10
S.Y. Alraqa, K. Alharbi and A. Aljuhani et al. / Journal of Molecular Structure 1225 (2021) 129192
Microwave procedure: Benzotriazole (1) (1 mmol), potassium
200, 100, and 50, μg/mL) of the reported compounds and permit-
ted to incubate for the next 24 h. The cells were examined by
adding 15.0 μL (5.0 mg/mL MTT). At 37 °C for 4 h, the individual
medium from each well was cleared. The cells were re-suspended
in 100 μL of DMSO and the plate directly covered with aluminum
foil, shadowed by mild shaking on a shaker for around 15 min. Ab-
sorbance was recorded at 540 nm [45] and the percent stop in pro-
liferation was intended by the formula in Eq. (2).
carbonate (1.1 mmol), propargyl bromide (1.2 mmol) and DMF
(5 mL) were kept in locked borosilicate glass container fitted with
a silicone cap and open to irradiation for 2 min at 50 °C by means
of a microwave reactor at 300 W. The reaction was treated as de-
fined in the conventional process previously given for alkyne 2
(98% yield).
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4.2. General click procedure for the synthesis of 1,2,3-triazoles 4a-c,
6a-c and 8a-j
% Inhibition = AControl − ASample /AControl × 100
The detailed procedure is given in Supplementary information.
(2)
Conventional procedure: A solution of copper sulfate (0.10 g)
and sodium ascorbate (0.15 g); in water (10 mL); was added to
a solution of alkyne 2 (1 mmol) in DMSO (10 mL) with stirring.
Thereafter, an appropriate azide (1 mmol) was added, and the re-
action mixture was stirred at room temperature for 4–10 h. The
reaction was monitored via TLC (hexane-ethyl acetate), and after
the completion of the reaction, iced-water was added in the mix-
ture. The precipitate made was collected by filtration, treated with
a saturated solution of NH4Cl and recrystallized from ethanol/DMF
to give the targeted 1,2,3-triazoles 4a-c, 6a-c and 8a-j.
4.5. Docking study
The docking studies of 1,2,3- triazole complexes were done by
Intel® dual CPU (1.86 GHz) with Windows XP operating system.
Marwin Sketch software was utilized to draw the structures of
1,2,3- triazole compounds. The structures were cleaned to 3D and
saved in PDB file format [53]. After that, the structure of DNA
(pdb ID: 1bna) was downloaded from protein data bank. Using
AutoDock Tools (ADT) 4.2 the structure of DNA to be docked was
prepared by assigning Gastegier charges, merging non-polar hydro-
gen atoms and saving it in PDBQT file format. Docking was per-
formed with AutoDock 4.2 (Scripps Research Institute, USA) con-
sidering all the rotatable bonds of the ligand as rotatable and the
receptor as rigid [54]. Using the same tool, an 1,2,3-triazole com-
pounds (as a ligand) were edited to be saved in PDBQT formate.
The grid box size of 60 × 80 × 110 Aᵒ with 0.375 Aᵒ spacing was
used. After saving both files in PDBQT formate, vina software was
used to get binding energy/affinity between receptor (DNA) and
ligand (1,2,3-triazole compounds). After using vina software, the
output file was opened in PyMOL to carry out the molecular dock-
ing, virtual screening and binding site analysis and to get an image
of interaction and the bond length of the hydrogen bonds between
DNA and 1,2,3- triazole compounds.(Table 2)
Microwave procedure: Alkyne
2 (1 mmol), copper sulfate
(0.10 g) and sodium ascorbate (0.15 g) in water (10 mL) and an ap-
propriate azide (1 mmol) and DMSO (10 mL) were placed in shut
borosilicate glass container fitted with a silicone cap and open to
irradiation for 3–8 min using a microwave reactor. The reaction
was managed as defined in the conventional procedure outlined
earlier to give the same click products 4a-c, 6a-c and 8a-j.
The characterization of the compounds is given in supplemen-
tary information
4.3. DNA binding study
DNA binding study is one of the significant tools to assess
the activities of the newly synthesized molecules. It is because
the cancer is directly associated with DNA activities in the body.
The reported compounds interactions were determined with Ct-
DNA (at pH 7.4) in a solution of distilled water comprising tris-
(hydroxymethyl)-amino methane buffer (Tris, 10−2 M). Originally,
the concentration of newly prepared Ct-DNA solution was deter-
mined on UV–Vis absorption spectrophotometry at a wavelength
of 260 nm (ε = 6600 M−1cm−1) by knowing its absorbance [51].
The absorption spectra of newly prepared compounds at a fixed
concentration of (1.6 × 10−4 M) were taken separately and then
with the different amounts of DNA (1.5 × 10−5, 1.3 × 10−5 and
1.1 × 10−5) were added. The λmax was noted and the absorbance of
the mixture i.e. with each dissimilar solution of DNA and the com-
pounds was also dignified. To produce constant results, the experi-
ments were repeated five times (n = 5). The intrinsic DNA binding
coefficients (Kb) were resolved by Benesi-Hilderbrand equation (eq.
4.6) as by Wolfe et al. [52]. The equation is as follows:
Declaration of Competing Interest
The authors declare that they have no known competing finan-
cial interests or personal relationships that could have appeared
to influence the work reported in this paper. The authors declare
the following financial interests/personal relationships which may
be considered as potential competing interests: Design, click con-
ventional and microwave syntheses, DNA binding, docking and an-
ticancer studies of benzotriazole-1,2,3-triazole molecular hybrids
with different pharmacophores
Supplementary materials
Supplementary material associated with this article can be
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DNA / ε − ε = DNA / ε − ε + 1/K εb − εf
(1)
[
]
[
]
a
a
f
f
CRediT authorship contribution statement
Where, absorption coefficients, εa, εf, and εb represents
Aobs/[compound], extinction coefficient for the complex and
the extinction coefficient for the complex in the completely
bound form. The intrinsic binding coefficients for the dissimilar
compounds (Kb) were dogged by the division of slopes and the
intercepts of the plots of [DNA] / (εa - εf) vs [DNA].
Shaya Yahya Alraqa: Conceptualization, Methodology. Khalid
Alharbi: Methodology, Data curation. Ateyatallah Aljuhani:
Methodology, Software. Nadjet Rezki: Software. Mohamed Reda
Aouad: Methodology, Writing - original draft. Imran Ali: Method-
ology, Writing - review & editing.
4.4. Anticancer study
References
The anti-proliferative activities of the compounds were per-
formed with 2 lung cancer cell lines (A549 and H-1229). These
cells were sowed in a 96 well plate and incubated. At around 61–
71% confluence, the cells were preserved with concs. (400, 300,