C. Li et al.
Food Chemistry 357 (2021) 129746
reaction conditions using 100 mM D-allulose, D-fructose, D-tagatose, or D-
sorbose as the substrate, respectively. One unit of enzyme activity was
Table 1
Kinetic parameters of free and immobilized PsDAE for D-fructose and D-allulose.
defined as the amount of the enzyme required to catalyze 1 μmol sub-
Substrate
Kinetic parameters
Free enzyme
Immobilized enzyme
strate per minute under standard assay conditions. The kinetic param-
eters of free and immobilized PsDAE were determined under standard
conditions using a range of D-fructose concentrations (10–500 mM). The
Michaelis-Menten constant (Km), turnover number (kcat), and catalytic
efficiency (kcat/Km), were calculated using a Lineweaver Burk plot.
D-Fructose
Km (mM)
74.7 ± 2.5
47.2 ± 1.3
0.63
122.4 ± 3.2
42.2 ± 1.5
0.34
kcat (sꢀ 1
)
k
cat/Km (s-1mMꢀ 1
)
)
D-Allulose
Km (mM)
41.7 ± 1.2
63.6 ± 1.7
1.53
71.1 ± 1.8
58.0 ± 1.4
0.82
kcat (sꢀ 1
)
k
cat/Km (s-1mMꢀ 1
2.7. Production of D-allulose using free and immobilized PsDAE
3.2. Characterization of PsDAE
For the biocatalytic production of D-allulose, solutions containing 50
g/L, 100 g/L, and 500 g/L of D-fructose were treated with 205U isolated
PsDAE or 0.2 g epoxy resin ES-103 with immobilized PsDAE (containing
205U PsDAE) in a 10.0 mL reaction mixture comprising 1.0 mM Mg2+ in
20 mM PBS buffer (pH 7.4). The reaction mixtures were incubated at
60 ◦C and samples were drawn at regular time intervals to measure the D-
allulose production by HPLC. At the end of the reaction, immobilized
PsDAE was washed three times with 20 mM PBS buffer (pH 7.4) and
reused for the next cycle of reaction. The reaction procedure was carried
out in 15 sequential batches. The reusability of immobilized PsDAE was
analyzed based on the residual activity after every cycle, whereby the
activity during the initial cycle was defined as 100%.
The coding sequence of PsDAE was codon-optimized, overexpressed
in E. coli BL21 (DE3) with a His6 tag, and purified using Ni-affinity
chromatography. The molecular weight of PsDAE was estimated based
on SDS-PAGE, indicating a size of approximately 32 kDa (Fig. S2).
The biochemical properties of free and immobilized PsDAE were
characterized using D-fructose as the substrate (Fig. 2). The HPLC
retention times of D-allulose and D-fructose were 8.4 and 10.5 min,
respectively (Fig. S3a). PsDAE was optimally active in PBS buffer pH 7.5,
and was active in a pH range from 5.0 to 11.0. Notably, immobilized
PsDAE showed high activity within a wider pH range (pH 6.5–11.0) than
the free enzyme (pH 7.0–9.0) (Fig. 2a). The temperature-activity profile
for both the free and immobilized PsDAE revealed an optimal temper-
◦
ature of 60 C, with more than 80% relative activity between 55 and
2.8. Biocatalytic production of D-allulose via a multienzyme cascade
65 ◦C. Moreover, the immobilized PsDAE exhibited higher activities at
60–80 ◦C than the free enzyme (Fig. 2b). The free enzyme was stable for
12 h at temperatures ranging from 40 to 50 ◦C. Moreover, PsDAE
retained over 50% residual activity after 6 h at 60 ◦C. However, the
enzyme was completely inactivated after 3 h at 70 ◦C (Fig. 2c). By
contrast, other DAEs from the same family, including those from
A. tumefaciens (Kim, Hyun, Kim, Lee, & Oh, 2006), C. cellulolyticum (Mu,
Chu, Xing, Yu, Zhou, & Jiang, 2011a), and C. scindens (Zhang et al.,
2013) were relatively stable below 45–50 ◦C, and their relative activity
decreased significantly at 55 ◦C. Furthermore, the DAE from Desmospora
sp. was inactive at temperatures over 60 ◦C (Xing, 2013). Therefore,
PsDAE exhibited higher thermostability than other characterized DAEs.
Notably, immobilization of PsDAE onto the epoxy support ES-103B
greatly improved its thermal stability, reaching a half-life of 12 h at
60 ◦C (Fig. 2d). The effects of different divalent metal ions on the activity
of free PsDAE are shown in Fig. 2e. PsDAE displayed activity in the
absence of a metal cofactor, but its activity was increased in the presence
of Co2+, Mg2+, and Mn2+ by 1.75-, 1.28-, and 1.17-fold, respectively.
These results indicated that PsDAE is a metalloenzyme, similar to other
homologous members of the same family (Kim et al., 2006; Mu, Chu,
Xing, Yu, Zhou, & Jiang, 2011).
Biosynthetic production of D-allulose from sucrose was performed
using a multienzyme cascade system with 500 g/L sucrose in a 10.0 mL
reaction mixture. The reaction was conducted at 55 ◦C for 2 h with 500
g/L sucrose and 0.5 g/L INV (200000 U/g) in NaAc-HAc buffer (pH 4.5)
in the first step. Subsequently, the pH of the reaction mixture was
adjusted to 7.5 using 1 M NaOH and then 50–200 g/L immobilized GI
(50000 U/g) and 20 g/L immobilized PsDAE were added into the re-
action system. The reaction was implemented for another 1.5 h,
whereby the substrate consumption and product formation were
analyzed by HPLC every 30 min.
2.9. Conversion of native high-calorie sugars in fruit juices into D-allulose
in situ
Pure mango juice, orange juice, and sugar cane juice were individ-
ually treated with INV, GI, and PsDAE via the two-step reaction strategy.
In the initial step, 0.5 g/L INV was directly added into 10 mL of the
100% fruit juice. The reaction was carried out at 55 ◦C for 1 h. In the
next step, the pH of the fruit juices was adjusted to 7.5 using 1 M NaOH
and then 150 g/L immobilized GI and 20 g/L immobilized PsDAE were
added to the fruit juices. The reaction was performed for another 1 h,
and D-allulose formation was followed using HPLC every 10 min.
The substrate specificity of PsDAE was investigated using D-allulose,
D-fructose D-tagatose, and D-sorbose as substrates. The maximal activity
of PsDAE was observed with D-allulose, while the activity decreased for
other substrates in the order D-fructose, D-tagatose, D-sorbose (Fig. 2f).
This result was similar to the DAEs from C. cellulolyticum and Rumino-
coccus sp. (Mu et al., 2011; Zhu et al., 2012). Due to the high specificity
of PsDAE for D-allulose, it can be classified as a D-allulose 3-epimerase.
The kinetic parameters of the free and immobilized PsDAE for D-allu-
lose and D-fructose were also investigated. For D-allulose, the free and
immobilized PsDAE showed Km 41.7 vs 71.1 mM and kcat/Km 1.53 vs
0.82 s-1mMꢀ 1. As for D-fructose, they showed Km 74.7 vs 122.4 mM and
3. Results and discussion
3.1. Multiple sequence alignment
A search in the NCBI database for DAE sequences yielded an unusual
epimerase from Pirellula sp. SH-Sr6A (PsDAE; GenBank Accession No.
AMV33274.1). A phylogenetic tree was constructed based on the protein
sequence of PsDAE, together with characterized DAEs and DTEs from
other organisms. The phylogenetic tree revealed that PsDAE was closely
related to homologs from Rhodobacter sphaeroides (GenBank:
ACO59490.1) and Sinorhizobium sp. (GenBank: WP_069063284.1).
Moreover, PsDAE exhibited the highest amino acid sequence identity
with DAE from Sinorhizobium sp. (26.95%), and DTE from Rhodobacter
sphaeroides (26.88%) (Fig. S1). This percentage was still low and indi-
cated the uniqueness of PsDAE.
k
cat/Km 0.63 vs 0.34 s-1mMꢀ 1. These indicated that both free and
immobilized PsDAE exhibited higher affinity and catalytic efficiency
with D-allulose than D-fructose (Table 1). Notably, the immobilized
PsDAE enzyme exhibited a kcat that was nearly the same as that of its free
form, revealed that immobilization did not significantly alter the enzy-
matic properties of PsDAE (Table 1 and Fig. 2).
4