5026
T. I. Lazarova et al. / Bioorg. Med. Chem. Lett. 16 (2006) 5022–5027
Scheme 4. Reagents and conditions: (a) 1.0 equiv (Boc)2O, 2.5 equiv Et3N, DCM, rt, 18 h, 96%; (b) 5 equiv NaBH4, methanol, rt, 1 h, 83%; (c)
1.0 equiv nicotinoyl chloride, 3 equiv i-Pr2EtN, DCM, rt, 18 h, 76%; (d) 1 equiv dipinacolato diboron, 3 equiv KOAc, 0.1 equiv Pd(dppf)Cl2, DMSO,
80 °C, 18 h, 73%; (e) 4 N HCl, rt, 30 min, 97%; (f) 1 equiv 6, 1 equiv i-Pr2EtN, DMF, rt, 18 h, 85%; (g) TFA, rt, 5 h, 92%.
5. (a) Gould, W. R.; Leadley, R. J. Curr. Phar. Des. 2003, 9,
2337; (b) Samana, M. Throm. Res. 2002, 106, 267; (c) Rai,
R.; Sprengeler, P. A.; Elrod, K. C.; Young, W. B. Curr.
Med. Chem. 2001, 8, 101.
Table 2. In vitro biological data
Compound IC50 (lM) IC50 (lM) IC50 (lM) IC50 (lM)
FXIa
FXa
Thrombin Trypsin
10
13
7.3
1.4
175.4
43.6
30.8
12.3
20.3
>200
6. Jin, L.; Pandey, P.; Babine, R. E.; Gorga, J. C.; Seidl, K.
J.; Gelfand, E.; Weaver, D. T.; Abdel-Meguid, S. S.;
Strickler, J. E. J. Biol. Chem. 2005, 6, 4704.
7. Salomon, O.; Zivelin, A.; Livnat, T.; Dardik, R.;
Loewenthal, R.; Avishal, O.; Steinberg, D. M.; Rosove,
M. H.; O’Connell, N.; Lee, C. A.; Seligsohn, U. Blood
2003, 101, 4783.
carbonyl is probably not contributing much to specific-
ity since the other proteases tested can make this inter-
action as well, the steric clash between leucine 146 and
the pyridyl group of 13 is not likely to be accommodated
well by all serine proteases. This observation can explain
the gain in selectivity observed with compound 13 com-
pared to compound 10. The pyridyl ring is also posi-
tioned so that additional substituents on the meta- or
ortho-positions (relative to the boronic acid) could make
additional interactions in both the S2 subsite and a flex-
ible pocket near the mouth of the S1 pocket that is
formed by lysine 192, cysteine 191, cysteine 219, and res-
idues 143–148. Compounds that optimize interactions in
these subsites, in addition to the covalent interaction
with ser195 and the electrostatic interaction with asp
189, may very well advance both the potency and selec-
tivity of this compound series.
8. Ries, U. J.; Wienen, W. Drugs Future 2003, 28, 355.
9. Wang, X.; Cheng, Q.; Xu, L.; Feuerstein, G. Z.; Hsu, M.-
Y.; Smith, P. L.; Seiffert, D. A.; Schumacher, W. A.;
Ogletree, M. L. J. Thrombosis Haemostasis 2005, 3, 695.
10. (a) Weston, G. S.; Blazquez, J.; Baquero, F.; Shoichet, B.
K. J. Med. Chem. 1998, 41, 4577; (b) Wasserthal, P. S.;
Martichonok, V.; Keller, T. H.; Chin, B.; Martin, R.;
Jones, J. B. Bioorg. Med. Chem. Lett. 1994, 2, 35; (c)
Patent WO 92/19707 1992 to Procter and Gamble
Company, US.
11. (a) Deadman, J. J.; Spencer, J.; Greenidge, P. A.;
Goodwin, C. A.; Kakkar, V. V.; Scully, M. F. WO
2002057273 A1; (b) Spencer, J.; Burd, A. P.; Goodwin, C.
A.; Merette, S. A. M.; Scully, M. F.; Adatia, T.;
Deadman, J. J. Tetrahedron 2002, 58, 1551; (c) De
Nanteuil, G.; Gloanec, P.; Lila, C.; Portevin, B.; Verbeu-
ren, T.; Rupin, A.; Simonet, S. EP 792883 A1.
12. (a) Bukhtiyarova, M.; Rizzo, C. J.; Kettner, C. A.;
Korant, B. D.; Scarnati, H. T.; King, R. W. Antiviral
Chem. Chemother. 2002, 12, 367; (b) Jagannathan, S.;
Forsyth, T. P.; Kettner, C. A. J. Org. Chem. 2001, 66,
6375; (c) Stoll, V. S.; Eger, B. T.; Hynes, R. C.;
Martichonok, V.; Jones, J. B.; Pai, E. F. Biochemistry
1998, 37, 451; (d) Davis, J. H.; Agard, D. A.; Handel, T.
M.; Basus, V. J. J. Biomol. NMR 1997, 10, 21; (e) Amparo,
E. C.; Miller, W. H.; Pacofsky, G. J.; Wityak, J.; Weber, P.
C.; Duncia, J. J. V.; Santella, J. B., III. WO 9620689 A2;
(f) Pacofsky, G. J.; Pruitt, J. R.; Weber, P. C. WO 9509859
A1; (g) Tian, Z.-Q.; Brown, B. B.; Mack, D. P.; Hutton, C.
A.; Bartlett, P. A. J. Org. Chem. 1997, 62, 514; (h) Coutts,
S. J.; Kelly, T. A.; Snow, R. J.; Kennedy, C. A.; Barton, R.
W.; Adams, J.; Krolikowski, D. A.; Freeman, D. M.;
Cambell, S. J. J. Med. Chem. 1996, 39, 2087.
13. (a) Coburn, C. A. Expert Opin. Ther. Patents 2001, 11,
721; (b) Vacca, J. P. Curr. Opin. Chem. Biol. 2000, 9, 355;
(c) Kettner, C.; Mersinger, I.; Knobb, R. J. Biol. Chem.
1990, 265, 18289; (d) Tarrapelli, C.; Metternich, R.;
Ehrhardt, C. J. Biol. Chem. 1993, 268, 4734; (e) Weber,
P. C.; Lee, S. I.; Levandowski, F. A.; Schadt, M. C.;
Chang, C. W.; Kettner, C. A. Biochemistry 1995, 34,
3750.
In conclusion, we have synthesized single digit micromo-
lar aryl boronic acid inhibitors of FXIa with selectivity
against trypsin, thrombin, and FXa. X-ray studies of
the inhibitors with the catalytic domain of FXIa identi-
fied several subsites where additional interactions with
the enzyme may lead to the design of more potent and
selective compounds. Synthesis and biological evalua-
tion of second generation aryl boronic acid inhibitors
has been initiated.
References and notes
1. Ruef, J.; Katus, H. A. Expert Opin. Ther. Patents 2003, 12,
781.
2. Hirsh, J.; Fuster, V. Circulation 1994, 89, 1449.
3. (a) Coburn, C. A. Expert Opin. Ther. Patents 2001, 11, 1;
(b) Sanderson, P. E. J. Annu. Rep. Med. Chem. 2001, 36,
79; (c) Vacca, J. P. Annu. Rep. Med. Chem. 1998, 33, 81;
(d) Ilies, M. A.; Scozzafava, A.; Supuran, C. T. Expert
Opin. Ther. Patents 2002, 12, 1181.
4. (a) Rewinkel, J. B. M.; Adang, A. E. P. Curr. Pharm. Des.
1999, 5, 1043; (b) Steinmetzer, T.; Hauptmann, J.;
Sturzebecher, J. Expert Opin. Ther. Patents 2001, 11, 845.
14. Velcade is a trademark of Millenium Pharmaceuticals,
Inc. (a) Adams, J.; Kauffman, M. Cancer Invest. 2004,