The herringbone helix: A noncanonical folding in aromatic-aliphatic peptides

Article abstract of DOI:10.1021/ja074285s

Hybrid oligomeric sequences derived from both aliphatic and aromatic units are shown to adopt a folded conformation with an unprecedented architecture. Specifically, a δ-amino acid bearing an aliphatic amine-6-aminomethyl-2-pyridinecarboxylic (P)-was designed and synthesized as a flexible analogue of 6-amino-2-quinolinecarboxylic acid (Q). Oligomers P_n (n = 2, 4, 8) were first synthesized but show no sign of folding in solution in organic solvents, unlike the Q_n oligomers from which they are derived, which adopt particularly stable helical conformations. Hybrid oligomers (PQ)_n (n = 1, 2, 4) were also prepared and were shown to adopt a novel folded conformation in the solid state where PQ units arrange into two stacks at a 90° angle from each other. Comprehensive NMR studies demonstrate that in solution this peculiar organization coexists with a helical conformation resembling that of Q_n oligomers. Copyright