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during protease treatment with trypsin and pronase.[12] cSN50
is the first nuclear-import inhibitor that has shown importin a
isoform specificity, binding with nanomolar affinity to impor-
tin a5 and only weakly to the other importin a isoforms.[14] It
also represents the first example of targeting the nuclear
import of a transcription factor at the level of NLS
recognition.[13] To date, there has been no use reported of
the technique of stapling[15] to stabilize these intrinsically
disordered NLS peptides. The aim of this work was to develop
constrained peptide-based inhibitors that target the HNF1b–
importin a protein–protein interaction (PPI) and inhibit the
activity of HNF1b. The proposed nuclear import targeting
approach for the HNF1b–importin a PPI is summarized in
Figure 1. The constrained peptide competes with HNF1b
protein for importin a binding in the cytoplasm and is
imported into the nucleus.
PPIs are crucial for many biological processes in the living
cell and are responsible for the majority of cellular func-
tions.[17] Interestingly, it has been predicted that up to 49% of
transcription factor sequences are intrinsically disordered.[18]
Intrinsically disordered protein domains (IDD) do not
assume well-defined folded structures, but rapidly intercon-
vert between different conformations.[19] An example of IDDs
are targeting motifs such as NLSs.[7] Because IDDs have
unique binding properties, conventional drug-discovery strat-
egies are less applicable for finding inhibitors, and novel
strategies such as constrained-peptide-based approaches may
be required.[19,20] Peptide-based drugs are attractive alterna-
tives to small-molecule inhibitors owing to their high potency,
specificity, and therapeutic safety.[21] Compared to protein-
based drugs, they are less likely to initiate an immune
response and their synthesis is more economical and less time
consuming.[22] Synthetic macrocylization through linking of
the side chains of two non-proteogenic amino acid residues
allows peptides to be constrained in their bioactive confor-
mation, thereby resulting in less entropy lost upon binding.[23]
In addition, the rate of proteolytic degradation of constrained
peptides is often lower than that of their linear counter-
parts.[24] Current challenges in the field include the design of
cell-permeable constrained peptides.
Our goal was to stabilize the HNF1b NLS peptide, which
binds to importin a, in its binding conformation to give
a constrained peptide with increased permeability whilst
retaining potency. The crystal structure of the HNF1b NLS
peptide bound to mImportin a1 DIBB (PDB ID: 5K9S),
which has the autoinhibitory importin b binding (IBB)
domain deleted, was used to aid the design of the constrained
peptide.[6c]
We first performed cell proliferation experiments to
validate the potential of HNF1b as a therapeutic target for
the treatment of CCC. The effect on cell proliferation upon
HNF1b knockdown was studied in five high- and low-HNF1b-
expressing CCC cell lines and one high-grade serous ovarian
cancer (HGSOC) control cell line (PEO1), which does not
express HNF1b. All of the CCC lines apart from JHOC7,
OVISE, and PEO1 proliferated less upon small hairpin RNA
(shRNA)-mediated HNF1b knockdown (Figure 2). In the
Figure 2. Relative proliferation of PEO1, JHOC5, JHOC7, JHOC9,
OVISE, and SKOV3 CCC lines with n=4 after HNF1b shRNA knock-
down. The mean is shown, with error bars showing the SEM.
Statistical significance was assessed with multiple t-tests and the
ˇ
Holm–Sꢁdꢂk method with a=5%. Optical densities (ODs) are given
relative to their respective non-target knockdown OD value and back-
ground OD was subtracted. Only shRNA knockdown clone 583 at 96 h
was considered here. * indicates P<0.02.
JHOC5, JHOC9, and SKOV3 cell lines, this reduction was
found to be statistically significant, with P < 0.02. These
results are in agreement with previous results by Tomassetti
et al. and Tsuchiya et al.,[2b,25] but we provide a more exten-
sive investigation, with five cell lines and five time points. This
work further validates HNF1b as a target for CCC.
Because the binding affinity of cargo proteins for their
carrier is an important factor for efficient nuclear import,[26] it
was imperative to quantify the dissociation constant (Kd) of
the HNF1bDBD with its nuclear import protein (importin a) by
isothermal titration calorimetry (ITC; see Figure S4 in the
Supporting Information for ITC curve and binding parame-
ters). The tighter binding (Kd = 625 nm) that was observed
with the HNF1bDBD protein compared to the much shorter
Figure 1. Proposed scheme for targeting the nuclear import of HNF1b
through the HNF1b–importin a PPI: 1) The IBB domain of importin a
binds to importin b to free up the NLS-binding sites on importin a.
2) HNF1b NLS recognition by a heterodimeric complex composed of
importin a and importin b, 3,4) To enable HNF1b to be imported in
the nucleus, the HNF1b NLS has to bind to the importin a–b
heterodimer. The constrained peptide competes for this binding,
thereby impairing the import of HNF1b. 5) Release of the constrained
peptide through RanGTP binding to importinb. Reproduced and
modified from Kobe et al.[16]
2
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Angew. Chem. Int. Ed. 2016, 55, 1 – 7
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