Active Site Probes of NOS
J ournal of Medicinal Chemistry, 2000, Vol. 43, No. 15 2943
P ep t oid An a logu es 6-8. The procedure for solid-phase
synthesis of the peptoid analogues was similar to the general
procedure mentioned above with two exceptions: each coupling
step was conducted overnight; 2-bromoacetic acid, NR-Boc-
was warmed to room temperature, a solution of 1 N NaCO3
(100 mL) was added carefully. The organic layer was sepa-
rated, and washed with water, then with 1 N NaCO3 solution.
The solvent was evaporated, resulting in a transparent oily
product (1.5 g, 25% yield): 1H NMR (CDCl3) δ 7.30 (m, 5H),
6.21 (brs, 1H), 5.97 (brs, 1H), 5.83 (brs, 1H), 5.08 (s, 2H), 4.20
(m. 1H), 2.25 (m, 2H), 2.05-2.20 (m, 1H), 1.82-1.97 (m, 1H),
1.43 (s, 9H).
2-N-(Ben zoxyca r bon yl)-4-N-(9-flu or en ylm eth yloxyca r -
bon yl)-L-2,4-d ia m in obu tyr ic Acid ter t-Bu tyl Ester (19).
The amide moiety of 18 (1.5 g 4.5 mmol) was converted into
an amine and was protected with an Fmoc group in a one-pot
reaction according to the procedure of Kazmierski.28 The
product was purified by flash chromatography (hexanes:EtOAc
3:1) and was obtained as a white solid in a 46% yield (1.31 g):
1H NMR (CDCl3) δ 7.77 (d, 2H), 7.61 (d, 2H), 7.35 (m, 9H),
5.56 (brs, 1H), 5.14 (s, 2H), 4.37 (m, 2H), 4.24 (t, 1H), 3.52 (m,
1H), 3.10 (m, 1H), 2.12 (m, 1H), 1.70 (m, 1H), 1.45 (s, 9H).
alkanediamines, and Boc-L-ArgNO were in 5 equiv excess.
2
P ep toid -Dbu (6): 1H NMR (D2O) δ 4.60 (t, 1H), 4.00-4.30
(m, 2H), 3.90 (m, 1H), 3.45 (m, 1H), 3.22 (m, 4H), 1.75-1.98
(m, 2H), 1.50-1.75 (m, 2H); HRMS (M + 1) calcd for C10H22N8O4
319.1837, found 319.1823. Anal. (C10H22N8O4‚2TFA‚0.5H2O)
C, H, N.
P ep toid -Or n (7): 1H NMR (D2O) δ 4.57 (t, 1H), 3.95-4.23
(m, 2H), 3.45 (m, 2H), 3.23 (m, 2H), 2.92 (m, 2H), 1.75-2.00
(m, 4H), 1.45-1.75 (m, 2H); HRMS (M + 1) calcd for C11H24N8O4
333.1993, found 333.1975. Anal. (C11H24N8O4‚2TFA‚0.5H2O)
C, H, N.
1
P ep toid -Lys (8): H NMR (D2O) δ 4.55 (t, 1H), 3.91-4.20
(m, 2H), 3.44 (m, 1H), 3.30 (m, 3H), 2.98 (m, 2H), 1.83-2.03
(m, 2H), 1.54-1.80 (m, 6H); HRMS (M + 1) calcd for C12H26N8O4
347.2150, found 347.2183. Anal. (C12H26N8O4‚2TFA‚0.5H2O)
C, H, N.
4-N-(9-F lu or en ylm eth yloxyca r bon yl)-L-2,4-d ia m in obu -
tyr ic Acid ter t-Bu tyl Ester (20). Compound 19 (1.31 g, 2
mmol) was dissolved in methanol (20 mL) and was hydroge-
nated with a 5% Pd/C catalyst until the Cbz group was
removed. The catalyst was filtered through a Celite pellet, and
the methanol was evaporated in a vacuum. To avoid cleavage
of the Fmoc group, which usually reacts much slower under
the same conditions, TLC (hexanes:EtOAc:NH4OH 1:1:0.1) was
taken every 0.5 h to monitor the progress of the reaction until
compound 19 was gone and most of the product was compound
20: 1H NMR (CDCl3) δ 7.78 (d, 2H), 7.59 (d, 2H), 7.39 (t, 2H),
7.30 (t, 2H), 5.62 (brs, 1H), 4.40 (d, 2H), 4.37 (m, 2H), 4.24 (t,
1H), 3.52 (m, 1H), 3.10 (m, 1H), 2.12 (m, 1H), 1.70 (m, 1H),
1.45 (s, 9H). This yellow oily compound (0.77 g, 95% yield) was
used in the next step without further purification.
N-Meth yla ted Dip ep tid e Am id es 9-11. Fmoc-L-Dbu-
(Boc)-OH, Fmoc-L-Orn(Boc)-OH, and Fmoc-L-Lys(Boc)-OH were
coupled to the Rink resin as described in the general procedure.
N-Methylation was carried out according to the procedure of
Yang et al.23
L-Ar gNO -(N-CH3)-L-Dbu -NH2 (9): 1H NMR (D2O) δ 4.95
2
(dd, 1H), 4.54 (t, 1H), 3.75 (t, 2H), 2.99 (s, 3H), 2.94 (m, 2H),
2.20 (m, 1H), 2.08 (m, 1H), 1.89 (m, 2H), 1.67 (m, 2H); HRMS
(M + 1) calcd for C11H24N8O4 333.1993, found 333.1977. Anal.
(C11H24N8O4‚2TFA‚H2O) C, H, N.
L-Ar gNO -(N-CH3)-L-Or n -NH2 (10): 1H NMR (D2O) δ 4.89
2
(dd, 1H), 4.54 (t, 1H), 3.29 (t, 2H), 3.02 (s, 3H), 2.97 (m, 2H),
1.91 (m, 4H), 1.64 (m, 4H); HRMS (M + 1) calcd for C12H26N8O4
347.2150, found 347.2183. Anal. (C12H26N8O4‚2TFA‚0.5H2O)
C, H, N.
NO
L-Ar gNO -L-Dbu ter t-Bu tyl Ester (13). Fmoc-L-Arg -OH
2
2
(864 mg, 1.96 mmol) and L-Dbu(Fmoc) tert-butyl ester (20; 770
mg, 1.78 mmol) were coupled to form Fmoc-L-ArgNO -L-Dbu-
L-Ar gNO -(N-CH3)-L-Lys-NH2 (11): 1H NMR (D2O) δ 4.87
2
2
(Fmoc) tert-butyl ester as described.29 The Fmoc-L-ArgNO -L-
2
(dd, 1H), 4.53 (t, 1H), 3.31 (t, 2H), 3.04 (s, 3H), 2.96 (m, 2H),
1.91 (m, 4H), 1.69 (m, 4H), 1.35 (m, 2H); HRMS (M + 1) calcd
for C13H28N8O4 361.2307, found 361.2305. Anal. (C13H28N8O4‚
2TFA‚H2O) C, H, N.
Dbu(Fmoc) tert-butyl ester (600 mg, 40% yield) was purified
by flash chromatography (1% methanol in EtOAc): 1H NMR
(CDCl3) δ 7.74 (m, 4H), 7.55 (m, 4H), 7.39 (m, 4H), 7.28 (m,
4H), 6.02 (brs, 1H), 5.44 (brs, 1H), 4.49 (brs, 1H), 4.30 (m, 4H),
4.12 (brs, 1H), 3.05-3.40 (m, 4H), 2.01 (m, 1H), 1.83 (m, 1H),
1.65 (m, 4H), 1.40 (s, 9H). The Fmoc-protected dipeptide (600
mg, 0.78 mmol)) was treated with 20% piperidine in DMF (10
mL). After being stirred at room temperature for a 0.5 h, the
solution was dried under high vacuum (at least 8 h, to make
sure all of the piperidine and DMF were evaporated). The
residue was dissolved in water and washed with ether twice.
The aqueous layer was acidified to pH 4 using 10% HCl and
lyophilized to dryness (170 mg, 50% yield): 1H NMR (D2O) δ
4.51 (m, 1H), 4.09 (t, 1H), 3.34 (m, 2H), 3.10 (t, 2H), 2.27 (m,
1H), 2.07 (m, 1H), 1.91 (m, 2H), 1.72 (m, 2H), 1.44 (s, 9H);
HRMS (M + 1) calcd for C14H29N7O5 376.2303, found 376.2325.
Anal. (C14H29N7O5‚2TFA‚H2O) C, H, N.
L-Ar gNO -L-Dbu Meth yl Ester (12). An ether solution of
2
CH2N2 was dropped slowly into a stirred solution of Fmoc-L-
Dbu(Boc)-OH (380 mg, 0.86 mmol) in ether. The reaction was
stirred for 10 min more and stopped by evaporation of the
ether. The oily product, Fmoc-L-Dbu(Boc)-OCH3 (390 mg,
quantitative yield), was used in the next step without purifica-
tion. After removal of the Fmoc group by catalytic hydrogena-
tion, L-Dbu(Boc)-OCH3 was purified chromatographically
(EtOAc:CH3OH:NH4OH 20:1:0.1), giving L-Dbu(Boc)-OCH3
(190 mg, 97% yield): 1H NMR (CDCl3) δ 5.24 (brs, 1H), 3.67
(s, 3H), 3.45 (dd, 1H), 3.29 (m, 1H), 3.19 (m, 1H), 1.90 (m, 1H),
1.63 (m, 1H), 1.38 (s, 9H). Boc-L-ArgNO -OH (295 mg, 0.92
2
mmol) and L-Dbu(Boc)-OCH3 (190 mg, 0.84 mmol) were
coupled to form the dipeptide, Boc-L-ArgNO -L-Dbu(Boc)-OCH3
2
L-Ar gNO -L-Dbu -OH (14). Compound 13 (100 mg, 0.23
2
(350 mg, 80% yield), according to the procedure of Silverman
et al.:27 1H NMR (CDCl3) δ 7.55 (brs, 1H), 5.48 (brs, 1H), 4.87
(brs, 1H), 4.64 (m. 1H), 4.32 (brs, 1H), 3.73 (s, 3H), 3.22-3.55
(m, 3H), 3.19 (m, 1H), 1.50-2.19 (m, 6H), 1.41 (s, 18H).
mmol) was treated with TFA (4 mL) for 1 h. The solution was
concentrated to dryness. The oily residue was dissolved in a
small amount of water, which was washed with ether and
lyophilized to a white foam (80 mg, 92% yield): 1H NMR (D2O)
δ 4.53 (dd, 1H), 4.06 (t, 1H), 3.27 (m, 2H), 3.07 (t, 2H), 2.26
(m, 1H), 2.07 (m, 1H), 1.92 (m, 2H), 1.70 (m, 2H); HRMS
(M + 1) calcd for C10H21N7O5 320.1677, found 320.1684. Anal.
(C10H21N7O5‚2TFA‚H2O) C, H, N.
l-ArgNO -L-Dbu methyl ester (12) was obtained after deprotec-
2
tion of the Boc group using TFA/CH2Cl2 (1:1 v/v) (104 mg, 96%
yield): 1H NMR (D2O) δ 4.38 (dd, 1H), 3.98 (t, 1H), 3.68 (s,
3H), 3.20 (t, 2H), 2.98 (t, 2H), 2.20 (m, 1H), 1.99 (m, 1H), 1.80
(m, 2H), 1.62 (m, 2H); HRMS (M + 1) calcd for C11H23N7O5
334.1833, found 334.1834. Anal. (C11H23N7O5‚2TFA‚H2O) C,
H, N.
Nr-(Ben zoxyca r b on yl)-L-glu t a m in e ter t-Bu t yl E st er
(18). This compound was synthesized according to the proce-
dure of Anderson et al.27 To a suspension of Cbz-L-Gln (5 g,
17.8 mmol) in CH2Cl2 (10 mL) in a pressure bottle was added
concentrated sulfuric acid (100 µL). While the bottle was cooled
in liquid nitrogen, precooled isobutylene liquid (5.51 g, 98
mmol) was added to the mixture. The pressure bottle was
sealed and kept at room temperature for 6 days. The bottle
was cooled again before the lid was opened. After the mixture
L-Ar gNO -NH(CH2)n NH2 (n ) 2-4, 15-17). To an ice-cooled
2
mixture of Wang resin (2.4 g, 0.76 mmol/g, 100-200 mesh)
and 4-nitrophenyl chloroformate (1.10 g, 3 equiv) in CH2Cl2
(15 mL) was added 4-methylmorpholine (602 µL, 3 equiv). The
mixture was stirred overnight from 0 °C to room temperature.
The resin was drained, washed successively with CH2Cl2,
methanol, water, and methanol and dried in vacuum. The resin
was treated with L-ArgNO methyl ester (3 equiv), HOBt (3
2
equiv), and diisopropylethylamine (DIEA; 5 equiv) in DMF/
CH2Cl2 (1:1, 15 mL) overnight at room temperature. After
removal of the excess reagents, the resin was washed thor-