J.-C. Su et al. / European Journal of Medicinal Chemistry 56 (2012) 127e133
131
J ¼ 8.0 Hz, 1H), 7.25 (t, J ¼ 7.6 Hz, 1H), 7.08 (d, J ¼ 2.4 Hz, 1H), 7.01 (s,
H), 6.98 (s, 1H), 6.64 (d, J ¼ 3.6 Hz, 1H), 6.26 (dd, J ¼ 3.6 Hz,
6.2.2.2. 3-Methoxy-5-(thiophen-2-yl)-1H-pyrrole-2-carbaldehyde
1
1
(7b). H NMR (400 MHz, CDCl
3
):
d
9.46 (s, 1H), 7.32 (d, J ¼ 5.2 Hz,
13
J ¼ 2.4 Hz, 1H), 5.82 (s, 1H), 3.88 (s, 3H), 1.51 (s, 9H); C NMR
100 MHz, CDCl 27.5 (3C), 58.1, 83.7, 98.0, 110.7, 112.0, 114.4,
18.4, 118.7 121.0, 122.8, 125.2, 126.0, 128.6, 130.3, 136.0, 138.11,
1H), 7.30 (d, J ¼ 3.6 Hz, 1H), 7.07 (dd, J ¼ 5.2 Hz, J ¼ 3.6 Hz, 1H), 6.06
(
3
)
d
(s, 1H), 3.89 (s, 3H).
1
þ
141.5, 150.0, 161.1, 167.1; LCMS(ESI): m/z 388.4 (100, M ꢂ H ). HRMS
6.2.2.3. 5-(1H-Indol-2-yl)-3-methoxy-1H-pyrrole-2-carbaldehyde
þ
1
calculated for C23
23
H N
3
O
3
(M þ H ): 389.1739. Found: 389.1744.
(7c). H NMR (400 MHz, DMSO-d
6
):
d
11.84 (bs, 1H), 11.43 (bs, 1H),
9
.42 (s, 1H), 7.53 (d, J ¼ 8.0 Hz, 1H), 7.38 (d, J ¼ 8.0 Hz, 1H), 7.12 (t,
6
.2.1.4. 2-(2-((1H-pyrrol-2-yl)methylene)-3-methoxy-2H-pyrrol-5-
J ¼ 7.6 Hz, 1H), 7.10 (s, 1H), 7.00 (t, J ¼ 7.6 Hz, 1H), 6.55 (d, J ¼ 2.8 Hz,
1
yl)-5-bromo-1H-indol (5d). H NMR (400 MHz, CDCl
3
):
d
7.65 (d,
1H), 3.88 (s, 3H).
J ¼ 1.6 Hz, 1H), 7.15 (dd, J ¼ 8.8 Hz, J ¼ 2.0 Hz, 1H), 7.07 (s, 1H), 6.88
(
s, 1H), 6.83 (d, J ¼ 8.4 Hz, 1H), 6.73 (s, 1H), 6.60 (d, J ¼ 3.6 Hz, 1H),
6.2.2.4. tert-Butyl-2-(5-formyl-4-methoxy-1H-pyrrol-2-yl)-1H-
1
3
1
6
CDCl
1
.22 (s, 1H), 6.12 (t, J ¼ 3.2 Hz, 1H), 4.04 (s, 3H); C NMR (100 MHz,
59.0, 96.2, 105.6, 111.6, 113.0, 113.4, 119.2, 121.4 123.8, 127.1
27.7, 129.6, 130.3 134.4, 136.5, 140.2, 160.8, 169.5; LCMS(ESI): m/z
indole-1-carboxylate (7d). H NMR (400 MHz, CDCl
3
):
d
9.98 (bs,
3
)
d
1H), 9.57 (s, 1H), 8.08 (d, J ¼ 8.0 Hz, 1H), 7.54 (d, J ¼ 8.0 Hz, 1H), 7.33
(t, J ¼ 7.6 Hz, 1H), 7.25 (t, J ¼ 7.6 Hz, 1H), 6.89 (s, 1H), 6.13 (d,
J ¼ 2.8 Hz, 1H), 3.90 (s, 3H), 1.59 (s, 9H).
þ
þ
3
68.2 (100, M þ H ); HRMS calculated for C18
H14BrN
3
O (M þ H ):
3
68.0393. Found 368.0345.
6.2.3. General procedure for the synthesis of compound 8ae8b
6
.2.1.5. 2-(2-((1H-pyrrol-2-yl)methylene)-3-methoxy-2H-pyrrol-5-
1.2 equiv 2,4-dimethyl pyrrole was added to a solution of 1.0
1
yl)-1H-indol (5e). H NMR (400 MHz, CDCl
H), 7.10 (t, J ¼ 7.2 Hz, 1H), 7.04e6.97 (m, 4H), 6.78 (s, 1H), 6.58 (d,
J ¼ 3.6 Hz, 1H), 6.23 (s, 1H), 6.12 (dd, J ¼ 3.6 Hz, J ¼ 2.4 Hz, 1H), 4.03
s, 3H); 13C NMR (100 MHz, CDCl
58.6, 95.8, 106.4, 111.1, 111.4,
18.0, 120.0, 120.4, 121.3, 124.1, 127.0, 128.4, 129.5, 133.0, 137.8, 140.1,
3
):
d
7.54 (d, J ¼ 8.0 Hz,
equiv aldehydes (compound 7) in 4 mL methanol. The mixture was
stirred and 1N methanolic HCl was added. The reaction was stirred
continuously overnight at room temperature under nitrogen.
Methanol was removed under rotary evaporation. The residue was
then purified by a flash column. This procedure afforded the ex-
pected coupling product in 81% to quantitative yield.
1
(
1
3
) d
þ
1
60.7, 168.8; LCMS(ESI): m/z 290.3 (100, M þ H ); HRMS calculated
þ
for C18
15
H N
3
O (M þ H ): 290.1288. Found 290.1281.
6
.2.3.1. 2-((3,5-Dimethyl-2H-pyrrol-2-ylidene)methyl)-5-(furan-2-
1
6
1
.2.1.6. 2-(3-methoxy-2-(thiophen-2-ylmethylene)-2H-pyrrol-5-yl)-
H-indol (5f). 1H NMR (400 MHz, CDCl ): 9.32 (bs, 1H), 7.64 (d,
4
yl)-3-methoxy-1H-pyrrole (8a). H NMR (400 MHz, MeOD-d ):
3
d
d
7.67 (d, J ¼ 1.6 Hz,1H), 7.03 (d, J ¼ 3.2 Hz,1H), 6.92 (s,1H), 6.60 (dd,
J ¼ 8.0 Hz,1H), 7.61 (d, J ¼ 5.2 Hz,1H), 7.47 (d, J ¼ 4.0 Hz,1H), 7.43 (d,
J ¼ 3.2 Hz, J ¼ 1.6 Hz, 1H), 6.10 (s, 1H), 5.89 (s, 1H), 3.90 (s, 3H), 2.35
þ
J ¼ 8.0 Hz, 1H), 7.26 (t, J ¼ 7.2 Hz, 1H), 7.23 (s, 1H), 7.12e7.07 (m, 2H),
(s, 3H), 2.19 (s, 3H); LCMS(ESI): m/z 269.6 (100, M þ H ); HRMS
þ
7.00 (s, 1H), 6.05 (s, 1H), 3.94 (s, 3H); LCMS(ESI): m/z 307.3 (100,
calculated for C16
(M þ H ).
H
16
N
2
O
2
(M þ H ): 269.1285. Found 269.1284
þ
þ
þ
M þ H ); HRMS calculated for C18
14
H N
2
OS (M þ H ): 307.0900.
Found: 307.0895.
6
.2.3.2. 2-((3,5-Dimethyl-2H-pyrrol-2-ylidene)methyl)-3-methoxy-
1
6
.2.1.7. 3-ethoxy-5-(thiophen-2-yl)-2-(thiophen-2-ylmethylene)-2H-
3
5-(thiophen-2-yl)-1H-pyrrole (8b). H NMR (400 MHz, CDCl ):d
1
pyrrole (5g). H NMR (400 MHz, CDCl
.55 (d, J ¼ 4.0 Hz,1H), 7.47 (d, J ¼ 5.2 Hz,1H), 7.45 (d, J ¼ 3.6 Hz,1H),
.20 (s, 1H), 7.11 (dd, J ¼ 5.2 Hz, J ¼ 4.0 Hz, 1H), 7.05 (dd, J ¼ 5.2 Hz,
3
):
d
7.59 (d, J ¼ 5.2 Hz, 1H),
7.44 (d, J ¼ 3.6 Hz, 1H), 7.35 (d, J ¼ 5.2 Hz, 1H), 7.08 (dd, J ¼ 5.2 Hz,
7
7
J ¼ 3.6 Hz, 1H), 6.88 (s, 1H), 5.96 (s, 1H), 5.83 (s, 1H), 3.89 (s, 3H),
þ
2.35 (s, 3H), 2.20 (s, 3H); LCMS(ESI): m/z 285.3 (100, M þ H );
13
þ
J ¼ 3.6 Hz, 1H), 5.96 (s, 1H), 3.89 (s, 3H); C NMR (100 MHz, CDCl
3
)
HRMS calculated for C16
285.1063.
H
16
N
2
OS (M þ H ): 285.1056. Found:
d
58.5, 96.5, 120.8, 127.2, 128.0, 128.6, 129.7, 133.8, 134.3, 139.2,
þ
1
40.6, 145.6, 164.4, 169.1; LCMS(ESI): m/z 274.2(100, M þ H ).
þ
HRMS calculated for C14
H11NOS
2
(M þ H ): 273.0282. Found:
6.2.4. General procedure for the synthesis of compound obatoclax,
8c and 8d
2
73.0281.
2,4-dimethyl pyrrole or indolyl-pyrrole (1.2 equiv) was added to
6
.2.2. Preparation of compound 7
a solution of 1.0 equiv aldehydes (7d) in 4 mL methanol. The
mixture was stirred and 1N methanolic TFA was added. The reac-
tion was stirred continuously overnight at room temperature under
nitrogen. Methanol was removed under rotary evaporation. The
residue was then purified by a flash column. This procedure affor-
ded the expected coupling product in 70% to quantitative yield.
PdCl (0.1 equiv, 59%) and PPh (0.45 equiv) was added to
2
3
a degassed solution of toluene (1 mL). The mixture became bright
yellow and was stirred at 70 C for 20 min under nitrogen. The
freshly prepared Pd(PPh ) in toluene suspension was transferred
3 4
into a solution of 1.0 equiv bromo pyrrole enamine (compound 6)
and 1.5 equiv aryl boronic acid in 10% water/dioxane (5 mL) purged
with nitrogen. Three-equiv sodium carbonate was added. The
ꢁ
6.2.4.1. 2-(5-((3,5-Dimethyl-2H-pyrrol-2-ylidene)methyl)-4-
ꢁ
1
reaction mixture was stirred at 100 C for 90 min and then poured
methoxy-1H-pyrrol-2-yl)-1H-indole
(400 MHz, MeOD-d ):
(obatoclax).
H
NMR
onto 50 mL ice-water. The pH of the mixture was adjusted to 7.0
using 2N HCl (5 mL) and stirred for 20 min. The slurry was extracted
with ethyl acetate (20 mL) twice. The precipitate was recovered by
filtration, washed with water and collected from acetone. The solid
was recrystallized by 1:2 chloroform:ether (5 mL). This procedure
afforded the expected coupling product in 71% to quantitative yield.
4
d
7.56 (d, J ¼ 8.0 Hz, 1H), 7.38 (d, J ¼ 8.0 Hz,
1H), 7.15 (t, J ¼ 7.6 Hz, 1H), 7.00 (t, J ¼ 7.6 Hz, 1H), 6.96 (s, 1H), 6.90
(s, 1H), 6.25 (s, 1H), 5.87 (s, 1H), 3.95 (s, 3H), 2.38 (s, 3H), 2.20 (s,
þ
3H); LCMS(ESI): m/z 318.2 (100, M þ H ).
6.2.4.2. tert-Butyl-2-(5-((3,5-Dimethyl-2H-pyrrol-2-ylidene)methyl)
1
4
-methoxy-1H-pyrrol-2-yl)-1H-indole-1-carboxylate (8c). H NMR
6
.2.2.1. 5-(Furan-2-yl)-3-methoxy-1H-pyrrole-2-carbaldehyde (7a).
(400 MHz, CDCl
3
):
d
8.10 (d, J ¼ 8.0 Hz, 1H), 7.56 (d, J ¼ 8.0 Hz, 1H),
1
H NMR (400 MHz, CDCl
J ¼ 1.6 Hz,1H), 6.82 (d, J ¼ 3.6 Hz,1H), 6.47 (dd, J ¼ 3.6 Hz, J ¼ 1.6 Hz,
H), 6.10 (d, J ¼ 2.4 Hz, 1H), 3.89 (s, 3H).
3
):
d
10.03 (bs, 1H), 9.50 (s, 1H), 7.43 (d,
7.32 (t, J ¼ 7.6 Hz, 1H), 7.22 (t, J ¼ 7.6 Hz, 1H), 6.95 (s, 1H), 6.93 (s,
1H), 5.83 (s, 1H), 5.82 (s, 1H), 3.88 (s, 3H), 2.30 (s, 3H), 2.21 (s, 3H),
1.47 (s, 9H); DIP(EI-70ev): m/z 417.3 (53, M), 360.1 (89), 317.2 (100),
1