Journal of Medicinal Chemistry
Article
phase chromatography over the C18 column to give 27 as colorless oil
(180 mg, yield: 85%)
5.08 (m, 1H), 4.96 (dd, J = 11.0, 3.8 Hz, 1H), 4.55−4.28 (m, 2H),
3.66−3.44 (m, 2H), 2.97−2.84 (m, 2H), 2.84−2.72 (m, 1H), 2.55 (t, J
= 6.4 Hz, 2H), 2.53−2.40 (m, 1H), 2.27−2.10 (m, 2H), 2.04−1.87 (m,
5H), 1.78 (d, J = 12.3 Hz, 2H), 1.62−1.43 (m, 1H), 1.30−1.15 (m,
2H).
Reaction 3. HATU (13.3 mg, 1.2 equiv) and N,N-diisopropylethyl-
amine (0.026 mL, 0.15 mmol) were added to a solution of MI-1061 (20
mg, 0.029 mmol) in 0.5 mL DMF and stirred. After 10 min, 27 (0.35
mL, 0.1 M in DMSO) was added to the reaction. After 30 min, the
solvent was removed and the crude was dissolved in 3:1 MeOH/water,
acidified with TFA, and purified by reverse-phase preparative HPLC.
The purified fractions were combined, concentrated in vacuo, re-
dissolved in water, frozen, and lyophilized to give 13 (17.5 mg, yield:
68%) as a white powder.
(3′R,4′S,5′R)-6″-Chloro-4′-(3-chloro-2-fluorophenyl)-N-(4-((5-(2-
(2,6-dioxopiperidin-3-yl)-3-oxoisoindolin-5-yl)pent-4-yn-1-yl)-
carbamoyl)phenyl)-2″-oxodispiro[cyclohexane-1,2′-pyrrolidine-
3′,3″-indoline]-5′-carboxamide (17). 17 (15.4 mg, yield: 60% from
MI-1061) was obtained using the same synthetic strategy described for
MD-224 with 26e.
LC−MS(ESI) m/z (M + H)+:889.32; calcd for C48H44Cl2FN6O6 (M
+ H)+ 889.27; >98% purity.
LC−MS(ESI) m/z (M + H)+: 893.19; calcd for C48H48Cl2FN6O6
(M + H)+: 893.30; >98% purity.
1H NMR (400 MHz, MeOH-d4): δ 7.83−7.76 (m, 2H), 7.76−7.68
(m, 2H), 7.63−7.57 (m, 3H), 7.54 (dd, J = 8.3, 2.5 Hz, 1H), 7.49 (dd, J
= 7.9, 1.0 Hz, 1H), 7.41−7.34 (m, 1H), 7.19 (t, J = 8.0 Hz, 1H), 7.12
(dd, J = 8.2, 1.9 Hz, 1H), 6.80 (d, J = 1.9 Hz, 1H), 5.36 (d, J = 10.9 Hz,
1H), 5.15 (ddd, J = 13.3, 5.1, 1.5 Hz, 1H), 4.97 (d, J = 11.0 Hz, 1H),
4.57−4.34 (m, 2H), 3.53 (t, J = 6.9 Hz, 2H), 2.90 (ddd, J = 15.3, 10.3,
3.6 Hz, 2H), 2.78 (ddd, J = 17.6, 4.5, 2.3 Hz, 1H), 2.59−2.43 (m, 3H),
2.26−2.12 (m, 2H), 2.04−1.86 (m, 5H), 1.78 (d, J = 11.9 Hz, 2H), 1.53
(dd, J = 27.2, 13.4 Hz, 1H), 1.30−1.18 (m, 2H).
1H NMR (400 MHz, MeOD): δ 7.78−7.66 (m, 3H), 7.66−7.56 (m,
3H), 7.53 (dd, J = 8.2, 2.5 Hz, 1H), 7.47−7.38 (m, 2H), 7.38−7.32 (m,
1H), 7.17 (t, J = 8.1 Hz, 1H), 7.11 (dd, J = 8.2, 2.0 Hz, 1H), 6.79 (d, J =
1.9 Hz, 1H), 5.29 (d, J = 10.7 Hz, 1H), 5.14 (dd, J = 13.3, 5.2 Hz, 1H),
4.97 (d, J = 10.8 Hz, 1H), 4.46 (dd, J = 5.7, 2.5 Hz, 2H), 3.41−3.33 (m,
2H), 2.96−2.64 (m, 5H), 2.50 (qdd, J = 13.3, 4.6, 2.5 Hz, 1H), 2.22−
2.09 (m, 2H), 2.02−1.84 (m, 3H), 1.79−1.48 (m, 7H), 1.48−1.35 (m,
2H), 1.22 (td, J = 13.7, 4.0 Hz, 2H).
(3′R,4′S,5′R)-6″-Chloro-4′-(3-chloro-2-fluorophenyl)-N-(4-((5-(2-
(2,6-dioxopiperidin-3-yl)-1,3-dioxoisoindolin-4-yl)pent-4-yn-1-yl)-
carbamoyl)phenyl)-2″-oxodispiro[cyclohexane-1,2′-pyrrolidine-
3′,3″-indoline]-5′-carboxamide (14). HATU (13.3 mg, 1.2 equiv) and
N,N-diisopropylethylamine (0.026 mL, 0.15 mmol) were added to a
solution of MI-1061 (20 mg, 0.029 mmol) in 0.5 mL DMF and stirred.
After 10 min, 26b (0.35 mL, 0.1 M in DMSO) was added to the
reaction. After 30 min, the solvent was removed and the crude was
dissolved in 3:1 MeOH/water, acidified with TFA, and purified by
reverse-phase preparative HPLC. The purified fractions were
combined, concentrated in vacuo, re-dissolved in water, frozen, and
lyophilized to give MD-224 (8.7 mg, yield: 34%) as a white powder.
LC−MS(ESI) m/z (M + 2H)2+: 445.30; calcd for C48H45Cl2FN6O6
(M + 2H)2+: 445.14; >98% purity.
(3′R,4′S,5′R)-6″-Chloro-4′-(3-chloro-2-fluorophenyl)-N-(4-((5-
(((S)-1-((2S,4R)-4-hydroxy-2-(((S)-1-(4-(4-methylthiazol-5-yl)-
phenyl)ethyl)carbamoyl)pyrrolidin-1-yl)-3,3-dimethyl-1-oxobutan-
2-yl)amino)-5-oxopentyl)carbamoyl)phenyl)-2″-oxodispiro-
[cyclohexane-1,2′-pyrrolidine-3′,3″-indoline]-5′-carboxamide (18).
28a−28c were synthesized as previously reported.20 Then, 18 (21.3
mg, yield: 67% from MI-1061) was synthesized with the same synthetic
strategy described for 13 with 28a.
LC−MS(ESI) m/z (M + H)+:1107.41, 5.765 min; calcd for
C58H66Cl2FN8O7S (M + H)+: 1107.41; >95% purity.
1H NMR (400 MHz, MeOH-d4) δ 9.01 (s, 1H), 7.88−7.74 (m, 2H),
7.72 (t, J = 6.5 Hz, 1H), 7.69−7.60 (m, 2H), 7.53 (dd, J = 8.4, 2.6 Hz,
1H), 7.47−7.30 (m, 5H), 7.19 (t, J = 8.1 Hz, 1H), 7.14−7.05 (m, 1H),
6.80 (d, J = 1.9 Hz, 1H), 5.38 (d, J = 11.0 Hz, 1H), 5.02−4.96 (m, 2H),
4.65−4.51 (m, 2H), 4.43 (s, 1H), 3.88 (d, J = 11.2 Hz, 1H), 3.74 (dd, J
= 11.0, 3.9 Hz, 1H), 3.37 (t, J = 6.5 Hz, 2H), 2.95 (d, J = 8.1 Hz, 1H),
2.49 (s, 3H), 2.37−2.12 (m, 4H), 2.06−1.84 (m, 4H), 1.78 (d, J = 11.8
Hz, 2H), 1.72−1.59 (m, 4H), 1.55−1.42 (m, 4H), 1.36−1.14 (m, 2H),
1.03 (s, 9H).
1H NMR (400 MHz, MeOH-d4): δ 7.83−7.62 (m, 4H), 7.56 (dd, J =
8.3, 2.5 Hz, 1H), 7.54−7.47 (m, 2H), 7.47−7.32 (m, 3H), 7.19 (ddd, J
= 8.9, 7.6, 3.3 Hz, 1H), 7.12 (dd, J = 8.2, 2.0 Hz, 1H), 6.80 (d, J = 1.9 Hz,
1H), 5.30 (d, J = 10.8 Hz, 1H), 5.13 (ddd, J = 13.0, 7.4, 5.2 Hz, 1H),
4.98 (d, J = 10.9 Hz, 1H), 4.49−4.25 (m, 2H), 3.57 (t, J = 6.6 Hz, 2H),
2.97−2.83 (m, 2H), 2.83−2.73 (m, 1H), 2.68−2.42 (m, 3H), 2.28−
2.13 (m, 2H), 2.13−1.84 (m, 5H), 1.84−1.68 (m, 2H), 1.57 (ddd, J =
16.3, 6.2, 3.0 Hz, 1H), 1.34−1.19 (m, 2H).
(3′R,4′S,5′R)-6″-Chloro-4′-(3-chloro-2-fluorophenyl)-N-(4-((2-(2-
(3-(((S)-1-((2S,4R)-4-hydroxy-2-(((S)-1-(4-(4-methylthiazol-5-yl)-
phenyl)ethyl)carbamoyl)pyrrolidin-1-yl)-3,3-dimethyl-1-oxobutan-
2-yl)amino)-3-oxopropoxy)ethoxy)ethyl)carbamoyl)phenyl)-2″-
oxodispiro[cyclohexane-1,2′-pyrrolidine-3′,3″-indoline]-5′-carbox-
amide (19). 19 (25.0 mg, yield: 75% from MI-1061) was obtained
using the same synthetic strategy described for 18 with 28b.
LC−MS(ESI) m/z (M + H)+:1167.64, 5.656 min; calcd for
C60H70Cl2FN8O9S (M + H)+: 1167.44; >95% purity.
(3′R,4′S,5′R)-6″-Chloro-4′-(3-chloro-2-fluorophenyl)-N-(4-((4-(2-
(2,6-dioxopiperidin-3-yl)-1-oxoisoindolin-4-yl)but-3-yn-1-yl)-
carbamoyl)phenyl)-2″-oxodispiro[cyclohexane-1,2′-pyrrolidine-
3′,3″-indoline]-5′-carboxamide (15). 15 (16.9 mg, yield: 67% from
MI-1061) was obtained as a white powder using the same synthetic
strategy described for MD-224 with 26c.
LC−MS(ESI) m/z (M + H)+: 875.36; calcd for C47H42Cl2FN6O6
(M + H)+: 875.25; >98% purity.
1H NMR (400 MHz, MeOH-d4): δ 8.97 (s, 1H), 7.86−7.76 (m, 2H),
7.71 (dd, J = 10.4, 3.9 Hz, 1H), 7.66−7.58 (m, 2H), 7.53 (dd, J = 8.2,
2.5 Hz, 1H), 7.47−7.30 (m, 5H), 7.19 (t, J = 8.1 Hz, 1H), 7.10 (dd, J =
8.2, 1.9 Hz, 1H), 6.79 (d, J = 1.9 Hz, 1H), 5.38 (d, J = 10.9 Hz, 1H),
5.00−4.95 (m, 2H), 4.64 (s, 1H), 4.57 (dd, J = 11.9, 4.6 Hz, 1H), 4.42
(s, 1H), 3.86 (d, J = 11.2 Hz, 1H), 3.76−3.53 (m, 11H), 2.94 (d, J = 8.9
Hz, 1H), 2.62−2.40 (m, 5H), 2.26−2.09 (m, 2H), 2.04−1.86 (m, 4H),
1.78 (d, J = 11.9 Hz, 2H), 1.63−1.38 (m, 4H), 1.32−1.17 (m, 2H), 1.01
(s, 9H).
1H NMR (400 MHz, MeOH-d4): δ 7.89−7.80 (m, 2H), 7.76−7.69
(m, 2H), 7.69−7.61 (m, 2H), 7.59 (dt, J = 7.7, 0.8 Hz, 1H), 7.56 (dt, J =
8.3, 2.6 Hz, 1H), 7.47 (t, J = 7.7 Hz, 1H), 7.42−7.30 (m, 1H), 7.18 (td, J
= 8.1, 1.1 Hz, 1H), 7.11 (dt, J = 8.2, 1.7 Hz, 1H), 6.80 (d, J = 1.9 Hz,
1H), 5.43−5.27 (m, 1H), 5.12−4.97 (m, 2H), 4.32 (d, J = 7.8 Hz, 2H),
3.73−3.56 (m, J = 6.4 Hz, 2H), 3.02−2.76 (m, 4H), 2.67 (ddt, J = 21.0,
17.7, 3.4 Hz, 1H), 2.20 (d, J = 13.9 Hz, 1H), 2.12−1.85 (m, 5H), 1.78
(d, J = 12.9 Hz, 2H), 1.63−1.49 (m, 1H), 1.31−1.16 (m, 2H).
(3′R,4′S,5′R)-6″-Chloro-4′-(3-chloro-2-fluorophenyl)-N-(4-((5-(2-
(2,6-dioxopiperidin-3-yl)-1-oxoisoindolin-5-yl)pent-4-yn-1-yl)-
carbamoyl)phenyl)-2″-oxodispiro[cyclohexane-1,2′-pyrrolidine-
3′,3″-indoline]-5′-carboxamide (16). 16 (18.1 mg, yield: 71% from
MI-1061) was obtained using the same synthetic strategy described for
MD-224 with 26d.
(3′R,4′S,5′R)-6″-Chloro-4′-(3-chloro-2-fluorophenyl)-N-(4-(((S)-
14-((2S,4R)-4-hydroxy-2-(((S)-1-(4-(4-methylthiazol-5-yl)phenyl)-
ethyl)carbamoyl)pyrrolidine-1-carbonyl)-15,15-dimethyl-12-oxo-
3,6,9-trioxa-13-azahexadecyl)carbamoyl)phenyl)-2″-oxodispiro-
[cyclohexane-1,2′-pyrrolidine-3′,3″-indoline]-5′-carboxamide (20).
20 (23.9 mg, yield: 69% from MI-1061) was obtained using the same
synthetic strategy described for 18 with 28c.
LC−MS(ESI) m/z (M + H)+:889.38; calcd for C48H44Cl2FN6O6 (M
+ H)+ 889.27; >98% purity.
LC−MS(ESI) m/z (M
+ : 606.31; calcd for
2H)2+
C62H75Cl2FN8O10S (M + 2H)2+: 606.23; >95% purity.
1H NMR (400 MHz, MeOH-d4): δ 7.82−7.74 (m, 2H), 7.71 (ddd, J
= 6.4, 4.0, 1.5 Hz, 1H), 7.66 (dd, J = 7.9, 4.2 Hz, 1H), 7.61−7.46 (m,
4H), 7.38 (dt, J = 9.2, 8.4 Hz, 2H), 7.19 (t, J = 8.0 Hz, 1H), 7.15−7.06
(m, 1H), 6.80 (d, J = 1.9 Hz, 1H), 5.35 (dd, J = 10.8, 8.6 Hz, 1H), 5.24−
1H NMR (400 MHz, MeOH-d4): δ 8.94 (s, 1H), 7.87−7.76 (m, 2H),
7.76−7.66 (m, 1H), 7.66−7.57 (m, 2H), 7.54 (dd, J = 8.2, 2.5 Hz, 1H),
7.46−7.32 (m, 5H), 7.18 (t, J = 8.1 Hz, 1H), 7.11 (dd, J = 8.2, 2.0 Hz,
P
J. Med. Chem. XXXX, XXX, XXX−XXX