K. M. K. Kutterer et al. / Bioorg. Med. Chem. Lett. 15 (2005) 2527–2531
2531
(note: temperature setting was not used since these
reactions were run to dryness given that the driving force
of the reaction is the elimination of ethanol). To 1,2-bis(4-
chlorophenyl)hydrazine 1 (2.53 g, 10 mmol) was added
10 mL of sodium ethoxide (21 wt% in ethanol) and diethyl
malonate (5 mL) and subjected to microwave heating for
2 min. The residue was dissolved in water (50 mL),
acidified with 1 N hydrochloric acid, and extracted with
dichloromethane (100 mL). The organic extracts were
concentrated to give 3.05 g of 1,2-bis(4-chlorophenyl)pyr-
5748) and consisted of 150 nM MurA, 200 lM PEP, and
200 lM UDP-N-acetylglucosamine (UDP-GlcNAc) in
25 lL of 25 mM Tris, pH 8. The reaction was incubated
for 30 min at 37 ꢁC and was terminated by the addition of
210 lL of malachite green reagent (0.03% malachite green,
1.4% ammonium molybdate, and 1.3 N HCl). Inhibition
of MurA was performed by preincubating of the enzyme
and compound for 10 min at 37 ꢁC before addition of the
substrates. The amount of phosphate released during the
reaction was detected spectrometrically at 660 nm using a
Molecular Devices Spectra Max 250 with SoftMax soft-
ware. The results were compared to the inhibition of the
enzyme by fosfomycin (commercially available MurA
inhibitor). The results are presented as % inhibition at a
compound concentration of 25 lg/mL. The calculation
follows the formula: % inhibition = 100 ꢁ (OD for sam-
ple)/(OD mean of control) · 100. IC50s were then esti-
mated by linear regression analysis using the percent
inhibition data bracketing 50% inhibition.
1
azolidine-3,5-dione 6. H NMR (DMSO-d6, 400 MHz): d
3.78 (s, 2H), 7.32 (m, 4H), 7.42 (m, 4H), MS [(ꢁ)ESI, m/z]:
319.1 [MꢁH].
6. (a) Banthorpe, D. V.; Cooper, A. J. Chem. Soc. B 1968, 6,
608; (b) Baldwin, C. M.; Song, P. S.; Shine, H. J.
J. Am. Chem. Soc. 1970, 92, 3284; (c) Oae, S.; Tsujimoto,
N.; Nakanishi, A. Bull. Chem. Soc. Jpn. 1973, 46,
535.
7. Representative procedure for microwave assisted alkyl-
ation of pyrazolidine-3,5-diones: Reactions were carried
out in open glass vials using a CEM Corporation Mars 5
commercial multimode microwave at a setting of 200 ꢁC
and a maximum of 900 W or in closed glass vessels using a
Personal Chemistry Smith Workstation single mode
microwave at 200 ꢁC. To a solution of 1,2-bis(4-chloro-
phenyl)pyrazolidine-3,5-dione (0.064 g, 0.2 mmol) in
N,N-dimethylformamide (1 mL) was added lithium car-
bonate (0.044 g, 0.6 mmol) and benzyl 2-bromoethyl ether
(0.043 g, 0.2 mmol). The reaction was subjected to micro-
wave heating for 3.5 min, and then concentrated. The
residue was dissolved in water (1.0 mL), acidified with 1 N
hydrochloric acid, and extracted with dichloromethane
(4.0 mL). The organic extract was concentrated, taken up
in acetonitrile and purified by semi-preparative RP-HPLC
(Gilson Semi-Preparative HPLC system with Unipoint
Software v. 1.71, Phenomenex C18 Luna column,
21.6 · 100 mm, 5 l particle size, water–acetonitrile solvent
system with added 0.02% TFA buffer, at 22.5 mL/min) to
give 7g (0.012 g) and 8b (0.004 g) [LC/MS (Hewlett
Packard 1100 MSD with ChemStation Software, xterra
C18 2.1 mm · 30 mm column, 3.5 l particle size, at 50 ꢁC,
water–acetonitrile solvent system with added 0.02% TFA
buffer at 1.0 mL/min flow rate, 254 nm DAD detection;
API-ES scanning mode, fragmentor 140 mV): 7g m/z 455.0
(M+H); retention time 3.279 min, 8b m/z 589.1 (M+H);
retention time 3.622 min].
9. MurB inhibition studies: The inhibition of MurB
enzymatic activity by pyrazolidinedione derivatives was
determined using substrates NADPH (Sigma), and bio-
chemically synthesized, HPLC purified sub EP-UNAG
following the method of Dhalla et al. (Biochemistry 1995,
34, 5390). The reaction was determined following an initial
20 min preincubation of 20 nM of the enzyme with the
inhibitor. The substrate mixture was then added to the
enzyme-inhibitor mixture, to a final concentration of
50 lM EP-UNAG and 100 lM NADPH. MurB activity
was monitored using Molecular Devices Spectra Max 250
with SoftMax software. At least six concentrations of
inhibitor, between 1.5 and 50 lM, were used for each
compound tested. The IC50 values were derived using data
analysis function of Microsoft Excel program (Sigmoid
Curve Hill analysis 0–100).
10. MICs: The in vitro determination of the MICs against
aerobic bacteria was performed by the microdilution broth
method as recommended by the National Committee for
Clinical Laboratory Standards (Approved Standards M7 -
A3, 1997). Mueller–Hinton Broth was used for the
Staphylococci, and Enterococci. Streptococci were tested
in Mueller–Hinton Broth supplemented with 5% sheep
blood. Microtiter plates containing 50 lL sheep blood per
well of 2-fold serial dilutions of the antibacterial agents in
the appropriate broth were inoculated with 50 lL of
inoculum to yield a final density of 1–5 · 105 CFU/mL.
The MICs were determined after 18–22 h of incubation at
35 ꢁC in ambient air.
8. MurA inhibition studies: The MurA reaction followed the
method of Marquardt et al. (J. Bacteriol. 1992, 174(17),