A. M. Tamburro et al.
FULL PAPER
bandwidth. Buffer solution was recorded under the same condi-
tions and subtracted from the spectra before noise reduction.
Smooth noise reduction was applied. The data are expressed as
molar ellipticity [θ]M in deg cm2 dmol–1.
were harvested by fixation in 70 % ethanol at –20 °C.[27] The fixed
cells were incubated with murine monoclonal anti-BrdU (2
μg mL–1) overnight at 4 °C. Excess anti-BrdU was removed by
washing the coverslips in PBS containing 0.05 % Tween-20 (Sigma,
St. Louis, MO) (PBST). The cells were then incubated with Alexa-
488 conjugated goat anti-mouse secondary antibody (Molecular
Probes, Eugene, OR) for 4 hrs at 22 °C, washed with PBST and
counterstained for 10 min with propidium iodide (PI, 5 μg mL–1)
(Molecular Probes). The coverslips were protected with Permafluor
(Fisher Scientific, Tustin, CA), placed onto microscope slides and
dried flat in the dark, overnight.
Nuclear Magnetic Resonance Spectroscopy: All 1H NMR experi-
ments were performed on a Varian Unity INOVA 500 MHz spec-
trometer fitted with a 5 mm triple-resonance probe and z-axial gra-
dients. The purified peptide was dissolved in 700 μL of TFE-d3/
H2O (80:20), containing 0.1 mm of 3-(trimethylsilyl)propane-1-sul-
fonic acid (DSS) as internal reference standard at 0 ppm; 1.5 mm
1
peptide solutions were used. One-dimensional H spectra were ac-
quired with 32 K datapoints with a sweepwidth of 6000 Hz. The
residual HDO signal was suppressed by presaturation during the
relaxation period. TOCSY[14] spectra were collected using 256 t1
increments and a spectral width of 6000 Hz in both dimensions.
Relaxation delays were set to 2.5 s and spinlock (MLEV-17) mixing
time was 80 ms. Shifted sine bell squared weighting and zero filling
to 2 K×2 K were applied before Fourier transformation. NOESY
data were collected in essentially the same manner as for TOCSY
data, with mixing times ranging from 200 to 400 ms. The residual
HDO signal was suppressed by presaturation during relaxation
time for TOCSY experiments, while for NOESY experiments
Watergate pulse sequence were performed prior to acquisition.[25]
Amide proton temperature coefficients were measured from 1D 1H
NMR spectra recorded in 5 K increments from 278 K to 318 K.
Spectra were processed and analysed by VNMR Ver. 6.1C software
(Varian, Palo Alto, CA).
FITC-labelled BrdU incorporation was quantified in replicate sam-
ples by use of a laser scanning cytometer (LSC) (CompuCyte,
Cambridge MA)[27] The LSC is a microscope-based flow cytometer.
Green fluorescent intensity reflected a quantitative measure of
cellular activation as increased BrdU incorporation into S phase
DNA in treated cells relative to control cells. To confirm the gating
parameters, cells in selected gates were visually inspected through
the CCD camera attached to the microscope. Optimized protocol
and display settings were stored as configuration files and utilized
for all samples within a given experimental set. An average of 5
000 500 cells were scanned per treatment or condition.
Acknowledgments
This work was funded in part by grants from Connective Tissue
Imagineering, Visalia, California, from the European Community
(QLK6–2001–00332), and from the MIUR (COFIN 2002).
Structure Calculation: Experimentally measured NOE intensities
were converted into proton–proton distance constraints classified
into three ranges: 1.8–2.7 Å, 1.8–3.3 Å and 1.8–5.0 Å, correspond-
ing to strong, medium and weak NOEs, respectively. Pseudoatoms
were introduced when no stereospecific assignment was deter-
mined, and interproton distances were corrected accordingly.[26]
The two coupling constant of V2 and Q4, extracted from the 1D
1H NMR spectrum, were used as angle constraints. The structures
were calculated with the aid of the CYANA 1.0 program,[17] by
use of a standard simulated annealing procedure. From an initial
ensemble of 50 structures the best 10, in terms of target function
values and residual distance restraint violations, were chosen to
represent the conformations of the peptide. The resulting structures
were analysed with the MOLMOL graphics program,[19] which was
also used to produce the molecular model.
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FTIR Spectroscopy: Infrared spectra at a resolution of 2 cm–1 were
obtained in TFE solution with a Jasco FTIR spectrometer with a
0.025 cm cell with CaF2 windows. The sample concentration was
50 mg mL–1. The solvent spectrum obtained under identical condi-
tions was subtracted from the sample spectrum. The amide I region
of the spectra was decomposed into component bands by use of
the software Grams/32® (Version 4.11 Level II Galactic Industries
Corporation). The ratio between Lorentzian and Gaussian func-
tions was fixed to the 2:8 ratio.
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HEP-Induced Cellular Activity (Bromodeoxyuridine Incorporation
Assay): Normal human dermal fibroblasts were purchased from
Clonetics (BioWhittaker, Inc., Walkersville, MD) and maintained
according to the specifications provided. The cells were growth ex-
panded and samples were stored frozen in liquid nitrogen; cells
were not utilized in experiments past passage 5. NHDFs were es-
tablished in 6-well plates with 25 mm round glass coverslips and
treated with 3 mm BrdU added simultaneously with 10 μg mL–1 of
a total mixture of hydrolysed elastin peptides (HEP), 10 μg mL–1
Val-Val-Pro-Gln, PBS (negative control) or BrdU only (basal level
of incorporation). The treated cells were incubated for 3 hours and
[14] K. Wüthrich, NMR of Proteins and Nucleic Acids, 1986, Wiley,
New York.
[15] A. Bax, D. G. Davis, J. Magn. Reson., Ser. B 1985, 65, 355–
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[17] P. Güntert, M. Mumenthaler, K. Wüthrich, J. Mol. Biol. 1997,
273, 283–298.
[18] M. Karplus, J. Chem. Phys. 1959, 30, 11–15.
[19] R. Koradi, M. Billeter, K. Wüthrich, J. Mol. Graph. 1996, 14,
51–55.
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