Journal of Medicinal Chemistry
Article
+
+
concentrated to a final volume of 7.5 mL and filtered through a 0.22
μm sterile filter prior to its use in biological assays. The concentration
of conjugate 2 was determined as 3.16 mg/mL (23.7 mg) by Abs
for C H N O S + H : 859.98 [M + H] ; found: 859.33; calcd for
40 54 6 13
+
+
C H N O S + Na : 881.96 [M + Na] ; found: 881.33.
Boc-Val-Ala-PAB-α-amanitin (11). Vacuum-dried α-amanitin (57
mg, 0.062 mmol) was dissolved in dry dimethyl acetamide (DMA; 3
mL) under argon at room temperature. Boc-Val-Ala(SEM)-PAB-Br
linker 10 (145.5 mg, 0.248 mmol) and 0.2 M solution of cesium
carbonate (Cs CO ) (372.2 μL, 0.074 mmol) were added. After 4 h at
4
0
54
6
13
2
80 nm
MW = 61425.21 Da, ε280 = 85 500 cm−
1
M
−11
). Retention time, 9.7
(
min; SEC-HPLC purity, >99%.
5
-Benzyl 1-(tert-butyl) (((S)-1,5-di-tert-butoxy-1,5-dioxopentan-
2
-yl)carbamoyl)-L-glutamate (5). α,γ-Di-tert-butyl L-glutamate (2 g,
2
3
6
.76 mmol) was added in portions at 0 °C to a solution of
room temperature, the reaction mixture was acidified to pH 5 with
AcOH. The solvent was removed in vacuo, and the residue was
purified by RP-HPLC (λ = 305 nm; gradient: 0−5 min 5% B; 20−25
min 100% B; 27−35 min 5% B; A = water; B = MeOH). The solvents
disuccinimidyl carbonate (DSC) (1.73 g, 6.76 mmol) in N,N-
dimethylformamide (DMF) (31.6 mL) to form the NHS-activated
ester 4. After 50 min, triethylamine (TEA) (937 μL, 6.76 mmol) was
added. After complete conversion, α-tert-butyl-γ-benzyl L-glutamate
were then evaporated to dryness, affording 11 as a colorless solid
+
(2.23 g, 6.76 mmol) and TEA (1.87 mL, 13.52 mmol) were added at
(54.46 mg, 62%). MS (ESI): m/z calcd for C65
1425.70 [M + H] ; found: 1425.23.
H
N
97
O
13
19SSi + H :
+
0
°C. The reaction mixture was stirred overnight at room
temperature. DMF was removed in vacuo and the residue was
dissolved in methyl t-butyl ether (MTBE) (100 mL). The organic
layer was washed with a 15% citric acid solution (2 × 100 mL), water
DBCO-Val-Ala-PAB-O-α-amanitin (12). α-Amanitin precursor S-
7 (80.32 mg, 0.067 mmol) was dissolved in absolute DMF (1.6 mL).
1
Dibenzocyclooctine-N-succinimidyl ester (DBCO-SE) (29.8 mg,
0
0
.074 mmol) dissolved in DMF (1.6 mL) and DIPEA (22.9 μL,
.13 mmol) was added to the solution. The reaction mixture was
(2 × 100 mL), saturated NaHCO solution (2 × 100 mL), and water
3
(80 mL) in sequence. The organic layer was dried over MgSO4,
stirred at rt for 2.5 h.
filtered, and concentrated. The resulting yellowish oil was purified by
chromatography on a silica gel column with a gradient of 0−33%
EtOAc in hexane to provide urea 5 as a colorless syrup (3.02 g, 77%).
The reaction was quenched by adding H O (100 μL), and DMF
2
was evaporated in vacuo. The residue was dissolved in methanol
(MeOH) (2 mL) and dripped into precooled MTBE (40 mL) and
centrifuged at 0 °C. The pellet was washed with MTBE (40 mL),
collected, and dried in vacuo. The compound was purified by RP-
HPLC [λ = 305 nm; gradient: 0−15 min 5% B; 18 min 100% B; 1.5−
+
+
MS (ESI): m/z calcd for C H N O + H : 579.72 [M + H] ; found:
3
0
46
2
9
+
+
5
6
1
79.17; calcd for C H N O + Na : 601.70 [M + Na] ; found:
01.35; calcd for C H N O + Na : 1180.41 [2M + Na] ; found:
30 46 2 9
+
+
6
0
92
4
18
180.35.
S)-5-(tert-Butoxy)-4-(3-((S)-1,5-di-tert-butoxy-1,5-dioxopentan-
-yl)ureido)-5-oxopentanoic Acid (6). Compound 5 (3.02 g, 5.21
22 min 5% B; A = water with 0.05% TFA, B = ACN; flow rate: 30
(
mL/min]. Fractions corresponding to the product were directly
2
lyophilized affording 12 (77.88 mg, 78%) as a white powder. MS
mmol) was hydrogenated at room temperature in ethyl acetate
EtOAc) (27.3 mL) and in the presence of Pd-C overnight. Palladium
+
+
(
1
ESI): m/z calcd for C H N O S + H : 1482.67 [M + H] ; found:
(
73 88 14 18
2
+
2+
481.42; calcd for C H N O S + 2H : 741.84 [M + 2H] ;
was filtered off, and the filtrate was washed thoroughly with EtOAc.
The filtrate was concentrated under reduced pressure to provide
DUPA precursor 6 as a clear colorless syrup (2.45 g, 96%). MS (ESI):
m/z calcd for C H N O + H : 489.59 [M + H] ; found: 489.20;
calcd for C H N O + Na : 978.16 [2M + Na] ; found: 978.22.
73 88 14 18
found: 741.42.
Maleimidocaproyl-Val-Ala-PAB-α-amanitin (13). NH -Val-Ala-
2
+
+
PAB-α-amanitin 17 (10.0 mg, 0.0076 mmol) was dissolved in dry
DMF (200 μL). ECMS (4.69 mg, 0.015 mmol), dissolved in DMF
2
3
40
2
9
+
+
46
82
4
18
(104 μL), and DIPEA (5.18 μL, 0.0304 mmol) were added. After 1 h
DUPA-8-Aoc-Phe-Phe-Cys-OH (8). Cys-preloaded 2-chlorotrityl
at room temperature under argon, the mixture was dripped into
precooled MTBE (40 mL) and centrifuged at 0 °C. The precipitate
was collected, washed with MTBE (40 mL), centrifuged, and
collected. The crude product was dried in vacuo and purified by
RP-HPLC [λ = 305 nm; gradient: 0−5 min 5% B; 20−25 min 100%
B; 27−35 min 5% B; A = water with 0.05% TFA; B = MeOH with
(H-Cys(Trt)-2ClTrt) resin (391 mg, 0.25 mmol) was swollen in
dimethylformamide (DMF)/dichloromethane (DCM) (1:1) for 30
min prior to use. For each coupling, 2.5 equiv of Fmoc-protected
amino acid or 6, 4.25 equiv of 3-[bis(dimethylamino)methyliumyl]-
3
H-benzotriazol-1-oxide hexafluorophosphate (HBTU), 4.25 equiv of
N-hydroxybenzotriazole (HOBt), and 8.5 equiv of N-ethyl-N-
propan-2-yl)propan-2-amine (DIPEA) were used. Each coupling
0
.05% TFA]. Upon freeze-drying, the title compound was obtained as
(
a colorless powder (4.22 mg, 40%). MS (ESI): m/z calcd for
C H N O S : 1387.52 [M] ; found: 1387.42; C H N O S +
2
7
reaction was carried out at 60 °C and 40 W for 10 min. After each
coupling reaction, the resin was washed with DCM (×3) and DMF
+
+
6
4
86 14 19
64 86 14 19
2+
2+
+
+
H : 694.79 [M + 2H] ; found: 694.33; C H N O S + H + K :
13.83 [M + H + K] ; found: 713.33.
DUPA-8-Aoc-Phe-Phe-(EG ) -Orn(N )-Lys(Gly )-NH (15). Amphi-
64 86 14 19
(
×3) in sequence. Then, 20% piperidine in DMF was added to the
reaction vessel and two deprotection cycles (60 °C, 40 W, 30 s; 60
C, 40 W, 2.5 min) were performed. After draining, the resin was
2+
3
2
3
3
2
°
Spheres 40 RAM resin (703 mg, 0.267 mmol) was swollen 1 h in
DCM, washed with, and resuspended in DMF for 30 min. The resin
washed with neat DMF (×3) and DCM (×2). Resin-bound peptide
was cleaved with a trifluoroethanol (TFE)/acetic acid (AcOH)/DCM
was deprotected with 20% piperidine in DMF (30 s, rt a
0 °C) and then shaken with Fmoc-Lys(Mtt)-OH (4.0 equiv), TBTU
3.99 equiv), and DIPEA (8.0 equiv) in DMF (8 mL) for 1 h at rt and
̀
2 min, 30 W,
(
1:1:8, 10 mL) mixture at 23 °C for 1.5 h. The resin was then washed
with fresh TFE/AcOH/DCM (1:1:8) mixture (10 mL, 2 min), DCM
10 mL, 2 min), and methanol (MeOH) (10 mL, 2 min) in sequence.
5
(
(
then under MW irradiation (30 W, 50 °C, 3 min). Coupling was
repeated twice with several DMF washings in between. Fmoc was
removed by suspending the resin in 20% piperidine in DMF (3 mL)
under the conditions described above. Each coupling was then
performed by shaking the resin with the Fmoc-protected amino acid
The filtrates were collected and concentrated in vacuo. The peptide
was subsequently treated with a trifluoroacetic acid (TFA)/
triisopropylsilane(TIS)/H O (95:2.5:2.5, 8 mL) and 1,4-dithiothrei-
2
tol (DTT) (362 mg) mixture and stirred at room temperature under
argon for 1.5 h. The mixture was co-evaporated with toluene (2 × 8
mL). Addition of precooled MTBE (40 mL) caused peptide
precipitation. The precipitate was isolated by centrifugation at 0 °C,
collected, and washed with additional precooled MTBE (40 mL);
centrifuged at 0 °C; and collected. The pellet was dissolved in
(
4.0 equiv), TBTU (3.99 equiv), and DIPEA (8.0 equiv) in DMF (8
mL) under MW irradiation (30 W, 50 °C, 3 min, ×3), followed by
Fmoc-removal with the conditions mentioned herein. The protected
DUPA reagent 6 (3.0 equiv) was coupled using TBTU (2.99 equiv)
and DIPEA (6.0 equiv) under MW irradiation (30 W, 50 °C, 3 min,
×3). Prior to cleavage, Mtt was removed by suspending the resin-
bound peptide in DCM/TIS/TFA (97:2:1, 4 mL) and shaking at rt
for 10 min. The procedure was repeated till no Mtt-OH could be
detected in the filtrate by HPLC (approx. 20 cycles). Afterward,
acetonitrile (ACN)/H O (1:1, v:v, 2 mL) and purified in portions by
2
preparative RP-HPLC [λ = 210 nm; gradient: 0 min 5% B; 15−18
min 100% B; 18.50−22 min 5% B; A = water with 0.05% TFA, B =
acetonitrile; flow rate: 30 mL/min]. Fractions corresponding to the
target compound were combined, evaporated, and lyophilized
coupling with Fmoc-Gly -OH (4.0 equiv), TBTU (3.99 equiv), and
DIPEA (8.0 equiv) in DMF (8 mL) was carried out under MW
3
t
overnight from tert-butanol ( BuOH)/H O (4:1, v:v, 5 mL) to afford
2
reagent 8 as a white powder (122.9 mg, 85%). MS (ESI): m/z calcd
irradiation (30 W, 50 °C, 3 min, ×3), followed by Fmoc-removal with
4
126
J. Med. Chem. 2021, 64, 4117−4129