Novel Isosteric Analogues of Thalidomide
J ournal of Medicinal Chemistry, 2003, Vol. 46, No. 24 5227
d ith ioxo-2H-isoin d ol-2-yl)p en ta n ed ioa te (9). A mixture of
compound 7 (144 mg, 0.47 mmol) and LR (191 mg, 0.47 mmol)
in toluene was stirred in a 110 °C oil bath for 10 h. The solvent
was then evaporated, and the residue was purified by column
chromatography (silica gel) using CH2Cl2 as the eluent, to
obtain compound 9 (17 mg, 11%) as a dark red oil. Thereafter,
using CH2Cl2:EtOAc (10:1) as the eluent the more polar
component 8 (105 mg, 70%) was obtained as a red oil.
Compound 8: 1H NMR (CDCl3) δ 7.98-7.96 (m, 1H), 7.81-
7.70 (m, 3H), 5.53 (dd, J ) 5.1 Hz, J ) 10 Hz, 1H), 3.70 (s,
3H), 3.59 (s, 3H), 2.76-2.56 (m, 2H), 2.40-2.33 (m, 2H); MS
(CI/CH4) m/z 321 (M+).
Compound 9: 1H NMR (CDCl3) δ 7.87-7.84 (m, 2H), 7.73-
7.68 (m. 2H), 6.09 (dd, J ) 5 Hz, J ) 10 Hz, 1H), 3.70 (s, 3H),
3.58 (s, 3H), 2.81-2.63 (m, 2H), 2.40-2.24 (m, 2H); MS (DEI)
m/z 337 (M+); HRMS (DEI) calcd for C15H15NO4S2 337.0442
(M+), found 337.0449.
occurred via its 3′-UTR. Like thalidomide 1, 15, and 16
effectively inhibited angiogenesis, whereas the potent
TNF-R inhibitor, dithioglutarimide 19, was inactive in
angiogenesis assays (data not shown); suggesting that
different structure/activity relations are responsible for
these pharmacological actions. TNF-R has been vali-
dated as a drug target with Remicade (Cetocor, Malvern,
PA; Schering-Plough, Orange, NJ ) and Enbrel (Amgen,
Thousand Oaks, CA; Wyeth-Ayerst, Princeton, NJ ) on
the market; however, both are large macromolecules
and hence require injection. The development of small,
druglike molecules to potently and safely inhibit TNF-R
likely will be of significant clinical value.
Exp er im en ta l Section
Gen er a l. Melting points were determined with a Fisher-
J ohns apparatus and are uncorrected. 1H NMR, 13C NMR, and
2D NMR were recorded on a Bruker AC-300 spectrometer.
Mass spectra and high-resolution mass spectra (HRMS) were
recorded on a VG 7070 mass spectrometer and a Agilent
Technologies 5973N GC-MS (CI). All exact mass measure-
ments show an error of less than 5 ppm. Elemental analyses
were performed by Atlantic Microlab, Inc., Norcross, GA.
3-(ter t-Bu toxyca r bon yla m in o)-2,6-p ip er id in ed ion e (3).
A mixture of N-(tert-butoxycarbonyl)-L-glutamine (4.92 g, 20
mmol) and carbonyl diimidazole (3.24 g, 20 mmol) in THF (100
mL) was refluxed for 16 h. Thereafter, solvent was removed,
and the crude product was recrystallized from hot EtOAc to
give compound 3 (2.04 g, 45%) as white crystals: mp 214-
2-(1,3-Dih yd r o-1-oxo-3-t h ioxo-2H -isoin d ol-2-yl)p e n -
ta n ed ioic Acid (11). Compound 8 (350 mg, 1.09 mmol) was
stirred with a 1:1 mixture of acetic acid glacial and concen-
trated HCl in a 100 °C oil bath for 2.5 h. Ethyl acetate (100
mL) and ice-water (30 mL) was added. The ethyl acetate layer
was separated, washed with ice-water, dried over Na2SO4,
and concentrated. The resulting syrup was crystallized with
ether to afford compound 11 as red crystals (253 mg, 79%);
1
mp 157 °C; H NMR (DMSO-d6) δ 8.04-7.96 (m, 1H), 7.91-
7.74 (m, 3H), 5.43 (dd, J ) 5.1 Hz, J ) 9.6 Hz, 1H), 2.42-2.33
(m, 2H), 2.30-2.26 (m, 2H); MS (DEI) m/z 293 (M+); HRMS
(DEI) calcd for C13H11NO5S 293.0358 (M+), found 293.0363;
Anal. (C13H11NO5S) H, N; C: calcd, 53.24; found, 53.88.
2,3-Dih yd r o-3-t h ioxo-2-(2,6-d ioxo-3-p ip er id in yl)-1H -
isoin d ol-1-on e (12). A mixture of compound 8 (81 mg, 0.276
mmol), trifluoroacetamide (57 mg, 0.50 mmol), 1-hydroxyben-
zotriazole (145 mg, 1.07 mmol), 1-[3-(dimethylamino)propyl]-
3-ethylcarbodiimide hydrochloride (200 mg, 1.04 mmol), and
triethylamine (0.21 mL, 1.51 mmol) in CH2Cl2 (1.5 mL) was
stirred at ambient temperature for 3 days. Water (10 mL) and
CH2Cl2 (10 mL) were added. The dichloromethane layer was
separated, washed with water, dried over Na2SO4, and evapo-
rated under reduced pressure. Purification by chromatography,
with EtOAc:CH2Cl2 (1:10) as the eluent, gave compound 12
1
215 °C; H NMR (DMSO-d6) δ 4.22 (dd, J ) 6.2 Hz, J ) 11.0
Hz, 1H), 2.77-2.65 (m, 1H), 2.45 (m, 1 H), 1.96-1.87 (m, 2H),
1.40 (s, 9H); MS (CI/CH4) m/z 227 [M - 1]+.
2-(2-Oxo-6-th ioxo-3-p ip er id in yl)-1H-isoin d ole-1,3(2H)-
d ion e (5). Compound 3 (1.14 g, 5 mmol) was suspended in
CH2Cl2 (100 mL). To the mixture was added CF3COOH (10
mL), and this then was stirred at room temperature for 4 h.
The solvent was evaporated to give crude 4 (1.25 g): 1H NMR
(DMSO-d6) δ 11.42 (s, 1H), 8.70 (br, 2H), 4.31 (dd, J ) 5.4 Hz,
J ) 13 Hz), 2.88-2.72 (m, 2H), 2.25-2.09 (m, 2H). A mixture
of crude 4 (1.25 g), phthalic anhydride (0.89 g, 6 mmol), and
Et3N (1.39 mL, 10 mmol) in THF (150 mL) was refluxed for 2
days. The reaction mixture was concentrated, and the residue
was crystallized from ethyl acetate to give thalidomide (1) (0.89
g, 69%) as white crystals; mp 276 °C (lit. 276-279 °C). The
mixture of thalidomide 1 (258 mg, 1 mmol) and Lawesson’s
reagent (222 mg, 0.55 mmol) in toluene (50 mL) was stirred
at reflux for 12 h; thereafter, solvent was removed under
vacuum. The resulting residue was purified by column chro-
matography using CH2Cl2 as the eluent to afford compound 5
(200 mg, 73%) as a yellow solid: mp 225-226 °C; 1H NMR
(DMSO-d6) δ 12.83 (s, 1H, NH), 8.00-7.92 (m, 4H, Ph), 5.32
(dd, J ) 5.6 Hz, J ) 12.9 Hz, 1H, H-3′), 3.28-3.25 (m, 2H,
H-5′), 2.60-2.54 (m, 1H, H-4′), 2.17-2.10 (m, 1H, H-4′); 13C
NMR (DMSO-d6) δ 208.7(C-6′), 165.3(C-2′), 165.2(C-1 and C-3),
133.1(C-5 and C-6), 129.3 (C-3a, C-7a), 121.7 (C-4 and C-7),
46.9 (C-3′), 38.9 (C-5′), 21.79 (C-4′); MS (CI/CH4) m/z 274 (M+);
Anal. (C13H10N2O3S) C, H, N.
1
(48 mg, 63%) as a red solid: mp 255 °C; H NMR (CDCl3) δ
8.00-7.98 (m, 1H), 7.80-7.71 (m, 3H), 5.63 (br, 1H), 2.98-
2.70 (m, 3H), 2.18-2.15 (m, 1H); MS (CI/CH4) m/z 274 (M+);
Anal. (C13H10N2O3S) C, H, N.
2-(2, 6-Dith ioxo-3-p ip er id in yl)-1H-isoin d ole-1,3(2H)-d i-
on e (13) a n d 2,3-Dih yd r o-3-th ioxo-2-(2-oxo-6-th ioxo-3-
p ip er id in yl)-1H-isoin d ol-1-on e (15). The mixture of 5 (146
mg, 0.533 mmol), LR (108 mg, 0.267 mmol), and pyridine (21
µL) in toluene was stirred at 110 °C under an atmosphere of
N2 for 12 h. Thereafter, additional LR (108 mg, 0.267 mmol)
and pyridine (21 µL) were added, and the reaction mixture
was stirred for a further 12 h. The solvent was removed under
vacuum, and the residue was purified by column chromatog-
raphy with CH2Cl2:petroleum ether (2:1, 10:1) and then CH2-
Cl2:EtOAc (10:1) as eluents to afford 13 (30 mg, 45%), 15 (21
mg, 31.5%), and starting material 5 (83 mg).
Compound 13 (yellow solid): mp 263-265 °C; 1H NMR
(CDCl3) δ 7.78-7.74 (m, 2 H), 7.66-7.63 (m, 2 H), 5.00 (dd, J
) 4.9 Hz, 11.9 Hz, 1 H), 3.43-3.35 (m, 1 H), 2.95-2.84 (m, 2
H), 2.08-2.06 (m, 1 H); MS (DEI) m/z 290 (M+); HRMS (DEI)
calcd for C13H10N2O2S2 290.0184 (M+), found 290.0185; Anal.
(C13H10N2O2S2) C, H, N.
Dim et h yl 2-(1,3-d ih yd r o-1,3-d ioxo-2H -isoin d ol-2-yl)-
p en ta n ed ioa te (7). To a solution of N-phthaloyl-L-glutamic
acid (200 mg, 0.72 mmol) in methanol (10 mL) was added,
dropwise, thionyl chloride (1 mL). The reaction mixture was
refluxed for 6 h. The solvent was removed under reduced
pressure, dissolved in ethyl acetate (100 mL), and then washed
with saturated aqueous Na2CO3 solution (2 × 30 mL) and
water (2 × 30 mL). The ethyl acetate layer was dried over Na2-
SO4 and then evaporated, leaving an oil, which upon purifica-
tion by silica gel chromatography, using CH2Cl2:EtOAc (1:1)
Compound 15 (red solid): mp 240-242 °C; 1H NMR (CDCl3)
δ 9.44 (s, 1 H), 8.05-8.02 (m, 1 H), 7.86-7.76 (m, 3 H), 5.75-
5.64 (m, 1 H), 3.57-3.52 (m, 1 H), 3.09-2.99 (m, 2 H), 2.19-
2.12 (m, 1 H). 13C NMR (DMSO): 208.16, 207.98, 166.10,
165.39, 134.32, 133.11, 132.42, 124.30, 122.15, 121.11, 49.64,
21.29; MS (DEI) m/z 291 (MH+); HRMS (DEI) calcd for
1
as the eluent, gave compound 7 (161 mg, 73%) as an oil; H
C
13H11N2O2S2 291.0262 (M+), found 291.0264; Anal. (C13H10
N2O2S2‚0.5H2O) C, H, N.
-
NMR (CDCl3) δ 7.87-7.84 (m, 2H), 7.75-7.72 (m 2H), 4.91
(dd, J ) 5 Hz, J ) 9 Hz, 1H), 3.73 (s, 3H), 3.62 (s, 3H), 2.67-
2.56 (m, 1H), 2.51-2.44 (m, 1H), 2.41-2.35 (m, 2H).
Dim eth yl 2-(1,3-Dih yd r o-1-oxo-3-th ioxo-2H-isoin d ol-2-
yl)p en ta n ed ioa te (8) a n d Dim eth yl 2-(1,3-Dih yd r o-1,3-
2,3-Dih yd r o-3-th ioxo-2-(2,6-d ith ioxo-3-p ip er id in yl)-1H-
isoin d ol-1-on e (16). The mixture of compound 13 (29 mg, 0.1
mmol), LR (22 mg, 0.054 mmol), and morpholine (9 µL, 0.1