addition of EDCI (14 mg, 0.07 mmol). The mixture was stirred at
room temperature overnight and concentrated. The residue was
dissolved in 10 mL of CH2Cl2 and washed with 1 N HCl, H2O, and
brine. The DCM solution was dried over MgSO4, filtered, and
concentrated. The product was purified by flash column chromatog-
raphy (2% methanol/DCM) to give the title compound (21 mg,
45%). ES−MS: observed [MH]+, 799.9.
Intermediate 24 (AGA-1). Twenty milligrams of 23 was dissolved
in 2 mL of TFA and 1 mL of DCM. After stirring at room
temperature for 2 h, the solution was concentrated and dried under
vacuum to get crude t-butyl-deprotected acid product. To the acid,
Pd/C (4 mg, 20%, wet) in 1 mL of methanol was stirred under
hydrogen gas at room temperature for 2 h. The mixture was filtered,
followed by washing of Pd/C with methanol (1 mL × 4). The
combined methanol filtrate was concentrated, and the product was
further purified by flash column chromatography followed by
preparative HPLC purification to give 2 mg (14%) of the title
compound. ES−MS: observed [MH]+, 643.3. H NMR (400 MHz,
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chloroform-d) δ 7.38−7.19 (m, 6H), 6.80 (d, 2H), 6.69−6.47 (m,
2H), 5.20−4.88 (m, 2H), 4.74 (d, 3H), 2.99 (dd, 2H), 2.84 (dd, 2H),
2.65 (tt, 2H), 2.11 (ddd, 2H), 1.41 (q, 2H), 1.30−1.12 (m, 2H), 1.02
Intermediate 27. A mixture of 26 (2 g, 4.7 mmol), (2-(1H-
benzotriazol-1-yl)-1,1,3,3-tetramethyluronium hexafluorophosphate
(HBTU) (2.14 g, 5.6 mmol), and DIEA (1.6 mL, 9.4 mmol) was
dissolved in 20 mL of anhydrous DMF. The mixture was stirred at
room temperature for 20 min, followed by addition of Bn-ONH2 (988
mg, 6.2 mmol). The mixture was further stirred at room temperature
for 18 h. Two hundred fifty milliliters of cold H2O was added, the
mixture was stirred, and the solid formed was filtered. The solid was
vacuum-dried and used for the next step. Yield, 1.65 g (66%); ES−
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MS: observed [MH]+, 533.6. H NMR (400 MHz, methanol-d4) δ
7.47−7.25 (m, 9H), 7.08−6.94 (m, 2H), 6.77−6.59 (m, 2H), 5.10 (d,
2H), 4.90−4.74 (m, 7H), 4.65 (dd, 1H), 3.12−2.75 (m, 3H), 2.23−
1.90 (m, 2H), 1.56−1.36 (m, 2H), 1.09−1.00 (m, 1H), 0.83 (dd, 6H)
Intermediate 20. One gram of 19 obtained above was dissolved in
10 mL of DCM and 3 mL of piperidine. The mixture was stirred at
room temperature for 30 min and concentrated under vacuum. The
product was purified by flash column chromatography (2% methanol/
DCM) to give the title compound (0.6 g, 72%). ES−MS: observed
Intermediate 28. To a stirred solution of 2-(Boc-amino)ethyl
bromide (0.31 g, 1.4 mmol) and Cs2CO3 (0.92 g, 2.82 mmol) in 10
mL of anhydrous acetonitrile at 60 °C was added dropwise a solution
of 27 (0.5 g, 0.94 mmol) in 5 mL of acetonitrile over a period of 1 h.
The resulting mixture was stirred at 60 °C for another 3 h and
concentrated under vacuum. The product was redissolved with ethyl
acetate and filtered, followed by washing of the solid with ethyl
acetate for five times (10 mL × 5). The combined ethyl acetate filtrate
was washed with 1 N HCl solution, water, and brine. The ethyl
acetate solution was dried over anhydrous MgSO4, filtered, and
concentrated. The resulting residue was purified by silica gel
chromatography using (silica gel, 40% ethyl acetate/hexane) to give
the product (0.4 g, 58%). ES−MS: observed [MH]+, 676.3. 1H NMR
(400 MHz, DMSO-d6) δ 7.47−7.18 (m, 10H), 7.15−7.08 (m, 1H),
7.03−6.93 (m, 1H), 6.87−6.71 (m, 1H), 6.67−6.62 (m, 1H), 5.18−
4.96 (m, 2H), 4.90−4.67 (m, 2H), 4.51−4.37 (m, 1H), 3.87 (td, 1H),
3.11 (d, 1H), 3.01−2.82 (m, 2H), 2.78 (d, 1H), 1.38 (s, 9H), 1.14−
Intermediate 29. Four hundred milligrams of 28 was dissolved in 4
mL of TFA and 6 mL of DCM. After stirring at room temperature for
2 h, the solution was concentrated and dried under vacuum to get
crude Boc-deprotected free amine product in quantitative amounts,
which was used directly for the next step. ES−MS: observed [MH]+,
576.3.
Intermediate 30. To a stirred solution of 29 (100 mg, 0.174
mmol) in 5 mL of anhydrous DMF were added 1-hydroxy-7-
azabenzotriazole (HOAt) (47 mg, 0.35 mmol), hexafluorophosphate
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[MH]+, 502.2. H NMR (400 MHz, methanol-d4) δ 7.91−7.53 (m,
5H), 7.49−7.20 (m, 8H), 5.14 (s, 2H), 4.53−4.40 (m, 1H), 4.37 (dd,
1H), 4.24 (dt, 1H), 4.09 (dd, 1H), 3.59−3.37 (m, 3H), 3.17−2.94
(m, 2H), 2.44 (dt, 2H), 2.22−2.04 (m, 1H), 2.05−1.86 (m, 1H)
Intermediate 21. To a stirred solution of 20 (100 mg, 0.2 mmol)
in 1 mL of anhydrous DMF were added EDCI (40 mg, 0.24 mmol),
HOBT (32 mg, 0.24 mmol), and 6-Boc-hydrazinonicotinic acid (50
mg, 0.2 mmol), and the mixture was stirred at room temperature
overnight. To the resulting mixture, ice-cold water (100 mL) was
added and the mixture was stirred for 30 min. The resulting solid was
filtered, dried, and purified by chromatography (silica gel, 1%
methanol/DCM) to obtain 80 mg (55%) of the title compound.
ES−MS: observed [MH]+, 737.2. 1H NMR (400 MHz, DMSO-d6) δ
8.99−8.80 (m, 1H), 8.52−8.35 (m, 2H), 8.24 (s, 1H), 8.00−7.84 (m,
2H), 7.79 (d, 2H), 7.63 (t, 2H), 7.49−7.38 (m, 1H), 7.37−7.15 (m,
9H), 6.52 (dd, 1H), 4.99 (s, 2H), 4.31−4.06 (m, 3H), 3.90 (td, 1H),
2.47 (d, 7H), 2.29 (t, 2H), 1.87 (ddd, 1H), 1.79−1.64 (m, 1H), 1.33
Intermediate 22. Eighty milligrams of 21 obtained above was
dissolved in 10 mL of DCM and 3 mL of piperidine. The mixture was
stirred at room temperature for 30 min and concentrated under
vacuum. The product was purified by flash column chromatography
(2% methanol/DCM) to give the title compound (35 mg, 65%). ES−
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J. Med. Chem. XXXX, XXX, XXX−XXX