Convenient synthesis of 5,7-dichlorothiazolo[5,4-d]pyrimidine

Article abstract of DOI:10.3987/COM-12-12499

A convenient synthesis of 5,7-dichlorothiazolo[5,4-d]pyrimidine is reported. The condensation of ethyl isocyanoacetate and ethoxycarbonyl isothiocyanate selectively gave the key 5-aminothiazole intermediate in high yield under mild conditions. This interm

Full text of DOI:10.3987/COM-12-12499

HETEROCYCLES, Vol. 85, No. 7, 2012
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HETEROCYCLES, Vol. 85, No. 7, 2012, pp. 1721 - 1726. © 2012 The Japan Institute of Heterocyclic Chemistry
Received, 27th April, 2012, Accepted, 23rd May, 2012, Published online, 1st June, 2012
DOI: 10.3987/COM-12-12499
CONVENIENT SYNTHESIS OF
5,7-DICHLOROTHIAZOLO[5,4-d]PYRIMIDINE
Lianhe Shu,* Lady Mae Alabanza, and Chen Gu
Process Research and Synthesis, Pharma Research and Early Development
(pRED), Hoffmann-La Roche Inc., 340 Kingsland Street, Nutley, NJ 07110, USA;
E-mail: lianhe.shu@roche.com
Abstract – A convenient synthesis of 5,7-dichlorothiazolo[5,4-d]pyrimidine is
reported. The condensation of ethyl isocyanoacetate and ethoxycarbonyl
isothiocyanate selectively gave the key 5-aminothiazole intermediate in high yield
under mild conditions. This intermediate was then converted to the target product
in three steps.
Heterocyclic compounds have been widely used in the pharmaceutical industry. Recently, a drug
discovery program at Roche required heterocyclic building block,
a
5,7-dichlorothiazolo[5,4-d]pyrimidine (4). While this compound is available from multiple vendors
around the world, it is very expensive and the limited stocks could not fulfill our immediate needs. An
in-house campaign of this compound was thus pursued. Though the synthesis of 4 is known in the
literature (Scheme 1),1-3 and uric acid (1) is readily available, the conversion of 1 to 2 requires quite harsh
conditions.1 In addition, the use of ammonium sulfide is clearly undesirable for large scale preparations.
Alternatively, the 5-aminothiazole precursor 8 can be prepared in several steps from 5 according to the
literature (Scheme 2);4-7 however, these routes are also not suitable for scale-up due to the use of
hydrogen sulfide or Lawesson's reagent, and low overall yield. Herein, we describe a convenient, 4-step
synthesis of 4 from readily available starting materials.
O
O
O
Cl
H
N
(NH4)2S, KOH
H2N
HS
HCO2H
POCl3
NH
N
S
N
S
NH
NH
N
O
H2O, 175°C
64%
reflux
85%
N
H
200 °C
12%
N
H
O
N
H
O
N
H
O
N
Cl
1
2
3
4
Scheme 1

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HETEROCYCLES, Vol. 85, No. 7, 2012
COR
H
N
H2S or
Lawesson's reagent
O
CN
or
COR
NHR'
COR
N
S
8
6
CN
EtO
COR
N
5
R = OEt, NH2
R' = H, Ac
CN
7
Scheme 2
The reaction of isocyanoacetate with isothiocyanate (Scheme 3) is of particular interest to us, as it
provides an easy access to the key precursor 11. However, reactions of 9 with 10 (R = alkyl or aryl) were
reported to give 11 in only moderate yield.8,9 A detailed study on the effect of temperature, solvent, base,
and mode of addition by Solomon et al. revealed a significant competing pathway leading to the
formation of imidazole 12 along with its dimerization product 13.9 This is consistent with our initial
observation that the reaction of t-butyl isothiocyanate (10, R = t-Bu) at room temperature in the presence
of potassium t-butoxide in THF gave essentially a 1 : 1 mixture of 11 : 12, together with minor dimeric
impurities. When benzyl isothiocyanate (10, R = Bn) was used, 11 became the major product. However,
the product isolated was contaminated with unidentified impurities. Subsequently, the selectivity towards
the desired thiazole was significantly improved by using a more electron deficient substrate,
ethoxycarbonyl isothiocyanate (15). When the temperature was maintained between -25 and 0 °C, the
reaction of 14 with 15 gave exclusively 16, with no other isomers detected by LCMS analysis (Scheme
4).10
CO2Me
R
N
CO2Me
SH
CO2Me
NHR
N
N
base
N
S
S
C
N+ CO2Me +
N
S
N
R
S
N
solvent
N
R
R
MeO2C
13
9
10
R = alkyl, aryl
11
12
Scheme 3
Thus, 14 was added dropwise to a solution of potassium t-butoxide in THF maintained below -25 °C. The
resulting enolate solution was stirred at this temperature for additional 10 min, then compound 15 was
added dropwise while keeping the temperature below -20 °C. The reaction mixture was allowed to warm
to 0 °C and quenched with acetic acid. After extractive work up with isopropyl acetate, concentration
gave 16 in 92% yield as a light brown solid, which was directly used in the next step.

HETEROCYCLES, Vol. 85, No. 7, 2012
1723
CO2Et
CO2Et
N
t-BuOK
NH4OH
O
C
N+ CO2Et
+
S
S
N
N
OEt
THF
-25-0 °C
40 °C
74%
H
15
16
14
92%
O
Cl
N
CONH2
N
POCl3/DIPEA
reflux
t-BuOK
N
S
NH
N
S
CO2Et
S
N
H
DMA
100 °C
N
O
N
Cl
H
98%
86%
17
3
4
Scheme 4
Ethyl ester 16 can be directly converted to the corresponding amide 17 by aminolysis with ammonium
hydroxide. Compound 16 was dissolved in aqueous ethanol at 40 °C. Then, ammonium hydroxide was
added and the resulting suspension was stirred at 40 °C overnight to achieve complete conversion. When
run at room temperature, the reaction took 4 days to complete. The resulting suspension was diluted with
water and 17 was isolated by filtration as a white solid in 74% yield.
While the conversion of 17 to 3 could be achieved by a 2-step sequence, hydrolysis of the ethyl carbamate
followed by cyclization with phosgene or its derivatives, the direct cyclization of 17 is more desirable in
terms of efficiency and atom economy. It has previously been described4 that 17 decomposes at
245-250 °C to give 3, though no yield was reported. Such a high temperature step, however, is not
considered practical for preparative purposes. The direct cyclization was initially tested in alcoholic
solvents with acid additives, such as p-toluenesulfonic acid and sulfuric acid. No reaction was observed at
reaction temperatures up to 120 °C. Treatment with bases, such as pyridine, N,N-diisopropylethylamine,
DBU, and potassium hydroxide, at elevated temperature also did not induce any desired reaction.
Subsequently, a clean cyclization was achieved within one hour by heating a mixture of 17 with
potassium t-butoxide at 100 °C in N,N-dimethylacetamide (DMA) or N-methylpyrrolidinone (NMP).
Sodium t-butoxide can also be used though the reaction was slower. After neutralization with acetic acid
and dilution with water, the resulting solid was collected by filtration and dried under vacuum at 80 °C to
give 3 in 98% yield.
For the final step, conversion of 3 to 4, two conditions have been reported in the literature. In an early
example 4 was isolated in 12% yield after heating 3 with phosphoryl chloride at 200 °C for 12 hours.2
Hancox et al. reported the reaction at 80 °C, however, no detailed procedure and yield were provided.3
Subsequently, we found that in the presence of N,N-diisopropylethylamine the reaction proceeded under
relatively milder conditions and the yield was significantly improved. Thus, 3 was treated with

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phosphoryl chloride in the presence of N,N-diisopropylethylamine at 110 °C for 30 hours. The reaction
mixture was then concentrated under reduced pressure to remove excess phosphoryl chloride. After
aqueous work up, the product was precipitated from isopropyl acetate-heptane, and was isolated as a
brown solid in 86% yield and greater than 99% purity.
In summary, we report an efficient synthesis of 5,7-dichlorothiazolo[5,4-d]pyrimidine under relatively
mild conditions from readily available starting materials. This 4-step synthesis, which has been scaled up
to a 100 gram scale, gave this versatile building block in 57% overall yield.
EXPERIMENTAL
Ethyl 5-(ethoxycarbonylamino)thiazole-4-carboxylate (16) A 500 mL round-bottomed flask equipped
with a magnetic stirrer, thermocouple probe and N2 bubbler was charged with 1 M potassium t-butoxide
in THF (180 mL, 180 mmol). The contents of the flask were cooled with a dry-ice acetone bath to below
-25 °C, then 14 (18.0 g, 159 mmol) was added over 5 min while maintaining the internal temperature
below -25 °C. After stirring at this temperature for 10 min, 15 (21.0 g, 160 mmol) was added dropwise
over 10 min, while maintaining the internal temperature below -20 °C. After the addition was complete,
the mixture was stirred for 10 min, then warmed to 0 °C over 30 min. The reaction was then quenched
with acetic acid (10.5 mL, 183 mmol), diluted with water (90 mL), and concentrated under reduced
pressure to remove THF. The residue was extracted with isopropyl acetate (180 mL). The organic layer
was washed with water (2 × 90 mL), and concentrated under reduced pressure to give 16 (35.9 g, 92%
1
yield) as a brown oil, which solidified upon standing at room temperature. H NMR (300 MHz,
DMSO-d6) δ 10.01 (s, 1H), 8.59 (s, 1H), 4.33 (q, J = 7.1 Hz, 2H), 4.25 (q, J = 7.1 Hz, 2H), 1.31 (t, J =7.1
13
Hz, 3H), 1.27 (t, J = 7.1 Hz, 3H); C NMR (100 MHz, DMSO-d6) δ 163.72, 152.56, 146.49, 145.08,
126.76, 62.71, 60.80, 14.14, 14.10; HRMS m/z calcd. for C9H12N2O4S+H 245.0591, found 245.0591.
(4-Carbamoylthiazol-5-yl)carbamic acid ethyl ester (17)4 A 250 mL round-bottomed flask equipped
with a magnetic stirrer, heating mantle and condenser was charged with 16 (18.0 g, 73.7 mmol) and
ethanol (18 mL). The suspension was stirred at 40 °C until all the solids had dissolved. The resulting
solution was diluted with water (36 mL), then ammonium hydroxide (72 mL, 1.85 mol) was added. The
mixture was stirred at 40 °C overnight, then diluted with water (72 mL) and heated under gentle reflux for
30 min. After cooling to room temperature, the resulting solid was collected by filtration, washed with
water (2 × 72 mL) and dried at 80 °C under vacuum overnight to give 17 (11.7 g, 74% yield) as a white
solid. mp 244.0 °C (decomp);4 1H NMR (300 MHz, DMSO-d6) δ 10.88 (s, 1H), 8.58 (s, 1H), 7.88 (s, 1H),
7.78 (s, 1H), 4.23 (q, J = 7.1 Hz, 2H), 1.26 (t, J = 7.1 Hz, 3H); 13C NMR (100 MHz, DMSO-d6) δ 165.98,
125.50, 144.22, 142.71, 128.87, 62.41, 14.18; HRMS m/z calcd. for C7H9N3O3S+H 216.0440, found
216.0437.

HETEROCYCLES, Vol. 85, No. 7, 2012
1725
4H-Thiazolo[5,4-d]pyrimidine-5,7-dione (3)4 A 500 mL round-bottomed flask equipped with a
magnetic stirrer, heating mantle and N2 bubbler was charged with potassium t-butoxide (14.7 g, 131
mmol) and N,N-dimethylacetamide (176 mL). Then, 17 (11.0 g, 51.1 mmol) was added. After stirring at
100 °C for 1 h, the reaction mixture was diluted with water (176 mL) and acidified with acetic acid (8.80
mL, 154 mmol). The resulting mixture was stirred at 100 °C for an additional 1 h, cooled to room
temperature and filtered. The collected solids were washed with water (66 mL) and dried by suction, then
at 80 °C under vacuum overnight to give 3 (8.50 g, 98% yield) as a white solid. mp > 360 °C;2 1H NMR
13
(300 MHz, DMSO-d6) δ 11.99 (brs, 1H), 11.31 (s, 1H), 8.72 (s, 1H); C NMR (100 MHz, DMSO-d6) δ
157.69, 150.33, 149.90, 146.08, 130.16; HRMS m/z calcd. for C5H3N3O2S+H 170.0021, found
170.0019.
5,7-Dichlorothiazolo[5,4-d]pyrimidine (4)2 A 250 mL round-bottomed flask equipped with a magnetic
stirrer, heating mantle, condenser and N2 bubbler was charged with 3 (11.0 g, 65.0 mmol),
N,N-diisopropylethylamine (33.0 mL, 189 mmol) and phosphoryl chloride (77.0 mL). The stirred
mixture was heated to reflux for 30 h, then concentrated under reduced pressure to remove excess
phosphoryl chloride. The oily residue was diluted with isopropyl acetate (110 mL) and ice-water (70 mL).
After stirring for 10 min, the organic phase was separated, and the aqueous layer was extracted with
isopropyl acetate (110 mL). The organic layers were combined, washed with water (2 × 70 mL) and
filtered through a pad of Celite® to remove insolubles. The resulting solution was concentrated to ca. 50
mL, then diluted with n-heptane (132 mL). The suspension was further concentrated to ca. 50 mL and
cooled to room temperature. The resulting solid was collected by filtration and washed with n-heptane (30
mL) to give 4 (11.5 g, 86% yield) as a brown solid. mp 145.0-146.5 °C;2 1H NMR (300 MHz,
DMSO-d6) δ 9.69 (s, 1H); 13C NMR (100 MHz, CDCl3) δ 166.81, 156.49, 155.77, 155.36, 140.95; HRMS
m/z calcd. for C5HCl2N3S+H 205.9343, found 205.9341.
ACKNOWLEDGEMENTS
We would like to thank Ms. Amy Hilderbrand of the Formulation Research Department for HRMS
analysis.
REFERENCES AND NOTES
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2. S. J. Childress and R. L. McKee, J. Am. Chem. Soc., 1951, 73, 3862.
3. T. C. Hancox, N. A. Pegg, M. C. Beswick, T. J. Blench, E. A. Dechaux, J. J. Kulagowski, A. J.
Nadin, and S. Price, PCT Int. Appl., 2008152390, 18 Dec 2008.
4. M. Sekiya and Y. Osaki, Chem. Pharm. Bull., 1965, 13, 1319.

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5. Y. Tamura, T. Miyamoto, K. Shimooka, and T. Masui, Chem. Pharm. Bull., 1971, 19, 119.
6. A. K. Sen and G. Chattopadhyay, Indian J. Chem., 1979, 17B, 222.
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8. M. Suzuki, T. Moriya, K. Matsumoto, and M. Miyoshi, Synthesis, 1982, 874.
9. D. M. Solomon, R. K. Rizvi, and J. J. Kaminski, Heterocycles, 1987, 26, 651.
10. While the high selectivity may partially be attributed to the lower reaction temperature, we believe
the ethoxycarbonyl group is crucial as it helps to localize the negative charge on sulfur atom thus
favors the thiazole formation.
K+
N
O
K+
O
S
C
N
EtO
HS
C
N
EtO
N
H
CO2Et
CO2Et
favored
disfavored