Conclusions
Boc-Phe-Leu-Aib-OMe (II)
The peptide I adopts a remarkable type II b-turn structure
in solid state, stabilized by 10 atom intra-molecular hydrogen
bonding. These results demonstrate that the fragment Phe(1)-
Aib(2) is equally effective in inducing b-turn like structures in
tripeptides such as that of Ala(1)-Aib(2) and Leu(1)-Aib(2).
Interestingly, peptide II where the position of the last two
residues (Aib and Leu) of peptide I are interchanged, takes on
a fully extended b-strand like structure. These two peptides may
serve as subunits in the formation of supra-molecular b-sheet
Peptide II was synthesised following a similar procedure to that
for peptide I. Single crystals were grown from a methanol–
water mixture by slow evaporation and were stable at room
◦
25
◦
temperature. Mp = 148–150 C; [a]578 = −26 (c = 0.10 g per
100 ml; CH OH), (found: C, 62.97; H, 8.29; N, 8.88. C25
requires: C, 62.87; H, 8.23; N, 8.80%); IR (KBr): 3312, 3069,
3
H
39
N
3
O
6
−
1
1
2958, 1746, 1650, 1536 cm ; H NMR 500 MHz (CDCl ,
3
d
d ppm): 0.91 (C H of Leu, 6H, d), 1.41 (Boc-CH s, 9H, s), 1.51
(C H of Aib, 6H, s), 1.60–1.62 (C H and C H of Leu, 2H, m),
3.11 (C H of Phe, 2H, m), 3.70 (OCH
H, m), 4.36 (C H of Phe, 1H, m), 4.89 (Phe NH, 1H, d), 6.30
3
b
b
c
5–8
b
a
assemblage and amyloid-like fibrils.
3
, 3H, s), 4.26 (C H of Leu,
a
1
(
Leu NH, 1H, d), 6.69 (Aib NH, 1H, s), 7.19–7.31 (phenyl ring
Experimental
protons).
Synthesis of peptides
Crystal data
Peptide I.
The peptides were synthesised by conventional solution phase
procedures. The t-butyloxycarbonyl and methyl ester group were
used for amino and carboxyl protections and dicyclohexylcar-
bodiimide (DCC) or DCC 1-hydroxybenzotriazole (HOBT) as
coupling agents. Methyl ester hydrochlorides of Aib and Leu
were prepared by the thionyl chloride–methanol procedure. All
the intermediates obtained were checked for purity by thin layer
chromatography (TLC) on silica gel and used without further
purification. All of the final peptides were purified by column
chromatography using silica gel (100–200 mesh) as the stationary
phase and an ethyl acetate and petroleum ether mixture as the
eluent.
C
25
H
39
N
3
O
6
, M = 477.59, monoclinic, space
group P2
1
(No. 4), a = 8.889(1), b = 11.196(1), c = 13.856(1)
◦
3
−3
˚
˚
A, b = 92.09(1) , V = 1378.0(2) A , D
c
= 1.151 g cm , l =
−
1
˚
0
.82 cm , Z = 2, k = 0.71073 A, T = 198 K, 11 001 reflections
−1
˚
collected (± h, ± k, ± l), [(sinh)/k] = 0.66 A , 6281 independent
(
R
int = 0.032) and 4504 observed reflections [I ≥ 2r(I)], 324
2
refined parameters, R = 0.060, wR = 0.109.
Peptide II. (C H N O ) ·CH OH·H O, M = 1482.84,
2
5
39
3
6
3
3
2
monoclinic, space group C2 (No. 5), a = 47.011(1), b =
◦
3
13.325(1), c = 14.106(1) A˚ , b = 95.26(1) , V = 8799.1(9) A˚ ,
−
3
−1
˚
D
c
= 1.119 g cm , l = 0.81 cm , Z = 4, k = 0.71073 A, T =
1
98 K, 35 335 reflections collected (± h, ± k, ± l), [(sinh)/k] =
−1
Boc-Phe-Aib-Leu-OMe (I)
˚
0.65 A , 18 476 independent (Rint = 0.045) and 12 183 observed
Boc-Phe-Aib-OMe (1). Boc-Phe-OH (1.33 g, 5 mmol) was
dissolved in dimethylformamide (DMF, 3 mL). Aib-OMe
2
reflections [I ≥ 2r(I)], 976 refined parameters, R = 0.067, wR =
0.155.†
(
0.59 g, 5 mmol) obtained from its hydrochloride was added,
followed by DCC (1.0 g, 5 mmol). The reaction mixture
was stirred at room temperature for 3 days. The precipitated
dicyclohexylurea (DCU) was filtered and diluted with ethyl
acetate (80 mL). The organic layer was washed with an excess
Acknowledgements
A. D. is grateful to the UGC, New Delhi for offering her a Junior
research Fellowship. We are thankful to UGC, New Delhi and
the University of Calcutta for providing financial support.
of water, 1 N HCl (3 × 30 mL), 1 M Na
0 mL) and again with water. The solvent was then dried over
anhydrous Na SO and evaporated in vacuo, giving a light yellow
2
CO
3
solution (3 ×
3
2
4
gum. Yield: 1.46 g (80.0%).
References
1
2
C. M. Venkatachalam, Biopolymers, 1968, 6, 1425.
(a) J. S. Richardson, Adv. Protein Chem., 1981, 34, 167; (b) P. N.
Lewis, F. A. Momany and H. A. Scheraga, Biochim. Biophys. Acta.,
1973, 303, 211.
Boc-Phe-Aib-OH (2). Peptide 1 (0.84 g, 2.3 mmol) was
dissolved in methanol (10 mL) and 4 N NaOH (3 mL) was
added. The reaction mixture was stirred at room temperature for
2b
ꢀ
ꢀ
2
days. The progress of the reaction was monitered by TLC. After
3 Lewis et al. classified b-turns into 10 distinct types (I, I , II, II , III,
2a
ꢀ
completion of the reaction the methanol was evaporated. The
residue obtained was diluted with water and washed with
diethylether. The aqueous layer was cooled on ice, neutralised
using 2 N HCl and extracted with ethyl acetate. The solvent was
evaporated in vacuo to give a yellow gum. Yield: 0.63 g (78.0%).
III , IV, V, VI and VII), while Richardson later reclassified b-turns
ꢀ
ꢀ
into 6 distinct types (I, I , II, II , VIa and VIb) and a random category
IV).
(a) C. Mattos, G. A. Petsko and M. Karplus, J. Mol. Biol., 1994, 238,
(
4
5
7
2
33; (b) C. M. Wilmont and J. M. Thornton, J. Mol. Biol., 1988, 203,
21; (c) W. Kabsch and C. Sander, Biopolymers, 1983, 22, 2577.
S. K. Maji, D. Haldar, M. G. B. Drew, A. Banerjee, A. K. Das and
Boc-Phe-Aib-Leu-OMe (I). Peptide 2 (0.35 g, 1 mmol)
was dissolved in DMF (4 mL). Leu-OMe obtained from its
hydrochloride (0.26 g, 2 mmol) was added, followed by DCC
A. Banerjee, Tetrahedron, 2004, 60, 3251.
6 A. Banerjee, S. K. Maji, M. G. B. Drew, D. Haldar and A. Banerjee,
Tetrahedron Lett., 2003, 44, 335.
7
8
S. K. Maji, S. Malik Michael, G. B. Drew, A. K. Nandi and A.
Banerjee, Tetrahedron Lett., 2003, 44, 4103.
(
0.2 g, 1 mmol) and HOBT (0.14 g). The reaction mixture was
stirred at room temperature for 5 days. The work up of the
reaction was carried out as in the case of 1. Yield: 0.36 g (76.0%).
Single crystals were grown from a methanol–water mixture by
slow evaporation and were stable at room temperature. Mp =
(a) S. K. Maji, M. G. B. Drew and A. Banerjee, Chem. Commun.,
2
001, 1946; (b) S. K. Kundu, P. A. Mazumdar, A. K. Das, V. Bertolasi
and A. Pramanik, J. Chem. Soc., Perkin Trans. 2, 2002, 1602; (c) S. K.
Maji, D. Haldar, A. Banerjee and A. Banerjee, Tetrahedron, 2002, 58,
8695.
◦
25
◦
1
(
16–118 C; [a] = −21 (c = 0.10 g per 100 ml; CH
3
OH),
requires: C, 62.87;
H, 8.23; N, 8.80%); IR (KBr): 3376, 3315, 2957, 1697, 1660,
5
78
9
(a) S. B. Prusiner, Science, 1997, 278, 245; (b) S. B. L. Ng and
A. J. Doig, Chem. Soc. Rev., 1997, 26, 425; (c) G. Tubes, Science,
found: C, 62.95; H, 8.28; N, 8.85. C25
H
39
N
3
O
6
1
996, 271, 1493; (d) R. Baumeister and S. Eimer, Angew. Chem., Int.
−
1
1
d
1
531 cm ; H NMR 500 MHz (CDCl
3
, d ppm): 0.94 (C H of
Leu, 6H, m), 1.40 (C H of Aib, 6H, s), 1.43 (Boc-CH s, 9H, s),
.58 (C H and C H of Leu, 2H, m), 3.07 (C H of Phe, 2H, d),
Ed., 1998, 37, 2978; (e) T. S. Burkoth, T. L. S. Benzinger, V. Urban,
b
3
b
c
b
1
3
(
a
.70 (−OCH
3
, 3H, s), 4.15–4.19 (C H of Leu, 1H, m), 4.53–4.57
†
CCDC reference numbers 252275 and 255975. See http://www.
rsc.org/suppdata/ob/b4/b415455j/ for crystallographic data in .cif or
other electronic format.
a
C H of Phe, 1H, q), 5.01 (Phe NH, 1H, d), 6.14 (Aib NH, 1H, s),
6
.93 (Leu NH, 1H, d), 7.21–7.30 (phenyl ring protons).
6
6 4
O r g . B i o m o l . C h e m . , 2 0 0 5 , 3 , 6 6 1 – 6 6 5