A R T I C L E S
Gilmartin et al.
DIPEA, and 300 mL of CH2Cl2 was stirred for 1 h under N2. The yellow
solution was extracted with H2O (5 × 100 mL). The combined aqueous
washings were extracted with CH2Cl2 (50 mL). The combined organic
extracts were dried over anhydrous Na2SO4 and flash evaporated to
give a yellow oil. The oil was stirred in an aqueous solution of 3 M
HCl (150 mL). The acid was removed under reduced pressure to yield
a yellow oil, which was dried for 16 h under vacuum. The pure product
was obtained by recrystallization from CH3CN, followed by vacuum-
drying for 16 h. Yield ) 2.235 g (48.1%) (1H NMR, 300 MHz, d6-
DMSO): 3.08 (m, 1 H); 3.18 (m, 2 H); 3.29 (m, 2 H); 3.40 (m, 2 H);
3.91 (d, 2 H); 4.05 (s, 1 H); 4.13 (m, 1 H); 4.22 (m, 3 H); 7.23 (t, 2
H); 7.31 (t, 2 H); 7.41 (t, 1 H); 7.59 (d, 2 H); 7.72 (t, 2 H); 8.80 (d, 2
H); 8.71 (d, 2 H).
COSY, HMQC, and HMBC NMR; see Supporting Information. (ESI+)
Calculated: (m + H)+ ) 1493.7, (m + Na)+ ) 1515.6. Found: (m +
H)+ ) 1493.8, (m + Na)+ ) 1515.7.
D. Bz-(2)3G-NH2. A 25 mL fritted polypropylene reservoir (Alltech)
was used in the synthesis of the oligomer. The reservoir was heated to
∼50 °C with electric heating tape (Barnstead/Thermolyne), and N2 was
bubbled through the DMF solution. The synthesis uses 20% piperidine
in DMF for Fmoc-deprotection (15 min), and solutions of 0.5 M HBTU
and 0.5 M DIPEA for monomer and amino acid coupling (30 min),
and 0.5 M benzoic anhydride and 0.5 M DIPEA in DMF for capping
(5 min). Each coupling step was monitored for completion using a
Kaiser test.10 After the desired number of cycles, the resin was washed
3 × 10 mL with DMF, followed by 3 × 10 mL CH2Cl2. The oligomer
was cleaved from the resin by stirring the resin with 10 mL of 2.5%
H2O, 2.5% TIS in TFA for 2 h. The mixture was filtered in 4 equal
volumes through a glass frit into 4 × 40 mL of cold Et2O. The oligomer
was collected as pale yellow pellets by centrifugation, and the pellets
washed with 3 × 30 mL with Et2O and dried under vacuum for 1 h.
The desired oligomer was separated from deletion sequences using
an HPLC gradient elution of 10% (0.1% TFA in CH3CN):90% (0.1%
TFA in H2O) ramped to 28% (0.1% TFA in CH3CN):72% (0.1% TFA
in H2O) over 15 min at 20 mL/min. After fraction collection, the
oligomer was lyophilized to give a pale pink solid. Overall Bz-(2)3G-
NH2 yield ) 1.2 mg (1.19%). (1H NMR, 400 MHz, MeOH-d4): 2.22-
2.41 (m, 9 H); 3.38-4.32 (m, 26 H); 7.00-8.59 (m, 23 H).
Identification of these peaks and confirmation of purity were ac-
complished with HMQC NMR; see Supporting Information for detailed
analysis. (ESI+) Calculated: (m + H)+ ) 1109.5. Found: (m + H)+
) 1109.4, (m + Na)+ ) 1131.5, (m + K)+ ) 1147.5.
Spectrophotometric Titrations. A. Bz-(1)6G-NH2 + [Cu(pda)-
(H2O)2] or [Cu(tpy)(H2O)2](ClO4)2. Titrations were performed using
a Varian Cary 500 spectrophotometer. A solution of the Bz-(1)6G-NH2
was prepared in methanol (MeOH). The concentration of the oligomer
(2.222 mM) was determined using its molar extinction coefficient (ꢀ
) 31 860 M-1 cm-1) at 256 nm. This solution was titrated in 5, 10,
and 20 µL increments into 2.5 mL of a 0.6608 mM [Cu(pda)(H2O)2]
methanolic solution at 4 min intervals between each addition. For each
addition, the reference solution was diluted with an equal volume of
MeOH to account for concentration effects. UV-visible absorption
spectra were acquired for each iterative addition of oligomer. The
titration product was precipitated by slow addition of ether, filtered,
rinsed with ether, and reprecipitated from methanol. Titrations with
[Cu(tpy)(H2O)](ClO4)2 were performed analogously using a 2.804 mM
methanolic solution containing a small amount (3.361 µM) H2O. The
titration product was isolated as for the [Cu(pda)] adduct.
B. Fe(ClO4)2 + Bz-(2)3G-NH2. Titrations were performed on a
Varian Cary 50 spectrophotometer. A solution of Bz-(2)3G-NH2 was
prepared, and the concentration was determined to be 70.8 µM using
its molar extinction coefficient (ꢀ ) 6322.6 M-1 cm-1) at 284 nm. A
solution of 784 µM [Fe(ClO4)2] in MeOH was added in 2 µL increments
to the oligomer solution in 5 min intervals, and UV-visible absorption
spectra were obtained for each addition. The titration products were
precipitated with NH4PF6, the supernatant was decanted, and the solid
was rinsed with copious amounts of water.
C. Cu(OAc)2 + Bz-(2)3G-NH2. This titration was performed
similarly to that from the Fe(ClO4)2 experiment, except that a 734.5
µM Bz-(2)3G-NH2 solution in MeOH was titrated with a solution of
9.29 mM Cu(OAc)2 in MeOH in 20 µL increments at 15 min intervals.
Spectra were corrected for the background absorbance of unbound Cu
acetate. The titration product was isolated and purified as above.
Elemental Analysis Calculated: 47.99%, C; 4.64%, H; 11.87%, N.
Found: 47.72%, C; 4.96%, H; 12.04%, N.11
B. Fmoc-aeg(bpy)-OH‚HCl (2): Fmoc-aeg-OtBu‚HCl (1.333 g,
0.003 08 mol) was dissolved in CHCl3 (100 mL) and washed with an
aqueous solution of saturated NaHCO3 (3 × 100 mL). The washings
were extracted with CHCl3 (50 mL). The organics were then dried over
Na2SO4, and the solvent was removed under vacuum leaving a clear
oil. A solution of 4′-methyl-2,2′-bipyridine-4-acetic acid9 (1.004 g,
0.004 40 mol), 2-(1H-benzotriazole-1-yl)-1,1,3,3-tetramethyluronium
hexafluorophosphate (HBTU, Novabiochem, 2.236 g, 0.005 90 mol),
and DIPEA (1.015 mL, 0.005 84 mol) in N,N-dimethylformamide
(DMF, 100 mL) was prepared, added to the oil, and was stirred under
N2 for 2 h. The tert-butyl-protected product was then precipitated by
addition of the solution to ice water (1.3 L). The precipitate was
collected by filtration and dried in vacuo overnight, leaving a yellow
solid. The solid was dissolved in a solution of 2.5% water in
trifluoroacetic acid (TFA, 10 mL). The solution was stirred for 2 h
and then precipitated from cold ethyl ether (Et2O, 200 mL), giving the
product as an off-white powder. Yield ) 1.014 g (49.6%) (1H NMR,
300 MHz, d6-DMSO): 2.50 (s, 3 H); 3.17 (t, 1 H); 3.28 (t, 1 H); 3.38
(t, 1 H); 3.49 (t, 1 H); 3.84 (s, 1 H); 4.00 (d, 2 H); 4.25 (m, 4 H); 7.29
(t, 2 H); 7.40 (t, 2 H); 7.53 (m, 2 H); 7.65 (t, 2 H); 7.87 (d, 2 H); 8.37
(s, 2 H); 8.65 (m, 2 H). (ESI+) Calculated: (m + H)+ ) 551.2.
Found: (m + H)+ ) 551.3.
C. R1-(1)6R2-NH2 (R1 ) Acetyl (Ac) or Benzyl (Bz); R2 ) Lysine
(K) or Glycine (G)). The oligomer was synthesized at room temperature
on a Pioneer peptide synthesis system (Applied Biosystems) with DMF
as the solvent. A solution of 20% piperidine in DMF (Applied Bio-
systems) was used for Fmoc-deprotection (5 min), and 0.5 M diiso-
propylcarbodiimide (DIPCDI, Applied Biosystems) and 0.5 M DIPEA
were used for the couplings (30 min). A capping cycle was performed
after every coupling with 0.5 M benzoic anhydride (Avocado) or 0.5
M acetic anhydride and 0.5 M DIPEA (5 min).
Following synthesis, the resin was washed 3 × 10 mL with DMF,
followed by 3 × 10 mL alternating 2-propanol and CH2Cl2. The
oligomer was cleaved from the resin by stirring the resin with 10 mL
of 2.5% H2O, 2.5% triisopropylsilane (TIS) in TFA for 2 h. The mixture
was filtered in 4 equal volumes through a glass frit into 4 × 40 mL of
cold Et2O. The solutions were mixed and kept at 0 °C for 1 h. The
oligomer was collected by centrifugation as pale yellow pellets and
washed 3 × 10 mL with Et2O and dried under vacuum for 1 h.
Purification of the oligomer (the major product) was accomplished
by preparatory scale HPLC using a gradient elution of 5% (0.1% TFA
in CH3CN):95% (0.1% TFA in H2O) to 15% (0.1% TFA in CH3CN):
85% (0.1% TFA in H2O) ramped over 13 min with a total flow of 20
mL/min and a fraction collection program. TFA and CH3CN were
removed from the collected fractions under reduced pressure, and H2O
was removed by lyophilization. Overall [Bz-(1)6G-NH2] yield ) 0.072
g (33%) (1H NMR, 300 MHz, d6-DMSO): 3.15-3.75 (m, 26 H); 3.75-
4.30 (m, 24 H); 7.08 (s, 1 H); 7.21 (s, 1 H); 7.50 (m, 4 H); 7.71 (m,
14 H); 8.01 (m, 1 H); 8.30 (m, 3 H); 8.50 (m, 2 H); 8.70 (m, 12 H).
Further confirmation of purity and identity were accomplished with
(10) Kaiser, E.; Colescott R. L.; Bossinger, C. D.; Cook, P. I. Anal. Biochem.
1970, 34, 595-598
(11) Insufficient quantities of material were available to quantitatively determine
the percentage of metal ion in the sample.
(9) Della Ciana, L.; Hamachi, I.; Meyer, T. J. J. Org. Chem. 1989, 54, 1731-
1735.
9
9548 J. AM. CHEM. SOC. VOL. 127, NO. 26, 2005