Ribofuranosyl Triazolone Herbicide
J ournal of Natural Products, 2000, Vol. 63, No. 6 779
g), and hexaglycerol dioleate (15.0 g),per liter of deionized H2O,
and incubated for 8 days at 28-30 °C with shaking at 195
rpm. After 8 days, the culture was harvested and processed
as described below.
values of 0.18 µM and 0.98 µM for rabbit-muscle AdSS and
maize cell culture AdSS, respectively (Figure 2).
Ribofuranosyl triazolone (2) could represent an impor-
tant new lead for herbicide discovery. Its synthetic ap-
proachability and apparent overlap with the structure-
activity relationships governing hydantocidin (1) suggest
opportunities for further optimization/hybridization of
these structures. It is the second reported compound that
must be bioactivated by phosphorylation in order to inhibit
the activity of AdSS. Compound 2 is a new natural-product
phytotoxin that is herbicidal via inhibition of AdSS, a target
site not represented among commercial herbicides today.
Isola t ion a n d Id en t ifica t ion of R ib ofu r a n osyl Tr i-
a zolon e (2). The material from two 13.5-mL fermentations
were combined, centrifuged at 10000g for 30 min, and the
supernatant transferred to a 100-mL separating funnel. The
supernatant was extracted three times with an equal volume
of n-BuOH, and the combined extracts were evaporated in
vacuo. Compound 2 was isolated by liquid chromatography
(Hypercarb S graphite) using 5% aqueous acetonitrile contain-
ing 0.05% trifluoroacetic acid, to give an off-white solid (ca.
0.5 mg). Two separate chromatography runs were required to
isolate 2 at >98% purity: colorless solid; 1H NMR (D2O) δ 7.9
(1H, s, H-2), 5.4 (1H, d, H-1′), 4.4 (1H, dd, H-2′), 4.2 (1H, dd,
H-3′), 4.0 (1H, ddd, H-4′), 3.7 (H, dd, H-5′a), 3.6 (1H, dd, H-5′b);
13C NMR (D2O) δ 136 (d, C-2), 86 (d, C-1′), 85 (d, C-4′), 73 (d,
C-2′), 70 (d, C-3′), 61 (d, C-5′); positive ion ESIMS m/z 218 [M
+ H]+; negative ion ESIMS m/z 216 [M - H]- 276 [M + acetate
- H]-.
Syn th esis of Ribofu r a n osyl Tr ia zolon e (2) a n d th e
Cor r esp on d in g P h osp h or ibofu r a n osyl Tr ia zolon e. Struc-
ture confirmation was achieved by independent synthesis of
2 following the method of Haines et al.18 (see Schemes 1 and
2, Supporting Information). Experimental variations are noted
below.
4-Im id a zolin -2-on e. Semicarbazide hydrochloride (10 g)
was refluxed in an excess of triethyl orthoformate (100 mL)
for 2 h. The resultant homogeneous solution was concentrated
in vacuo to give the desired product, which was used without
any further purification.
1-(Tr im eth ylsilyl)-2-[(tr im eth ylsilyl)oxy]im idazole. The
reaction was run on 4-imidazolin-2-one prepared above as
described by Haines et al.18 After the solvent was removed in
vacuo, the residue was sublimed at 60 °C, 0.01 mmHg, to give
the title compound as a white solid.
1-(2,3,5-Tr i-O-b en zoyl-â-D-r ib ofu r a n oyl)-4-t r ia zol-3-
on e. According to the published procedure,18 tin tetrachloride
was added last over 1 h to a mixture of imidazole and
ribofuranose at 0 °C. After 3 h of stirring at 0 °C, the aqueous
workup was performed as described. Reversed-phase gradient
HPLC (C18 fully end-capped ODS) using H2O and acetonitrile
containing 0.05% trifluoroacetic acid, gave five products that
were identified by NMR analysis as alkylation on N5 (5%),
alkylation on N2 (30%), acylated N2 derivative (15%), the
ribose starting material (15%), and bis-ribosylated material
(35%).
Depr otection of O-Ben zoylated Ribon u cleosides. Depro-
tection of both the second and third products by the published
procedure of Haines et al.18 yielded 2, which was identical in
all respects to the material produced by fermentation.
P h osp h or yla tion of 2. To a solution of 2 (8.1 mg, 0.04
mmol) in DMF (125 µL) and THF (1.25 mL) was added
tetrazole (7 mg, 0.085 mmol) and dibenzyl diethyl phosphora-
midite (32 µL, 0.1 mmol). The reaction was stirred for 4 h and
quenched with oxone (93 mg, 0.15 mmol) in H2O (1 mL). The
reaction was stirred for an additional 30 min and partitioned
between EtOAc and H2O. The organic fraction was evaporated
and the residue purified by reversed-phase gradient HPLC
(C18), using H2O and acetonitrile containing 0.05% trifluoro-
acetic acid, to produce the protected phosphate derivative (2
mg, 10%); ESIMS, m/z 477.
The protected phosphate (2 mg) was dissolved in EtOH (1.5
mL) and cyclohexene (2.5 mL). After addition of palladium-
on-carbon catalyst (1 mg), the reaction was heated to reflux
for 5 h. The reaction was filtered, evaporated, and chromato-
graphed by reversed-phase HPLC as described above to
produce the desired phosphorylated ribofuranosyl triazolone
(ca. 1.0 mg, 76%); ESIMS, m/z 297.
Exp er im en ta l Section
Gen er a l Exp er im en ta l P r oced u r es. NMR spectra were
recorded on a Bruker DRX400 spectrometer, operating at
400.13 MHz (1H) and 100.62 MHz (13C), and equipped with
either a 3-mm micro inverse probe or a 3-mm micro dual probe
(Nalorac). Samples were dissolved in 140 µL of D2O. All spectra
were referenced to the residual proton solvent resonance at
4.7 ppm. Carbon data were externally referenced to sodium
3-trimethylsilylpropionate. LC/MS analyses were conducted
using a Hewlett-Packard 1050 HPLC coupled to a Finnigan
LCQ mass spectrometer. Mass spectra were obtained using
both electrospray ionization (ESI) and atmospheric pressure
chemical ionization (APCI).
Id en tifica tion of Or ga n ism by DNA Sequ en cin g. DNA
was isolated from 0.25 mL of liquid vegetative culture using
the QIAamp Tissue Kit (Quiagen, Valencia, CA) and eluted
in a final volume of 400 µL. The 16s rRNA gene was amplified
by PCR using a Gene Amp Kit (PE Applied BioSystems, Foster
City, CA). Each 100-µL reaction contained 10 µL of the
bacterial DNA and 20 pmol each of the 16s sense (5′>AGAGTT-
TGATCCTGGCTCAG<3′) and 16s anti-sense (5′>AAGGAG-
GTGATCCAGCCGCA<3′) primers. Amplification was carried
out in a DNA Thermal Cycler 480 (PE Applied Biosystems),
after a 5-min soak at 94 °C, 25 cycles of 94 °C for 1 min, 50 °C
for 1 min, and 72 °C for 3 min, followed by a 7-min extension
at 72 °C. The reaction product was purified using Quiagen’s
QIAquick Kit and eluted in 30 µL of H2O. DNA-sequencing
reactions were carried out using a Perkin-Elmer ABI PRISM
Dye Terminator Ready Reaction Kit supplemented with 10%
DMSO. The eluted PCR product (1 µL) was sequenced in a
20-µL reaction using 1 pmol of the 519 primer (5′>GWAT-
TACCGCGGCKGCTG<3′). Unincorporated nucleotides were
removed using Centriflex Gel Filtration Cartridges (Edge
BioSystems, Inc., Gaithersburg, MD) and then analyzed on
an Applied Biosystems 373A DNA sequencer.
The resulting sequence was compared with the public
database at the National Center for Biotechnology Information
using the search tool BLAST 2.0 (Washington, DC). The query
sequence consisted of 357 bases. There was no identical
sequence in the public database (Genbank Database, May
1998). However, it was similar to members of the genus
Actinomadura (98% identity). Within the Actinomadura, the
sequence most closely matched A. madurae (Vincent 1894)
Lechevalier and Lechevalier 1970 (349 out of 357 bases).
Cu ltu r e a n d F er m en ta tion of Or ga n ism . The culture
(M05053-G8) was isolated from a soil sample according to
standard methods19 and deposited at Dow AgroSciences (9330
Zionsville Road, Indianapolis, IN 46268). The culture was
fermented for 72 h in a vegetative medium (50 mL) containing
glucose (5.0 g), yeast extract (Difco, 2.5 g), soluble starch (10.0
g), N-Z Amine (casein, 2.5 g), and CaCO3 (0.5 g) per liter of
deionized H2O. Incubation was maintained at 28-30 °C with
shaking at 195 rpm for 3 days. This seed inoculum (30 µL)
was then added to small rectangular bottles with vented cap
closures each containing 14 mL of production medium. The
production medium was composed of corn steep powder (5.0
g), dextrose (5 g), lactose (50 g), CaCO3 (3 g), soybean flour
nutrisoy (10 g), bacto peptone (5 g), NH4SO4 (2 g), FeCl2‚4H2O
(0.1 g), ZnCl2 (0.1 g), MnCl2‚4H2O (0.1 g), MgSO4‚7H2O (0.5
Eva lu a tion of Her bicid a l Activity. Whole plant activity
was assessed on several plant species using foliar-applied
(postemergence) and soil-applied (preemergence) applications.
Seeds of sunflower (Helianthus annuus, HELAN), morning-
glory (Ipomoea hederacea, IPOHE), velvetleaf (Abutilon theo-