Journal of Medicinal Chemistry
Article
N-Chloroacetyl 3-Amino-3-methylbutyric Acid (11b, 76 mg,
N-Chloroacetyl p-Aminomethylbenzoic Acid-Asp-(OMe) (12 c,
2
33
1
1
3
9%). Colorless oil. H NMR (DMSO-d ) δ 12.35 (s, D O exch,
438 mg, 59%). Colorless solid. H NMR (CDCl ) δ 7.76 (d, J = 8.5
6
2
3
1
H), 7.93 (s, D O exch, 1H), 3.97 (s, 2H), 2.66 (s, 2H), 1.33 (s, 6H).
Hz, 2H), 7.34 (d, J = 8.5 Hz, 2H), 7.03 (d, D O exch, J = 8.0 Hz, 1H),
2
2
1
3
C NMR (DMSO-d ) δ 172.1, 165.2, 51.5, 43.3, 42.9, 26.5. HRMS
7.10 (s, D
O exch, 1H), 5.03 (m, 1H), 4.53 (d, J = 6.0 Hz, 2H), 4.10
2
6
+
(
EI) m/z; found 193.0507 [M] (calcd 193.0506 for C H ClNO ).
(s, 2H), 3.78 (s, 3H), 3.69 (s, 3H), 3.13 (dd, J = 17.0, 4.5 Hz, 1H),
7
12
3
+
13
LRMS (EI) m/z (rel abundance): 193 [M ] (30), 178 (21), 160 (65),
2.97 (dd, J = 17.0, 4.5 Hz, 1H). C NMR (CDCl ) δ 171.6, 171.1,
3
134 (91), 94 (100).
166.4, 166.0, 141.5, 132.9, 127.7, 127.6, 52.9, 52.1, 48.8, 43.3, 42.5,
+
N-Chloroacetyl p-Aminomethylbenzoic Acid (11c, 1.46 g, 64%).
35.9. HRMS (ESI) m/z: found 371.1011 [M + H] (calcd 371.1010
1
for C H ClN O ).
Colorless solid. H NMR (DMSO-d ) δ 11.78 (s, D O exch, 1H), 8.93
16 20
2
6
6
2
Finkelstein Reaction of N-Chloroacetyl Derivatives 8a−8c,
12a and 12c. NaI (450 mg, 3 mmol) was added to separate solutions
of N-chloroacetyl derivatives (8a, 222 mg; 8b, 207 mg; 8c, 242 mg;
12a, 351 mg; 12c, 371 mg; 1 mmol each) in acetone (8 mL, 8a−8c,
12a; 15 mL, 12c). The mixtures were stirred for 18 h at RT, the
acetone was evaporated, and separate residues were partitioned
between 10% solution of Na SO (40 mL) and EtOAc (2 × 30 mL).
(
t, D O exch, J = 6.0 Hz, 1H), 7.90 (d, J = 8.0 Hz, 2H), 7.38 (d, J = 8.0
2
13
Hz, 2H), 4.38 (d, J = 6.0 Hz, 2H), 4.16 (s, 2H). C NMR (DMSO-d6)
δ 167.3, 166.3, 144.0, 129.7, 129.5, 127.3, 42.7, 42.3. HRMS (EI) m/z;
found 227.0345 [M] (calcd 227.0349 for C H ClNO ). LRMS (EI)
m/z (rel abundance): 227 [M ] (24), 192 (100), 151 (22), 135 (26),
1
+
10
10
3
+
07 (27).
Conjugation of Carboxylic Acids 11a−11c with L-Asp-
2
3
Combined organic extracts were dried and concentrated. The residues
(
OMe) ·HCl. NHS (136 mg, 1.18 mmol, acid 11a; 62 mg, 0.54
2
were either subjected to FCC on 30 g of SiO , eluting 9a with
mmol, acid 11b) was added to separate stirred solutions of N-
chloroacetyl ω-aminocaproic acid (11a, 246 mg, 1.18 mmol) and N-
chloroacetyl 3-amino-3-methylbutyric acid (11b, 105 mg, 0.54 mmol)
in dry THF (10 mL, acid 11a; 4 mL, acid 11b). The solutions were
cooled to 0 °C, followed by the addition of DCC (317 mg, 1.54 mmol,
acid 11a; 145 mg, 0.7 mmol, acid 11b) and subsequent stirring for 20
2
hexanes/acetone (5:1), eluting 9b with hexanes/acetone (2:1), eluting
1
2a with CH Cl /MeOH (98:2), or crystallized from acetone/hexanes
2 2
(
9c) or CH Cl /hexanes (12c). Evaporation of eluates afforded N-
2 2
iodoacetyl ω-aminocaproic acid methyl ester (9a), N-iodoacetyl 3-
amino-3-methylbutyric acid methyl ester (9b), and N-iodoacetyl ω-
aminocaproic acid-Asp-(OMe) (13a). The crystallizations were set
min at 0 °C. L-Asp-(OMe) ·HCl (246 mg, 1.24 mmol, acid 11a; 107
mg, 0.54 mmol, acid 11b) and Et N (330 μL, 2.36 mmol, acid 11a;
1
removed, and the mixtures were stirred for 18 h at RT. The mixtures
were diluted with CH Cl (50 mL, acid 11a; 20 mL, acid 11b) and
were washed with 1 M HCl (30 mL, acid 11a; 20 mL, acid 11b). The
aqueous phases were extracted with an additional amount of CH Cl2
2
2
aside for 3 h at −10 °C, and the crystals were filtered off, washed with
hexanes, and dried to leave N-iodoacetyl p-aminomethylbenzoic acid
methyl ester (9c) and N-iodoacetyl p-aminomethylbenzoic acid-Asp-
3
50 μL, 1.08 mmol, acid 11b) were added, the cooling baths were
(
OMe) (13c).
2
2
2
N-Iodoacetyl ω-Aminocaproic Acid Methyl Ester (9a, 241 mg,
1
7
3
1
4
7%). Colorless solid. H NMR (CDCl ) δ 6.17 (s, D O exch, 1H),
3
2
2
.70 (s, 2H), 3.68 (s, 3H), 3.28 (m, 2H), 2.33 (m, 2H), 1.66 (m, 2H),
(30 mL, acid 11a; 20 mL, acid 11b), and the combined organic
.55 (m, 2H), 1.38 (m, 2H). 13C NMR (CDCl ) δ 174.0, 167.0, 51.5,
3
extracts were dried and concentrated. The residues were subjected to
FCC on 30 g of SiO eluting 12a and 12b with CH Cl /MeOH
(
aminocaproic acid-Asp-(OMe) (12a) and N-chloroacetyl 3-amino-3-
methylbutyric acid-Asp-(OMe) (12b) containing small amount of
DCU, which was removed by dissolving the separate residues in ice-
cold acetone (ca. 5−10 mL) and filtering the insoluble DCU off by
using a Pasteur pipet with a cotton plug.
0.0, 33.7, 28.8, 26.1, 24.3, −0.4. HRMS (EI) m/z; found 313.0174
2
2
2
+
[
M] (calcd 313.0175 for C H INO ). LRMS (EI) m/z (rel
9
16
3
95:5). Evaporation of the eluates afforded N-chloroacetyl ω-
+
abundance): 313 [M ] (5), 240 (20), 112 (72), 72 (27).
2
N-Iodoacetyl 3-Amino-3-methylbutyric Acid Methyl Ester (9b,
2
1
2
1
56 mg, 86%). Colorless oil. H NMR (CDCl ) δ 6.43 (s, D O exch,
3
2
13
H), 3.71 (s, 3H), 3.64 (s, 2H), 2.73 (s, 2H), 1.45 (s, 6H). C NMR
(
CDCl ) δ 171.6, 166.4, 52.7, 51.7, 43.7, 26.6, −0.6. HRMS (EI) m/z;
3
+
found 299.0022 [M] (calcd 299.0018 for C H INO ). LRMS (EI)
m/z (rel abundance): 299 [M ] (47), 114 (100), 73 (38).
8
14
3
A stirred solution of N-chloroacetyl p-aminomethylbenzoic acid
+
(11c, 455 mg, 2 mmol) and L-Asp-(OMe) ·HCl (395 mg, 2 mmol) in
2
N-Iodoacetyl p-Aminomethylbenzoic Acid Methyl Ester (9c, 193
dry DMF (2 mL) was cooled to 0 °C, followed by the addition of N-
methylmorpholine (NMM, 990 μL, 9 mmol). A commercial solution
of T P in DMF (1.75 mL, 3 mmol) was the added dropwise over ca. 5
min. The mixture was stirred for 1 h at 0 °C and for 18 h at RT. The
mixture was then diluted with saturated NaHCO solution (50 mL)
and was extracted with EtOAc (3 × 30 mL). Combined organic extract
was washed with brine (4 × 50 mL), dried, and concentrated. The
residue was subjected to FCC on 40 g of SiO , eluting 12c with
CH Cl /MeOH (98:2) later replaced with CH Cl /MeOH (95:5).
1
mg, 58%). Colorless crystals; mp 142−144 °C. H NMR (CDCl ) δ
3
7
.97 (d, J = 8.0 Hz, 2H), 7.32 (d, J = 8.0 Hz, 2H), 6.78 (s, D O exch,
1H), 4.48 (d, J = 6.0 Hz, 2H), 3.90 (s, 3H), 3.74 (s, 2H). C NMR
2
13
3
(
CDCl ) δ 167.3, 166.7, 142.8, 130.0, 129.4, 127.4, 52.1, 43.9, −1.0.
3
+
3
HRMS (ESI) m/z: found 333.9952 [M + H] (calcd 333.9940 for
C H INO ).
11
13
3
N-Iodoacetyl ω-Aminocaproic Acid-Asp-(OMe) (13a, 252 mg,
2
1
2
57%). Colorless solid. H NMR (CDCl ) δ 6.66 (s, D O exch, 1H),
3 2
2
2
2
2
6.62 (d, D O exch, J = 11.5 Hz, 1H), 4.86 (m, 1H), 3.74 (s, 3H), 3.69
2
Evaporation of the eluate afforded N-chloroacetyl p-aminomethylben-
(s, 2H), 3.68 (s, 3H), 3.25 (m, 2H), 3.01 (dd, J = 17.0, 4.5 Hz, 1H),
2.84 (dd, J = 17.0, 4.5 Hz, 1H), 2.24 (m, 2H), 1.65 (m, 2H), 1.53 (m,
zoic acid-Asp-(OMe) (12c).
2
2H), 1.36 (m, 2H). 13C NMR (CDCl ) δ 172.7, 171.5, 171.2, 167.2,
N-Chloroacetyl ω-Aminocaproic Acid-Asp-(OMe) (12a, 276 mg,
2
3
1
6
6%). Colorless solid. H NMR (CDCl ) δ 6.68 (s, D O exch, 1H),
52.8, 52.0, 48.3, 39.9, 36.0, 35.9, 28.5, 25.9, 24.7, −0.4. HRMS (ESI)
3
2
+
6
.53 (d, D O exch, J = 8.0 Hz, 1H), 4.85 (m, 1H), 4.03 (s, 2H), 3.74
m/z: found 443.0664 [M + H] (calcd 443.0679 for C H IN O ).
2
14 24
2
6
(
s, 3H), 3.68 (s, 3H), 3.29 (m, 2H), 3.02 (dd, J = 17.0, 4.5 Hz, 1H),
N-Iodoacetyl p-Aminomethylbenzoic Acid-Asp-(OMe) (13 c, 384
2
1
2
2
5
.83 (dd, J = 17.0, 4.5 Hz, 1H), 2.23 (m, 2H), 1.65 (m, 2H), 1.55 (m,
mg, 83%). Colorless crystals; mp 127−129 °C. H NMR (CDCl ) δ
3
H), 1.36 (m, 2H). 13C NMR (CDCl ) δ 172.5, 171.5, 171.2, 165.8,
7.70 (d, J = 8.0 Hz, 2H), 7.32 (s, D O exch, 1H), 7.29 (d, J = 8.5 Hz,
3
2
2.7, 52.0, 48.3, 42.6, 39.5, 36.0 (2 × C), 28.9, 26.1, 24.8. HRMS (ESI)
2H), 7.06 (t, D O exch, J = 6.0 Hz, 1H), 5.04 (m, 1H), 4.46 (d, J = 6.0
2
+
m/z: found 351.1321 [M + H] (calcd 351.1323 for C H ClN O ).
Hz, 2H), 3.79 (s, 3H), 3.75 (s, 2H), 3.70 (s, 3H), 3.13 (dd, J = 17.5,
14
24
2
6
4.5 Hz, 1H), 2.97 (dd, J = 17.5, 4.5 Hz, 1H). 13C NMR (CDCl ) δ
N-Chloroacetyl 3-Amino-3-methylbutyric Acid-Asp-(OMe) (12b,
2
3
1
7
1
1
9 mg, 43%). Colorless oil. H NMR (CDCl ) δ 7.20 (s, D O exch,
171.6, 171.1, 167.5, 166.7, 141.9, 132.6, 127.6, 127.5, 52.9, 52.1, 48.9,
3
2
+
H), 6.70 (d, D O exch, J = 8.0 Hz, 1H), 4.87 (m, 1H), 4.07 (d, J =
43.6, 36.0, −0.9. HRMS (ESI) m/z: found 463.0360 [M + H] (calcd
2
5.0, 1H), 3.97 (d, J = 15.0, 1H), 3.76 (s, 3H), 3.70 (s, 3H), 3.04 (dd, J
463.0366 for C H IN O ).
16
20
2
6
=
17.0, 4.5 Hz, 1H), 2.82 (dd, J = 17.0, 4.5 Hz, 1H), 2.77 (d, J = 13.5,
N-Chloroacetyl-N′-Boc 1,4-Diaminobut-2-yne (20). A solution
13
1H), 2.55 (d, J = 13.5, 1H), 1.49 (s, 3H), 1.47 (s, 3H). C NMR
of but-2-yne-1,4-diol (17, 6.5 g, 75.5 mmol) in pyridine (11 mL) was
(
3
CDCl ) δ 171.4, 170.9, 170.2, 166.2, 53.2, 52.8, 52.1, 48.2, 46.0, 43.0,
5.9, 27.1 (2 × C). HRMS (ESI) m/z: found 337.1155 [M + H]
cooled to 0 °C, followed by a dropwise addition (over 1 h) of SOCl
(13.2 mL, 181.2 mmol). The cooling bath was removed, and the
3
2
+
37
(
calcd 337.1166 for C H ClN O ).
stirring continued for 2 h at RT. The mixture was then cooled to 0 °C
13
22
2
6
6
527
J. Med. Chem. 2015, 58, 6516−6532