Boronic acid-based inhibitor of autotaxin reveals
rapid turnover of LPA in the circulation
Harald M. H. G. Albersa,b, Anping Dongc, Laurens A. van Meeterena, David A. Egand, Manjula Sunkarac,
Erica W. van Tilburga, Karianne Schuurmana, Olaf van Tellingene, Andrew J. Morrisc, Susan S. Smythc,
Wouter H. Moolenaara,f, and Huib Ovaaa,b,1
f
aDivision of Cell Biology, bNetherlands Proteomics Centre, Centre of Biomedical Genetics, dDivision of Molecular Carcinogenesis, and eDepartment of
c
Clinical Chemistry, The Netherlands Cancer Institute, 1066 CX Amsterdam, The Netherlands; and Division of Cardiovascular Medicine, University of
Kentucky, Lexington, KY 40536
Communicated by Joseph Schlessinger, Yale University School of Medicine, New Haven, CT, February 16, 2010 (received for review October 21, 2009)
Autotaxin (ATX) is
a
secreted nucleotide pyrophosphatase/
have been explored as ATX inhibitors (23–26). However, such
lipid inhibitors have the inherent danger of inadvertently activat-
ing downstream LPA/S1P receptors, thereby inducing the oppo-
site of the intended effect. Furthermore, lipids offer relatively few
avenues for chemical diversification and usually have poor phar-
macokinetic properties. Nonlipid inhibitors of ATX have recently
been identified, but their potencies are low (27).
In this study we screened small-molecule libraries to search for
unique ATX inhibitors. We identified thiazolidinedione com-
pounds that selectively inhibit ATX activity and are readily amen-
able to further chemical diversification. We have optimized these
molecules by adopting an active-site-targeted strategy that has
proved successful for the development of the boronic acid-based
proteasome inhibitor bortezomib (28), which is in clinical use
(29). We show that a boronic acid-based inhibitor potently inhi-
bits ATX both in vitro and in vivo. When administered to mice,
our compound (HA130) induces a remarkably rapid fall in plasma
LPA levels, indicating that the turnover of circulating LPA is
much more dynamic than previously appreciated. We conclude
that boronic acid-based inhibitors hold promise as candidate
drugs to target the ATX-LPA axis in vivo.
phosphodiesterase that functions as a lysophospholipase D to
produce the lipid mediator lysophosphatidic acid (LPA), a mitogen,
chemoattractant, and survival factor for many cell types. The ATX-
LPA signaling axis has been implicated in angiogenesis, chronic
inflammation, fibrotic diseases and tumor progression, making this
system an attractive target for therapy. However, potent and selec-
tive nonlipid inhibitors of ATX are currently not available. By
screening a chemical library, we have identified thiazolidinediones
that selectively inhibit ATX-mediated LPA production both in vitro
and in vivo. Inhibitor potency was approximately 100-fold increased
(IC50 ∼ 30 nM) after the incorporation of a boronic acid moiety,
designed to target the active-site threonine (T210) in ATX. Intrave-
nous injection of this inhibitor into mice resulted in a surprisingly
rapid decrease in plasma LPA levels, indicating that turnover of
LPA in the circulation is much more dynamic than previously appre-
ciated. Thus, boronic acid-based small molecules hold promise as
candidate drugs to target ATX.
high-throughput screening ∣ lysophosphatidic acid ∣ lysophospholipase D ∣
small-molecule inhibitor ∣ phosphodiesterase
utotaxin (ATX or NPP2) is a secreted nucleotide pyropho-
Results
A
sphatase/phosphodiesterase (NPP) originally isolated as an
Discovery of Small-Molecule Inhibitors of ATX. The hydrolytic activity
of ATX originates from a single catalytic site at threonine
210 (T210) in the central phosphodiester domain (5) (Fig. 1).
To discover unique ATX inhibitors, we screened a collection
of ∼40; 000 drug-like small molecules using the hydrolysis of
bis(4-nitrophenyl) phosphate (bis-pNPP) by ATX as a readout.
Among the most potent hits, we selected a thiazolidinedione ser-
ies for optimization since the thiazolidinedione core is readily
amenable to chemical diversification (Fig. 2A). Inhibitor (A)
showed an IC50 value of 56 nM using 1 mM bis-pNPP as substrate.
For validation of A, we measured the inhibition of the ATX-
catalyzed release of choline from LPC. We established that
recombinant ATX has a Km value for LPC of 94 μM (Fig. S1).
Compound A inhibited ATX with an IC50 value of 2.5 μM using
40 μM LPC as a substrate (Fig. 3A). However, it should be noted
that A has a 35% residual ATX activity (Fig. 3B). Inhibition of
ATX-mediated LPA production was confirmed by measuring
autocrine motility factor from melanoma cells (1). ATX, a
∼120 kDa glycoprotein, is unique amongst the NPPs in that it
functions as a lysophospholipase D (lysoPLD) that converts ex-
tracellular lysophosphatidylcholine (LPC) into the lipid mediator
lysophosphatidic acid (LPA; mono-acyl-sn-glycero-3-phosphate)
(2–5). LPA acts on specific G protein-coupled receptors and
thereby stimulates the migration, proliferation, and survival of
many cell types (6 and 7) (Fig. 1). ATX is produced by various
tissues and is the major LPA-producing enzyme in the circulation.
Newly produced LPA is subject to degradation by membrane-
bound lipid phosphate phosphatases (LPPs) (8 and 9). However,
little is known about the dynamic regulation of steady-state LPA
levels in vivo.
ATX is essential for vascular development (10 and 11) and is
found overexpressed in various human cancers (12). Forced over-
expression of ATX or individual LPA receptors promotes tumor
progression in mouse models (13–16), while LPA receptor
deficiency protects from colon carcinogenesis (17). In addition
to its role in cancer, ATX-LPA signaling has been implicated
in lymphocyte homing and (chronic) inflammation (18), fibrotic
diseases (19 and 20), and thrombosis (21). Therefore, the ATX-
LPA axis qualifies as an attractive target for therapies.
Potent and selective ATX inhibitors are now needed as a start-
ing point for the development of targeted anti-ATX/LPA therapy.
Direct targeting of LPA receptors seems to be a less attractive
strategy, since LPA acts on multiple receptors that show overlap-
ping activities (2 and 6). Since the initial finding that ATX is sub-
ject to product inhibition by LPA and sphingosine 1-phosphate
(S1P) (22), various synthetic phospho- and phosphonate lipids
Author contributions: H.M.H.G.A., L.A.v.M., D.A.E., O.v.T., A.J.M., S.S.S., W.H.M., and H.O.
designed research; H.M.H.G.A., A.D., L.A.v.M., D.A.E., M.S., E.W.v.T., K.S., O.v.T., and H.O.
performed research; H.M.H.G.A., L.A.v.M., D.A.E., E.W.v.T., A.J.M., S.S.S., and H.O.
contributed new reagents/analytic tools; H.M.H.G.A., A.D., L.A.v.M., D.A.E., M.S.,
E.W.v.T., K.S., O.v.T., A.J.M., S.S.S., W.H.M., and H.O. analyzed data; and H.M.H.G.A.,
W.H.M., and H.O. wrote the paper.
The authors declare no conflict of interest.
Freely available online through the PNAS open access option.
1To whom correspondence should be addressed. E-mail: h.ovaa@nki.nl.
PNAS ∣ April 20, 2010 ∣ vol. 107 ∣ no. 16 ∣ 7257–7262