Anti-Helicobacter pylori activity of xanthone derivatives
K Klesiewicz et al
8
1
3
-(2-Hydroxy-3-(propan-2-ylamino)propoxy)-5-methyl-9H-xanthen-9-one
58.26; H, 5.62; N, 3.40. Found: C, 58.07; H, 6.13; N, 3.41. H NMR (DMSO-d6,
+
(
compound 1) was obtained as a white solid (yield 65%), m.p. 126–127 °C.
300 MHz) δ (p.p.m.): 8.50 (bs, 2H, -NHH ), 8.19 (d, J = 8.4, 1H, H-8), 7.80
Anal calcd for C H NO Cl: C, 63.57; H, 6.40; N, 3.71. Found: C, 63.52; H, (d, J = 1.8, 1H, H-5), 7.76 (dd, J = 8.1, J = 1.5, 1H, H-1), 7.60 (dd, J = 8.0,
2
0
24
4
1
6
.70. N, 3.65. H NMR (CDCl3, 300 MHz): δ (p.p.m.) 8.25 (dd, J = 6.8, J = 2.6,
J = 1.2, 1H, H-3), 7.55 (dd, J = 8.7, J = 2.1, 1H, H-7), 7.42 (t, J = 8.1, 1H, H-2),
.92 (bs, 1H, -OH), 4.26 (bs, 3H, = CH-OH, Ar-O-CH2-), 3.40-3.06 (m, 2H,
CH2-N-), 1.32 (s, 9H, -(CH3)3). RF = 0.16 (methanol/ethyl acetate (1/1)).
-Chloro-5-(2-hydroxy-3-(1-hydroxy-3-methylbutan-2-ylamino)propoxy)-
H-xanthen-9-one (compound 16) was obtained as a white solid (yield 70%),
1
H, H-1), 8.17 (dd, J = 8.0, J = 1.8, 1H, H-8), 7.54 (dd, J = 7.2, J = 1.8, 1H,
5
H-6), 7.29-7.23 (m, 3H, H-4, H-2, H-7), 7.00-6.95 (m, 2H,-OH, -NH-),
.14-4.03 (m, 3H, Ar-O-CH2-, =CH-OH), 2.94 (dd, J = 12.1, J = 3.8, 1H,
-
4
3
-CHH-NH-), 2.85 (qu, J = 6.2, 1H, = CH-), 2.76 (dd, J =12.2, J = 7.6, 1H,
-CHH-NH-), 2.55 (s, 3H, -CH3), 1.11 (d, J = 6.2, 6H, (-CH3)2). RF = 0.16
(methanol).
9
m.p. 133-135 °C. Hydrochloride of compound 16: Anal calcd for
C21H25O5NCl2: C, 57.02; H, 5.70; N, 3.17. Found: C, 56.91; H, 6.06; N,
3
-(2-Hydroxy-3-(prop-2-en-1-ylamino)propoxy)-5-methyl-9H-xanthen-9-
1
+
3
.14. H NMR (DMSO-d , 300 MHz): δ (p.p.m.) 8.77 (bs, 1H, -NHH -), 8.37
6
one (compound 2) was obtained as a white solid (yield 68%), m.p. 94–96 °C.
Anal calcd for C20H21O4N: C, 70.78; H, 6.24; N, 4.13. Found: C, 70.61; H, 6.03;
N, 4.08. H NMR (CDCl , 300 MHz): δ (p.p.m.) 8.25 (dd, J = 6.4, J = 2.8,
+
(
(
(
bs, 1H, -NHH -), 8.18 (d, J =8.5, 1H, H-8), 7.83 (d, J = 2.1, 1H, H-5), 7.75
dd, J = 8.1, J = 1.4, 1H, H-1), 7.59 (dd, J = 8.1, J = 1.4, 1H, H-3), 7.54
dd, J = 8.5, J =2.1, 1H, H-7), 7.41 (t, J = 8.1, 1H, H-2), 5.96 (d, J = 4.4, 1H,
1
3
1
H, H-1), 8.17 (dd, J = 8.0, J = 1.8, 1H, H-8), 7.54 (dd, J = 8.0, J = 1.8, 1H,
4
CH-OH), 5.13 (bs, 1H, -CH -OH), 4.30-4.19 (m, 3H, 4CH-, Ar-O-CH - ),
2
2
H-6), 7.30-7.23 (m, 3H, H-4, H-4, H-7), 7.00-6.95 (m, 2H, -OH, -NH), 5.82-
3.61 (t, J = 6.3, 2H, -CH2-OH), 3.26 (bs, 1H, -CHH-NH-, overlap with signal
6
.00 (m, 1H, -CH= ), 5.22 (ddd, J = 16.9, J = 3.3, J = 1.3, 1H, = CoHH
from H2O in DMSO), 3.07 (bs, 1H, -CHH-NH-), 1.89-1.77 (m, 2H, 4CH-
(trans)), 5.14 (ddd, J = 10.5, J = 3.3, J = 1.3, 1H, =CoHH (cis)), 4.17-4.09
CHo), 1.34 (d, J = 1.3, 6H, (-CH3)2). RF = 0.13 (methanol).
(
m, 3H, Ar-O-CH2-, = CH-OH), 3.35-3.30 (m, 2H, = CH-CH2-NH- ),
3-Chloro-5-(3-(1-hydroxy-2-methylpropan-2-ylamino)propoxy)-9H-
2
.97-2.76 (m, 2H, -CH2-), 2.55 (s, 3H, -CH3). RF = 0.29 (methanol/ethyl
acetate (1/1)).
-(3-(2-Methoxybenzylamino)-2-hydroxypropoxy)-9H-xanthen-9-one
compound 6) was obtained as a white solid (yield 75%), m.p. 138–140 °C. H
NMR (CDCl3, 300 MHz): δ (p.p.m.) 8.33 (dd, J = 8.2, J = 1.5, 1H, H-8), 7.93 (d, J = 8.5 Hz, 1H, H-8), 7.89 (dd, J =7.4, J = 2.1, 1H, H-1), 7.65 (d, J = 2.1,
xanthen-9-one (compound 19) was obtained as a white solid (yield 60%), m.p.
51–153 °C. Anal calcd for C20H23O4NCl2: C, 58.26; H, 5.62; N, 3.40. Found:
C, 58.25; H, 6.25; N, 3.34. 1H NMR (CDCl , 300 MHz): δ (p.p.m.) 8.27
1
4
1
(
3
(
(
7
t, J = 4.6, 1H, H-2), 7.70 (ddd, J = 8.5, J = 7.1, J = 1.5, 1H, H-6), 7.45 1H, H-5), 7.36 (dd, J = 8.5, J = 2.1, 1H, H-7), 7.29 (d, J = 7.4, 1H, H-3), 7.27
dd, J = 8.5, J = 0.7, 1H, H-5), 7.38 (ddd, J = 8.2, J = 7.1, J =0.7, 1H, H-7),
(m, 1H, H-2), 4.26 (t, J = 6.3, 2H, Ar-O-CH -), 3.33 (s, 2H, -CH -OH), 2.82
.28 (d, J =4.6, 2H, H-1, H-7), 7.26-7.22 (m, 2H, H-3’, H-4’), 6.92 (td, J = 7.7,
2
2
2 2 2 2
(t, J = 6.3, 2H, -CH -NH-), 2.08 (qu, J = 6.3, 2H, -CH -CH -CH -), 1.50
J = 1.0, 1H, H-5’), 6.87 (d, J =7.7, 1H, H-6’), 4.25-4.15 (m, 3H, -CH= ,
(bs, 2H, -NH-, -OH), 1.11 (s, 6H, (-CH ) ). R = 0.07 (methanol).
3 2 F
Ar-O-CH -), 3.94-3.83 (m, 2H, -NH-CH -Ar), 3.80 (s, 3H, -O-CH ),
2
2
3
3
.00–2.85 (m, 2H, -CH2-NH-). Hydrochloride of compound 6: Anal calcd
Microbiology
for C24H24O5NCl: C, 65.23; H, 5.47; N, 3.17. Found: C, 64.62; H, 5.58; N, 3.15.
The preliminary assay of antimicrobial activity of the 20 newly synthesized
xanthone derivatives against selected representative bacterial strains were
conducted. Antimicrobial activity was tested in vitro by the Kirby–Bauer
method (agar disc-diffusion method).33,34 This method was used for qualitative
as well as quantitative testing.
The first step of the microbiological examination was the qualitative testing.
The aim of this step was to select the compounds with the strongest
anti-H. pylori activity. The activity of 19 compounds was tested to selected
H. pylori strains. S. aureus and E. coli strains were used as controls.
The second step of the microbiological examination consisted of quantitative
testing that aimed to assess the MIC value of the compound with the strongest
anti-H. pylori activity.
RF =0.65 (methanol:ethyl acetate (1:1)).
4
-(3-(3,4-Methoxyphenyl)ethylamino-2-hydroxypropoxy)-9H-xanthen-9-
one hydrochloride (compound 7) was obtained as a white solid (yield 75%), m.
p. 187–188 °C. Anal calcd for C26H28O6NCl: C, 64.26; H, 5.81; N, 2.88. Found:
1
C, 64.06; H, 6.19; N, 2.88. H NMR (DMSO-d , 300 MHz): δ (p.p.m.) 8.65
6
+
(
bs, 2H, -NHH -), 8.19 (dd, J =8.0, J = 1.5, 1H, H-8), 7.88 (ddd, J = 8.6,
J = 6.9, J = 1.5, 1H, H-6 ), 7.76 (dd, J = 8.0, J = 1.5, 1H, H-1), 7.69 (dd, J = 8.6,
J = 1.0, 1H, H-5), 7.57 (dd, J = 8.0, 1.5 Hz, 1H, H-3), 7.49 (ddd, J =8.0, J = 6.9,
J = 1.0, 1H, H-7), 7.39 (t, J = 8.0, 1H, H-2), 6.86 (d, J = 8.2, 1H, H-5’), 6.84
(
4
d, J = 2.1, 1H, H-2’), 6.75 (dd, J = 8.2, J = 2.1, 1H, H-6’), 5.97 (bs, 1H, -OH),
.36-4.28 (m, 1H, -CH=), 4.26-4.17 (m, 2H, Ar-O-CH2-), 3.72 (s, 3H,
-
O-CH3), 3.69 (s, 3H, -O-CH3), 3.27-3.10 (m, 4H, -CH2-NH-CH2-), 2.86-2.95
Microbiological examination for the antibacterial activity of 20 xanthone
derivatives against representative bacterial strains was carried out in the
Department of Pharmaceutical Microbiology, Faculty of Pharmacy, Jagiellonian
University Medical College in Krakow, Poland.
(
m, 2H, -CH -Ar). R = 0.15 (methanol).
2
F
4
-(3-(4-(2-Fluorophenyl)piperazin-1-yl)-2-hydroxypropoxy)-9H-xanthen-9-
one dihydrochloride (compound 9) was obtained as a white solid (yield 70%),
m.p. 224–226 °C. Anal calcd for C26H27O4N2Cl2F: C, 59.89; H, 5.22; N, 5.38.
Found: C, 59.51; H, 5.18; N, 5.17. H NMR (DMSO-d , 300 MHz): δ (p.p.m.)
1
J = 6.9, J = 1.8, 1H, H-6), 7.76 (dd, J = 8.2, J = 1.3, 1H, H-1, H-5), 7.60 (dd,
J = 8.2, J = 1.3, 1H, H-3), 7.50 (ddd, J = 8.0, J = 6.9, J =1.3, 1H, H-7), 7.39
1
6
Bacterial strains. Twelve representative bacterial strains were used in the
microbiological examination. Seven clinical H. pylori strains were included in
the study. Strains were isolated from the endoscopic biopsy specimens of gastric
mucosa from dyspeptic patients who applied to the Falck Medycyna Outpatient
Clinic of Gastroenterology (Krakow, Poland). Isolation of H. pylori strains from
biopsy samples as well as antibacterial susceptibility testing to clarithromycin
and metronidazole with the use of strips impregnated with antimicrobial agents
gradients (E-test, bioMérieux, Lyon, France) were performed as previously
described by Karczewska et al.35
+
0.55 (bs, 1H-NH -), 8.20 (dd, J = 8.0, J = 1.8, 1H, H-8), 7.90 (ddd, J = 8.2,
(t, J = 8.2, 1H, H-2), 7.00-7.21 (m, 4H, H-Ph), 6.02-6.16 (m, 1H, -OH), 4.57
(bs, 1H, -CH= ), 4.23 (d, J = 4.6, 2H Ar-O-CH2-), 3.84-3.12 (m, 10H,
(-N-CH2-)5). RF = 0.86 (methanol/ethyl acetate (1/1)).
3
-Chloro-5-(2-hydroxy-3-(propan-2-ylamino)propoxy)-9H-xanthen-9-one
(
compound 12) was obtained as a white solid (yield 72%), m.p. 169–170 °C.
Anal calcd for C19H20O4NCl: C, 63.07; H, 5.57; N, 3.87. Found: C, 62.70; H,
5
.79; N, 3.51. RF = 0.23 (methanol/ethyl acetate 1/1). Hydrochloride of the
In addition, we used two H. pylori reference strains and single reference
compound 12: H NMR (DMSO-d , 300 MHz) δ (p.p.m.): 8.76 (bs, 2H, -NHH strains of S. aureus and E. coli.
1
6
+
)
, 8.18 (d, J = 8.4, 1H, H-8), 7.85 (d, J = 1.8, 1H, H-5), 7.74 (dd, J = 8.1,
Clinical strains were as follows:
J = 1.5, 1H, H-1), 7.59 (dd, J = 8.1, J =1.5, 1H, H-3), 7.54 (dd, J =8.6, J = 2.1,
H, H-7), 7.41 (t, J = 7.8, 1H, H-2), 5.96 (bs, 1H, -OH), 4.34 (bs, 1H, = CH-
1
- three H. pylori strains resistant to metronidazole: HP 125/180, HP 139/202
and HP 143/207;
OH), 4.24-4.22 (m, 2H, Ar-O-CH -), 3.40-3.06 (m, 3H, -CH -N-, -CH = ),
2
2
1
.28 (dd, J = 6.4, J =2.7, 6H, -(CH3)2).
3
- two H. pylori strains resistant to clarithromycin: HP 115/168 and HP
132/194;
- two double-resistant H. pylori strains (that is, combined resistance to
clarithromycin and metronidazole): HP 106/154 and HP 126/181.
-Chloro-5-(2-hydroxy-3-((2-methylpropan-2-ylamino)propoxy)-9H-
xanthen-9-one (compound 13) was obtained as a white solid (yield 70%), m.p.
54–155 °C. Hydrochloride of compound 13: Anal calcd for C H O NCl : C,
1
20
23
4
2
The Journal of Antibiotics