Alternative Synthesis of 4′-Thioarabinonucleosides
J ournal of Medicinal Chemistry, 1997, Vol. 40, No. 14 2181
4.83-4.48 (6H, m), 4.26 (0.37H, dd, J ) 2.9, 4.9 Hz), 4.18
(0.63H, dd, J ) 3.9, 8.8 Hz), 4.12 (0.63H, dd, J ) 6.8, 8.8 Hz),
4.03 (dd, 0.37H, J ) 4.9, 6.4 Hz), 3.76 (0.37H, m), 3.73-3.44
(2H, m), 3.40 (0.63H, m), 2.04 (3H, s); FAB MS m/ z 435 (M+
- COCH3). Anal. (C28H30O4S‚0.75H2O) C, H.
HPLC (YMC-PACK D-ODS-5 20 × 250mm, YMC Co., Ltd.,
J apan; 7% CH3CN in H2O, flow rate 8 mL/min; retention time
R, 42 min, â, 46 min) to give R-6c (92 mg, 23%) and â-6c (87
mg, 22%). â-Anomer (â-6c): mp 189-190 °C (crystallized from
H2O); UV λmax (H2O) 292 nm (ꢀ 8300), 217 (ꢀ 11 400); 1H NMR
(DMSO-d6) δ 11.67 (1H, s, D2O exchangeable), 8.55 (1H, s),
6.34 (1H, d, J ) 5.9 Hz), 5.79 (1H, d, J ) 5.4 Hz, D2O
exchangeable), 4.97 (1H, d, J ) 4.4 Hz, D2O exchangeable),
4.32 (1H, t, J ) 4.9 Hz, D2O exchangeable), 3.99 (1H, dt, J )
5.8, 5.9 Hz), 3.95-3.93 (1H, m), 3.71 (1H, dd, J ) 5.4, 11.2
Hz), 3.66 (1H, dd, J ) 5.4, 11.2 Hz), 3.18-3.16 (1H, m); EI
MS m/ z 386 (M+). Anal. (C9H11IN2O5S) C, H, N. R-Anomer
(R-6c): mp 196-198 °C (crystallized from H2O); UV λmax (H2O)
5-Eth yl-1-(4-th io-D-a r a bin ofu r a n osyl)u r a cil (6a ). A so-
lution of 5-ethyluracil (841 mg, 6.0 mmol) in 1,1,1,3,3,3-
hexamethyldisilazane (HMDS; 8.4 mL) and ammonium sulfate
(8 mg) was kept under reflux overnight and concentrated to
dryness. To this residue were added a solution of 9 (925 mg,
1.93 mmol) in 1,2-dichloroethane (37 mL) and TMSOTf (0.62
mL, 3.2 mmol). After the mixture stirred for 1.5 h at room
temperature, saturated NaHCO3 was added to the reaction
mixture. The whole was extracted with CHCl3, and the
organic phase was washed with water (×2) and brine and dried
(Na2SO4). The filtrate was concentrated under reduced pres-
sure. The residue was purified by column chromatography
over silica gel (2% MeOH in CHCl3) to give 12a (841 mg, 78%).
Compound 12a (199 mg, 0.356 mmol) was dissolved in CH2-
Cl2 (3 mL). To this mixture was added a CH2Cl2 solution of
BCl3 (1 M, 2.14 mL, 2.14 mmol) at -78 °C. After 30 min of
stirring at -78 °C, the mixture was allowed to warm to -20
°C. After 2 h of stirring at -20 °C, the reaction was quenched
by saturated NaHCO3 and Celite filtration and then extracted
with CHCl3. The separated water phase was concentrated
under reduced pressure. The residue was purified on column
chromatography over silica gel (10-20% MeOH in CHCl3), and
the anomers were separated by HPLC (YMC-PACK SIL-06 20
× 250mm, YMC Co., Ltd., J apan; 7% MeOH in CHCl3, flow
rate 7 mL/min; retention time R, 23 min, â, 22 min) to give
R-6a (34 mg, 24%) and â-6a (12 mg, 11%) as amorphous solids.
â-Anomer (â-6a ): UV λmax (H2O) 272 nm (ꢀ 9600); 1H NMR
(DMSO-d6) δ 11.25 (1H, s, D2O exchangeable), 7.91 (1H, s),
6.08 (1H, d, J ) 5.9 Hz), 5.73 (1H, d, J ) 5.4 Hz, D2O
exchangeable), 5.44 (1H, d, J ) 4.9 Hz, D2O exchangeable),
5.24 (1H, t, J ) 4.4 Hz, D2O exchangeable), 3.99 (1H, q, J )
5.4 Hz), 3.94 (1H, q, J ) 5.8 Hz), 3.74 (1H, dd, J ) 5.4, 11.2
Hz), 3.67 (1H, dd, J ) 4.4, 11.2 Hz), 3.15 (1H, dt, J ) 4.4, 5.4
Hz), 2.21 (2H, q, J ) 7.3 Hz), 1.04 (3H, t, J ) 7.3 Hz); EI MS
m/ z 288 (M+). Anal. (C11H16N2O5S‚0.5H2O) C, H, N. R-Ano-
mer (R-6a ): UV λmax (H2O) 271 nm (ꢀ 10 200); 1H NMR (DMSO-
d6) δ 11.25 (1H, s, D2O exchangeable), 7.78 (1H, s), 5.77 (1H,
d, J ) 7.3 Hz), 5.69 (1H, d, J ) 5.4 Hz, D2O exchangeable),
5.52 (1H, d, J ) 4.9 Hz, D2O exchangeable), 4.91 (1H, t, J )
5.1 Hz, D2O exchangeable), 4.01 (1H, q, J ) 7.3 Hz), 3.85 (1H,
dt, J ) 3.9, 10.7 Hz), 3.66-3.61(1H, m), 3.56 (1H, ddd, J )
3.4, 3.9, 7.8 Hz), 3.44 (1H, dt, J ) 7.8, 10.7 Hz), 2.27 (2H, q, J
) 7.5 Hz), 1.05 (3H, t, J ) 7.5 Hz); EI MS m/ z 288 (M+). Anal.
(C11H16N2O5S‚0.5H2O) C, H, N.
1
291 nm (ꢀ 8300), 217 (ꢀ 11 900); H NMR (DMSO-d6) δ 11.69
(1H, s, D2O exchangeable), 8.42 (1H, s), 5.74 (1H, d, J ) 6.8
Hz), 5.73 (1H, d, J ) 6.8 Hz, D2O exchangeable), 5.50 (1H, d,
J ) 4.9 Hz, D2O exchangeable), 4.93 (1H, t, J ) 4.9 Hz, D2O
exchangeable), 4.05 (1H, dt, J ) 6.4, 6.8 Hz), 3.84 (1H, ddd, J
) 4.2, 4.9, 11.2 Hz), 3.72 (1H, dt, J ) 6.4, 7.3 Hz), 3.47 (1H,
ddd, J ) 4.2, 7.3, 7.8 Hz), 3.43 (1H, ddd, J ) 4.9, 7.8, 11.2
Hz); EI MS m/ z 386 (M+). Anal. (C9H11IN2O5S‚H2O) C, H, N.
(E)-5-(2-Ch lor ovin yl)-1-(4-t h io-D-a r a b in ofu r a n osyl)-
u r a cil (6d ). From 11 (462 mg, 0.967 mmol), R- and â-6d were
obtained as described in the synthesis of 6a . Anomers were
separated by HPLC (YMC-PACK ODS-AQ 20 × 250 mm, YMC
Co., Ltd., J apan; 15% CH3CN in H2O, flow rate 8 mL/min;
retention time R, 61 min, â, 56 min) to give R-6d (80 mg, 26%)
and â-6d (34 mg, 11%). â-Anomer (â-6d ): mp 241-243 °C
(crystallized from H2O); UV λmax (H2O) 297 nm (ꢀ 7300), 248
1
(ꢀ 9700); H NMR (DMSO-d6) δ 11.56 (1H, s, D2O exchange-
able), 8.34 (1H, s), 7.18 (1H, d, J ) 13.4 Hz), 6.62 (1H, d, J )
13.4 Hz), 6.07 (1H, d, J ) 5.9 Hz), 5.74 (1H, d, J ) 5.9 Hz,
D2O exchangeable), 5.44 (1H, d, J ) 4.9 Hz, D2O exchange-
able), 5.33 (1H, t, J ) 5.1 Hz, D2O exchangeable), 4.01 (1H,
dt, J ) 5.9, 6.4 Hz), 3.95 (1H, dt, J ) 5.9, 6.4 Hz), 3.77-3.73
(2H, m), 3.17-3.14 (1H, m); EI MS m/ z 320 (M+). Anal.
(C11H13ClN2O5S‚0.5H2O) C, H, N. R-Anomer (R-6d ): mp 234-
238 °C (crystallized from H2O); UV λmax (H2O) 295 nm (ꢀ
1
12 200), 249 nm (ꢀ 15 600); H NMR (DMSO-d6) δ 11.60 (1H,
s, D2O exchangeable), 8.25 (1H, s), 7.26 (1H, d, J ) 13.4 Hz),
6.73 (1H, d, J ) 13.4 Hz), 5.76 (1H, d, J ) 7.3 Hz), 5.74 (1H,
d, J ) 5.9 Hz, D2O exchangeable), 5.59 (1H, d, J ) 4.4 Hz,
D2O exchangeable), 4.94 (1H, t, J ) 5.4 Hz, D2O exchangeable),
4.04 (1H, dt, J ) 7.3, 7.8 Hz), 3.87 (1H, dt, J ) 3.9, 11.2 Hz),
3.68 (1H, dt, J ) 7.8, 8.3 Hz), 3.61 (dt, 1H, J ) 3.9, 8.3 Hz),
3.42-3.39 (1H, m); EI MS m/ z 320 (M+). Anal. (C11H13
ClN2O5S) C, H, N.
-
(E)-5-(2-Br om ovin yl)-1-(4-th io-D-a r a bin ofu r a n osyl)u r a -
cil (6e). From 11 (619 mg, 1.29 mmol), R- and â-6e were
obtained as described in the synthesis of 6a . The residue was
purified on column chromatography over silica gel (15% MeOH
in CHCl3), and anomers were separated by HPLC (Wakosil-II
5C18 HG 20 × 250 mm, Wako Pure Chemicals Industries, Ltd.,
J apan; 20% CH3CN in H2O, flow rate 8 mL/min; retention time
R, 34 min, â, 32 min) to give R-6e (187 mg, 39%) and â-6e (63
mg, 13%). â-Anomer (â-6e): mp 216 °C dec (crystallized from
50% aqueous EtOH); UV λmax (H2O) 297 nm (ꢀ 10 400), 251 (ꢀ
14 100); 1H NMR (DMSO-d6) δ 11.58 (1H, s, D2O exchange-
able), 8.36 (1H, s), 7.25 (1H, d, J ) 13.5 Hz), 6.89 (1H, d, J )
13.5 Hz), 6.06 (1H, d, J ) 5.9 Hz), 5.75 (1H, d, J ) 5.9 Hz,
D2O exchangeable), 5.45 (1H, d, J ) 4.9 Hz, D2O exchange-
able), 5.34 (1H, t, J ) 5.1 Hz, D2O exchangeable), 4.02 (1H,
dt, J ) 5.9, 6.8 Hz), 3.94 (1H, dt, J ) 3.4, 6.8 Hz), 3.77 (1H,
dt, J ) 4.9, 11.2 Hz), 3.73 (1H, dt, J ) 5.4, 11.2 Hz), 3.15 (1H,
5-Meth yl-1-(4-th io-D-ar abin ofu r an osyl)u r acil (6b). From
11 (925 mg, 1.93 mmol), R- and â-6b were obtained as
described in the synthesis of 6a . Anomers were separated by
HPLC (YMC-PACK SIL-06 20 × 250mm, YMC Co., Ltd.,
J apan; 15% MeOH in CHCl3, flow rate 8 mL/min; retention
time R, 20 min, â, 18 min) to give R-6b (137 mg, 36%) and
â-6b (53 mg, 14%). â-Anomer (â-6b): mp 108-111 °C (crys-
tallized from H2O); UV λmax (H2O) 272 nm (ꢀ 10 500); 1H NMR
(DMSO-d6) δ 11.27 (1H, s, D2O exchangeable), 7.95 (1H, s),
6.09 (1H, d, J ) 5.4 Hz), 5.73 (1H, d, J ) 5.4 Hz, D2O
exchangeable), 5.44 (1H, d, J ) 4.4 Hz, D2O exchangeable),
4.02 (1H, dt, J ) 5.4, 6.4 Hz), 3.95 (1H, dt, J ) 5.9, 6.4 Hz),
3.78 (1H, dd, J ) 4.9, 11.2 Hz), 3.70 (1H, dd, J ) 5.9, 11.2
Hz), 3.17-3.14 (1H, m), 1.78 (3H, s); EI MS m/ z 274 (M+).
Anal. (C10H14N2O5S‚0.75H2O) C, H, N. R-Anomer (R-6b): an
1
dt, J ) 3.4, 4.9 Hz); EI MS m/ z 364, 366 (M+). Anal. (C11H13
-
amorphous solid; UV λmax (H2O) 271 nm (ꢀ 10 500); H NMR
(DMSO-d6) δ 11.29 (1H, s, D2O exchangeable), 7.85 (1H, s),
5.76 (1H, d, J ) 7.8 Hz), 5.69 (1H, d, J ) 5.9 Hz, D2O
exchangeable), 5.54 (1H, d, J ) 4.9 Hz, D2O exchangeable),
5.25 (1H, t, J ) 5.1 Hz, D2O exchangeable), 4.91 (1H, t, J )
5.1 Hz, D2O exchangeable), 4.01 (1H, dt, J ) 7.8, 8.3 Hz), 3.87-
3.83 (1H, m), 3.65 (1H, dt, J ) 3.4, 8.3 Hz), 3.56 (1H, dt, J )
3.4, 8.3 Hz), 3.39-3.36 (1H, m), 1.84 (3H, s); EI MS m/ z 274
(M+). Anal. (C10H14N2O5S‚0.5H2O) C, H, N.
BrN2O5S) C, H, N. R-Anomer (R-6a ): mp 201-203 °C (crystal-
lized from 50% aqueous EtOH); UV λmax (H2O) 296 nm (ꢀ
12 300), 251 (ꢀ 15 300); 1H NMR (DMSO-d6) δ 11.61 (1H, s,
D2O exchangeable), 8.28 (1H, s), 7.33 (1H, d, J ) 13.7 Hz),
6.99 (1H, d, J ) 13.7 Hz), 5.77 (1H, d, J ) 7.3 Hz), 5.74 (1H,
d, J ) 3.4 Hz, D2O exchangeable), 5.60 (1H, d, J ) 4.4 Hz,
D2O exchangeable), 4.95 (1H, t, J ) 5.1 Hz, D2O exchangeable),
4.01 (1H, dt, J ) 7.8, 7.3 Hz), 3.86 (1H, dd, J ) 3.9, 11.2 Hz),
3.68 (1H, dt, J ) 7.8, 8.3 Hz), 3.61 (1H, dt, J ) 3.9, 8.3 Hz),
3.43 (1H, dd, J ) 8.3, 11.2 Hz); EI MS m/ z 364, 366 (M+).
Anal. (C11H13BrN2O5S‚0.5H2O) C, H, N.
5-Iod o-1-(4-th io-D-a r a bin ofu r a n osyl)u r a cil (6c). From
11 (503 mg, 1.05 mmol), R- and â-4c were obtained as
described in the synthesis of 6a . Anomers were separated by