Pyridinopolyamine Libraries
J . Org. Chem., Vol. 62, No. 15, 1997 5163
24 h and then treated with H2O (200 mL). The mixture was
extracted with CH2Cl2 (2 × 200 mL). The combined organic
phase was washed with brine, dried (Na2SO4), and concen-
trated. The residue was purified by flash chromatography on
a silica gel column. Elution with 9:1 and then 1:4 EtOAc-
MeOH afforded 6.13 g (77%) of diprotected product 8 as a pale
yellow thick oil: silica gel TLC Rf 0.45 (100:1 MeOH-30%
in anhydrous CH3CN was stirred at rt for 23 h. The solvent
was evaporated under reduced pressure, and the residue was
dissolved in H2O-CHCl3. The layers were separated, and the
aqueous layer was extracted with CHCl3. The combined
organic phase was dried (Na2SO4), and the solvent was
evaporated. The residue was purified by preparative thin
layer chromatography (PLC) affording the desired library.
Libr a r y 38: colorless oil, yield 160 mg (53%), silica gel TLC
Rf 0.36-0.54 (20:1 EtOAc-MeOH); 1H NMR (CDCl3) δ 1.55-
1.70 (m, 2H), 2.25 (s, 2.25H), 2.30 (s, 2.25H), 2.34 (s, 3H), 2.47-
2.68 (m, 6H), 3.38-3.74 (m, 14H), 3.89 (s, 2.25H), 3.92 (s,
2.25H), 6.91-7.25 (m, 10H), 7.28-7.68 (m, 6H), 7.84-8.10 (m,
3H); MS (ESI) m/ z 655, 699, 743, 787 (M + 1)+; 677, 721, 765,
809 (M + Na)+.
1
NH4OH); H NMR (DMSO-d6, D2O, 400 MHz) δ 1.31 (s, 9H),
1.41-1.55 (m, 2H), 2.93-3.05 (m, 2H), 3.23-3.30 (m, 2H),
3.31-3.33 (m, 2H), 3.39-3.43 (m, 2H), 3.62 (s, 2H), 4.63 (s,
2H), 7.09-7.11 (d, 1H, J ) 7.6 Hz), 7.28-7.30 (d, 1H, J ) 7.6
Hz), 7.65-7.69 (t, 1H, J ) 7.6 Hz), 7.74-7.76 (m, 1H), 7.84-
7.86 (m, 1H), 7.92-7.95 (m, 1H), 7.95-8.02 (m, 1H); 13C NMR
(DMSO-d6) δ 27.9, 31.0, 44.1, 45.1, 46.3, 47.1, 52.4, 58.3, 78.8,
119.8, 119.9, 124.2, 130.0, 132.3, 134.3, 137.3, 147.5, 154.3,
Libr a r y 39: pale yellow oil, yield 0.25 g (88%), silica gel
+
Cs)+
1
154.5, 162.6; HRMS (FAB) m/ z 656.116 (M
TLC Rf 0.40-0.58 (20:1 EtOAc-MeOH); H NMR (CDCl3) δ
(C23H33N5O7SCs requires 656.115). Anal. Calcd for
C23H33N5O7S: C, 52.76; H, 6.35. Found: C, 52.41; H, 6.16.
3-[[2-[[[6-(Am in om et h yl)-2-p yr id in yl]m et h yl]a m in o]-
eth yl](ter t-bu toxyca r bon yl)a m in o]-1-p r op a n ol (1). Thio-
phenol (185 µL, 199 mg, 1.8 mmol) was added to a stirred
mixture of 8 (0.53 g, 1.0 mmol) and anhydrous K2CO3 (1.0 g,
7.2 mmol) in anhydrous DMF (20 mL). The resulting reaction
mixture was stirred at rt for 3 h and concentrated under
vacuum to remove the solvent. The residue was dissolved in
a mixture of H2O and CHCl3, and the pH was adjusted to 13-
14. The organic phase was separated, and the aqueous phase
was extracted with CHCl3. The combined organic phase was
washed with brine, dried (Na2SO4), and concentrated under
reduced pressure. The residue was purified by flash chroma-
tography on a silica gel column. Elution with 100% MeOH
and then 50:1 MeOH-30% NH4OH afforded 250 mg (74%) of
the title compound 1 as a pale yellow oil. The compound 1
obtained by this procedure (Scheme 3) shows identical chro-
matographic and spectroscopic properties to those of the same
compound synthesized by another route (Scheme 1).
P r ep a r a tion of Libr a r y 36. A solution of R-bromo-m-
xylene (0.494 g, 2.66 mmol, 2 equiv) and methyl 3-(bromom-
ethyl)benzoate (0.61 g, 2.66 mmol, 2 equiv) in 25 mL of
anhydrous CH3CN was added dropwise at rt to a stirred
mixture of 1 (0.45 g, 1.33 mmol) and anhydrous K2CO3 (2.67
g, 19.3 mmol) in 40 mL of anhydrous CH3CN. The resulting
reaction mixture was stirred at rt overnight. After the solvent
was evaporated, the residue was dissolved in H2O and CHCl3.
The layers were separated, and the aqueous layer was
extracted with CHCl3. The combined organic phase was
washed with brine and dried (Na2SO4). The solvent was
evaporated, and the residue was purified by flash chromatog-
raphy on a silica gel column. Elution with 10:1 hexanes-
EtOAc and then 100% EtOAc afforded 0.88 g (93%) of the
intermediate library 36 as a pale yellow oil: silica gel TLC Rf
0.31, 0.42, 0.54 and 0.62 (1:2 hexanes-EtOAc); 1H NMR
(CDCl3) δ 1.26 (s, 9H), 1.40-1.60 (m, 2H), 2.32 (s, 2.25H), 2.34
(s, 2.25H), 2.57-2.68 (m, 2H), 3.15-3.35 (m, 4H), 3.40-3.52
(m, 2H), 3.55-3.78 (m, 10H), 3.91 (s, 2.25H), 3.92 (s, 2.25H),
6.98-7.08 (m, 2H), 7.10-7.24 (m, 4H), 7.30-7.72 (m, 6H), 7.85-
8.10 (m, 3H); MS (ESI) m/ z 651, 695, 739, 783 (M + H)+; 673,
717, 761, 805 (M + Na)+.
1.55-1.70 (m, 2H), 2.29 (s, 2.25H), 2.33 (s, 2.25H), 2.47-2.68
(m, 6H), 3.44-3.72 (m, 14H), 3.88 (s, 3H), 3.89 (s, 2.25H), 3.91
(s, 2.25H), 6.97-7.22 (m, 7H), 7.28-7.68 (m, 7H), 7.78-8.08
(m, 5H); MS (ESI) m/ z 699, 743, 787, 831 (M + 1)+; 721, 765,
809, 853 (M + Na)+.
Libr a r y 9. This library was prepared as above for 36 from
1 (560 mg, 1.65 mmol), anhydrous K2CO3 (3.5 g, 25.0 mmol),
and a solution of benzyl bromide (123 µL, 171 mg, 1.0 mmol),
3-fluorobenzyl bromide (124 µL, 189 mg, 1.0 mmol), R-bromo-
m-xylene (141 µL, 185 mg, 1.0 mmol), methyl 3-(bromometh-
yl)benzoate (229 mg, 1.0 mmol), 3-nitrobenzyl bromide (216
mg, 1.0 mmol) and R′-bromo-R,R,R-trifluoro-m-xylene (155 µL,
239 mg, 1.0 mmol) in 90 mL of anhydrous CH3CN. Library 9
was obtained as a pale yellow oil: yield 0.89 g (76%); silica
gel TLC Rf 0.30-0.70 (1:2 hexanes-EtOAc); 1H NMR (CDCl3)
δ 1.27 (s, 9H), 1.40-1.70 (m, 2H), 2.32 (s, 0.75H), 2.34 (s,
0.75H), 2.47-2.72 (m, 2H), 3.15-3.35 (m, 4H), 3.38-3.52 (m,
2H), 3.54-3.80 (m, 12H), 3.91 (s, 0.75H), 3.92 (s, 0.75H), 6.90-
8.32 (m, 15.2H); MS (ESI) m/ z 609-813 (M + 1)+.
Libr a r y 10. This library was prepared as above for 9 from
six benzylic bromides (0.2 mmol each), 2 (130 mg, 0.33 mmol),
and anhydrous K2CO3 (0.80 g, 5.7 mmol) in 20 mL of
anhydrous CH3CN. Library 10 was obtained as a pale yellow
oil: yield 180 mg (71%); silica gel TLC Rf 0.30-0.70 (1:4
1
hexanes-EtOAc); H NMR (CDCl3) δ 1.27 (s, 9H), 1.41-1.62
(m, 2H), 2.32 (s, 0.75H), 2.34 (s, 0.75H), 2.38 (s, 3H), 2.58-
2.80 (m, 2H), 3.04-3.28 (m, 4H), 3.50-3.85 (m, 12H), 3.91 (s,
0.75H), 3.92 (s, 0.75H), 6.85-8.30 (m, 19.2H); MS (ESI) m/ z
663-867 (M + 1)+
.
Libr a r y 11. This library was synthesized as above for
library 37 from 0.77 g (1.08 mmol) of library 9 and 8 mL of
TFA. Library 11 was obtained as a pale yellow oil: yield 0.63
g (95%); silica gel TLC Rf 0.36-0.50 (100:1 MeOH-30%
NH4OH); 1H NMR (CDCl3) δ 1.49-1.68 (m, 2H), 2.32 (s,
0.75H), 2.34 (s, 0.75H), 2.53-2.76 (m, 6H), 3.50-3.80 (m, 14H),
3.90 (s, 0.75H), 3.92 (s, 0.75H), 6.85-8.30 (m, 15.2H); MS (ESI)
m/ z 509-713 (M + 1)+.
Libr a r y 12: colorless oil, yield 71 mg (70%), silica gel TLC
Rf 0.30-0.45 (20:1 EtOAc-MeOH); 1H NMR (CDCl3) δ 1.60-
1.76 (m, 2H), 2.31 (s, 0.75H), 2.33 (s, 0.75H), 2.48-2.73 (m,
6H), 3.42-3.80 (m, 14H), 3.89 (s, 0.75H), 3.91 (s, 0.75H), 6.85-
8.30 (m, 20.2H); MS (ESI) m/ z 656-860 (M + 1)+.
P r ep a r a tion of Libr a r y 37. CF3COOH (8 mL) was added
to a flask containing library 36 (0.75 g, 1.04 mmol) at 0 °C.
The resulting solution was stirred at rt for 3 h. TFA was
evaporated under reduced pressure, and the residue was
dissolved in 200 mL of chloroform. The solution was washed
Libr a r y 13: pale yellow oil, yield 55 mg (78%), silica gel
1
TLC Rf 0.25-0.50 (20:1 EtOAc-MeOH); H NMR (CDCl3) δ
1.55-1.72 (m, 2H), 2.25 (s, 3H), 2.30 (s, 0.75H), 2.34 (s, 0.75H),
2.49-2.70 (m, 6H), 3.45 (s, 2H), 3.49-3.78 (m, 14H), 3.89 (s,
0.75H), 3.92(s, 0.75H), 6.85-8.30 (m, 19.2H); MS (ESI) m/ z
613-817 (M + 1)+.
three times with
a saturated K2CO3 solution and dried
(Na2SO4). The solvent was evaporated, and the residue was
purified by flash chromatography on a silica gel column.
Elution with 100% methanol and then 100:1 MeOH-30%
NH4OH afforded 0.50 g (78%) of library 37 as a pale yellow
oil: silica gel TLC Rf 0.43 (100:1 MeOH-30% NH4OH); 1H
NMR (CDCl3) δ 1.52-1.67 (m, 2H), 2.32 (s, 2.25H), 2.34 (s,
2.25H), 2.56-2.68 (m, 6H), 3.54-3.78 (m, 12H), 3.90 (s, 2.25H),
3.92 (s, 2.25H), 6.98-7.23 (m, 6H), 7.27-7.70 (m, 6H), 7.86-
8.09 (m, 3H); MS (ESI) m/ z 551, 595, 639, 683 (M + 1)+.
Gen er a l P r oced u r e for th e P r ep a r a tion of Libr a r ies
38, 39, a n d 12-21. A mixture of selected benzylic bromide
(1.4 equiv), library 37 or 11 (1.0 equiv), and K2CO3 (15 equiv)
Libr a r y 14: colorless oil, yield 45 mg (45%), silica gel TLC
Rf 0.43-0.60 (40:1 EtOAc-MeOH); 1H NMR (CDCl3) δ 1.55-
1.75 (m, 2H), 2.32 (s, 0.75H), 2.34 (s, 0.75H), 2.47-2.75 (m,
6H), 3.40-3.80 (m, 14H), 3.90 (s, 0.75H), 3.92 (s, 0.75H), 6.80-
8.30 (m, 19.2H); MS (ESI) m/ z 616-820 (M + 1)+.
Libr a r y 15: pale yellow oil, yield 45 mg (41%), silica gel
1
TLC Rf 0.47-0.68 (50:1 EtOAc-MeOH); H NMR (CDCl3) δ
1.55-1.74 (m, 2H), 2.31 (s, 0.75H), 2.33 (s, 0.75H), 2.48-2.72
(m, 6H), 3.45-3.80 (m, 14H), 3.90 (s, 0.75H), 3.92 (s, 0.75H),
6.80-8.30 (m, 19.2H); MS (ESI) m/ z 643-847 (M + 1)+.
Libr a r y 16: colorless oil, yield 60 mg (49%), silica gel TLC
Rf 0.37-0.57 (40:1 EtOAc-MeOH); 1H NMR (CDCl3) δ 1.57-