A.K. Sharma et al. / Journal of Photochemistry and Photobiology A: Chemistry 346 (2017) 401–410
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the previously conducted studies had indicated peak concentration
of the rearranged product-amine around 24–48 h.
to a solid which was used directly in the following step. A sample
obtained from the previous step (Int-3, 0.0357 mol) was added to a
solution of potassium hydroxide (2.36 g, 0.036 mol) in 75 mL of
methanol, stirred and heated to reflux for 18 h. The mixture was
evaporated to dryness, the residue was triturated with 500 mL
dichloromethane and filtered. The filtrate was evaporated to
dryness and purified by chromatography (silica, 5% acetone/
CH2Cl2) to afford 0.39 g of product that was approximately 72%
pure by HPLC; mp 151–155 ꢁC. A 70-mg sample of this material was
purified further and combined pure fractions afforded Amine-1
(14 mg) that was >97% pure by HPLC; mp 173–174 ꢁC. 1H NMR
2.5. Sample analysis
Samples were analyzed on a HPLC system equipped with a
WatersTM 600E multisolvent Delivery System, WatersTM Model
600 Pump, WatersTM 712 Satellite WISP Autosampler, Applied
Biosciences Model 785A Absorbance Detector, a Radiomatic A-515
TR Flo-One /
1 beta Radio-Chromatography Detector using Radio-
matic FLO-ONE software for Windows. HPLC Conditions: Column
[4.6 mm ꢃ 250 mm MacMod Ace C-18AR column maintained at
40 ꢁC], solvent flow 1.0 mL/min, with UV Detection at 254 nm, HPLC
gradient program utilized solvent A [H2O with 0.1% Formic Acid,
pH = 2.2] and solvent B [ACN with 0.1% Formic Acid]. The gradient
program for separation: Time zero started with 90% A, changing to
55%A over 20 min, then 35%A by 30 min followed by 25%A by
45 min. The two amines displayed baseline separation.
(DMSO-d6)
d 2.41(s, 3H), 3.88 (s, 3H), 3.95 (s, 3H), 7.96 (d, 1H,
J = 5 Hz), 8.20 (d, 1H, J = 5 Hz), 10.2 (s br, NH); HRMS (ESI-QTOF) m/z
[M+H+] calcd for C11H13N4O3S, 281.0708; found, 281.0701; MS2 (ESI
+) m/z 249.04 (100%), 206.04 (31%), 165.01 (23%). A definitive
structural confirmation was based on high resolution 2D-NMR
data which showed the correlation of proton at
d8.2 with its
neighboring carbons at 132.89 and 144.02 as displayed in Fig. 5.
Additional confirmation by 13C NMR added to the identification of
the structure.
NMR data were acquired on
a Bruker 600 MHz Avance
spectrometer using a TCI cryoprobe. Data were acquired on
Amine-2 on a 5.9 mg/0.6 mL DMSO-d6 sample at 40 ꢁC and data on
Amine-1 were acquired on a 5.1 mg/0.6 mL DMSO-d6 sample at
27 ꢁC. Acquisition parameters were identical for each sample with a
D1 of 2 s, 128 scans, 256 ꢃ1024 data points, Fourier transformed to
a 1 K ꢃ 2 K matrix.
2.7. Synthesis of methyl-2-(4-methoxy-6-methyl-1,3,5-triazin-2-yl-
amino)-3-thiophene carboxylate [Amine-2, Fig. 4]
Int-6 was prepared by dissolving 1.57 g (10 mmol) of methyl 2-
aminohthiophene-3-carboxlyate (Int-5, Combi-Blocks, Inc. OS-
7483, CAS 4651-81-4) in dioxane (12 mL) and adding 2.0 g (Int-4,
11 mmol) 2,4-dichloro-6-methoxy-1,3,5-triazine [12] and 2.0 g
(I13.4 mmol) of N,N-diethylaniline. The entire mixture was stirred
and warmed to 80 ꢁC under nitrogen for 6 h resulting in a
suspension that was cooled and diluted with ethyl acetate. The
EtOAc solution was washed with 1N HCl. The organic layer was
washed with brine, dried with Na2SO4 and evaporated to obtain an
amber colored resin (3.1 g). This material was triturated with warm
diethyl ether and then with an equal volume of hexanes to obtain a
solid, which was filtered to afford 2.02 g (67%) of a tan powder.
The mass spec data was acquired using an Agilent 6538 QTOF
mass spectrometer equipped with a dual electrospray ionization
source. The data was acquired in positive ion mode with a mass
range of 100–1000 amu for MS1, and 25–600 amu for MS2. The
isolation width and collision energy for the MS2 experiments were
1.3 amu and 20 V respectively. Nitrogen was used as the collision
cell gas with a pressure of 20 psi. Electrospray Source Parameters
were as follows: Gas temperature 300 ꢁC, drying gas 13 L/min,
Nebulizer: 45 psig, Fragmentor 93 V, and Skimmer 47.
2.6. Synthesis of methyl-3-(4-methoxy-6-methyl-1,3,5-triazin-2-yl-
amino)-2-thiophene carboxylate [Amine-1, Fig. 3]
HPLC analysis of this product [Int-6] showed
a purity of
approximately 70% (220 nm). LC/MS of the main component
A mixture of 5.85 g (0.0357 mol) 2,4-dichloro-6-methyl-1,3,5-
triazine [11] (CAS 1973-04-2, Int-1) and 5.61 g (0.0357 mol) of
methyl 2-aminothiophene-2-carboxylate (CAS 22888-78-4, Int-2)
was stirred at ambient temperature and 4.97 g (0.036 mol) of
potassium carbonate was added. The suspension was stirred for
1 day at ambient temperature; solids were removed by filtration,
rinsed well with dichloromethane and the filtrate was evaporated
exhibited a mass spectrum [M+H+ of 301.01] and its 1H NMR
[(DMSO-d6)
d 3.86 (s, 3H), 4.03 & 4.09 (singlets, 3H total, 2
rotamers), 7.18 (d, 1H), 7.26 (d,1H), 11.0 (NH)], which were
consistent with the structure.
A 0.50 g (1.67 mmol) sample of the product from the previous
step and 1.62 g (5.0 mmol) of cesium carbonate were stirred in dry
dioxane (30 mL) under nitrogen atmosphere for 10 min.
Fig. 3. Synthesis of Methyl-3-(4-methoxy-6-methyl-1,3,5-triazin-2-yl-amino)-2-thiophene carboxylate [Amine-1].