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A. Kannan et al. / Peptides 31 (2010) 1629–1634
With limited literature information about rice bran protein
of the eluates obtained after ion-exchange chromatography (IEC)
was determined using the MTS assay [8].
hydrolysates and peptides exhibiting functional properties, more
disease progression states.
2.4. Preparative HPLC purification of IEC eluate showing
anti-cancer activity
In this context, and based on earlier published findings that rice
bran peptide fractions have the ability to cause growth arrest in
certain cancer cell type proliferation [8,9], the objectives involved
separation of the <5 kDa fraction from rice bran peptide hydrolysate
by pressure-driven membrane based separation (ultrafiltration),
purification from the <5 kDa fraction to obtain single peptide(s)
that show significant anti-cancer effects, further characterization
to determine accurate mass and amino acid sequence of the pep-
tide(s). The <5 kDa peptide fraction was subjected to ion exchange
and HPLC purification to obtain single pure peptide(s). This was
followed by evaluation of single pure peptides for enhanced cancer
cell anti-proliferation activity. The pure peptide that showed cancer
cell anti-proliferation activity was subjected to mass spectrometry
analysis for determining the accurate molecular mass, amino acid
analysis and tandem mass spectrometry for determining the amino
acid sequence of the pure peptide.
Preparative scale peptide-specific column (Biopore Prep ID 22 x
L 250 mm part # 34955) was used to separate peptides from the
IEC eluates that showed better anti-proliferative activity and the
absorbance of the eluate monitored at 215 nm. The gradient from
solvent A (1.2 mL TFA/1000 mL de-ionized water) to solvent B (0.1%
TFA in Acetonitrile:water 50:50) was varied from 100% solvent A
to 100% solvent B over 80 min at 2 mL/min flow rate monitored
at 215 nm. The peaks were collected and tested for cancer cell
anti-proliferative activity, and the peak that showed such effects
was fully characterized using mass spectrometry and amino acid
sequencing.
2.5. Amino acid analysis
A modified method of AOAC 982.30a (1990) was used for
hydrolyzing purified peptides. 10 mg of peptide samples were
hydrolyzed in 10 mL of 6.0 N HCl under vacuum at 150 ◦C for 12 h
and evaporated under nitrogen at 60 ◦C. Sodium diluent buffer
pH 2.2 (1 mL) was added to the dried peptide, filtered and the
filtrate was analyzed for amino acids. The peptides were pre-
treated with performic acid prior to hydrolysis to preserve cysteine
and methionine, while alkali hydrolysis was conducted to deter-
mine tryptophan (AOAC 982.15, 2000). Amino acid analysis of
the filtrate was conducted on an automated amino acid ana-
lyzer (Beckman 6300, Beckman Instruments, Inc. Palo Alto, CA)
at a flow rate of 0.67 mL/min (0.44 mL/min for buffer solutions
and 0.23 mL/min for ninhydrin solution). Sodium citrate buffers
(pH 3.3, 4.3 and 6.3) were used as eluents. The amino acid con-
tents (in g/100 g sample) were quantified by comparing them with
amino acid profiles from external amino acid standards as follows
2. Materials and methods
2.1. Materials
HDRB (Heat stabilized De-fatted Rice Bran) was obtained from
Riceland foods (Stuttgart, AR), Human colon (Caco-2), breast (MCF-
7), liver (HepG-2), and lung (A549) cancer cell lines including
growth media were purchased from ATCC, USA. Media supplements
including fetal bovine serum, gentamycin, were purchased from
Hyclone, USA. MTS kit was purchased from Promega USA. Prepar-
ative liquid chromatography system LC-8A was purchased from
Shimadzu, USA. Sephadex G-75 resin from Pharmacia biotech AB,
Uppsala Sweden, biopore C-18 preparative HPLC column, amino
acid analyzer from Beckman Coulter, Bruker Reflex III (Bruker
Daltonics GMBH, Bremen, Germany) and Bruker Ultraflex II time-
of-flight mass spectrometers at the Statewide mass spectrometry
facility, University of Arkansas. All other chemicals purchased were
of HPLC grade and purchased from Sigma, MO, USA.
(Peaksample/Peakstandard) × Concentrationstandard × MWstandard
.
2.6. Cancer cell culture and MTS anti-proliferative assay
Human colon, Caco-2 and liver, HepG2 cancer cells were cul-
tured in DMEM (Dulbecco’s modified eagles medium) in the
presence of 10% fetal bovine serum, supplemented with 1 mM
50 g/mL gentamycin. Human breast, MCF-7 cell line was cul-
tured in Eagle’s Minimum essential medium with the following
supplements: 2 mM l-glutamine, Earle’s BSS adjusted to contain
1.5 g/L sodium bicarbonate, 0.1 mM non-essential amino acids,
1 mM sodium pyruvate and 0.01 mg/mL bovine insulin, 90%, fetal
bovine serum, 10% and 50 g/mL gentamycin. Human lung A-549
cancer cells were cultured in Ham’s F12K medium with 2 mM l-
glutamine adjusted to contain 1.5 g/L sodium bicarbonate, 90%;
fetal bovine serum, 10% and 50 g/mL gentamycin at 37 ◦C in a 5%
CO2 incubator. All cells were cultured at 37 ◦C in a humidified 5%
CO2 incubator.
2.2. Sample preparation
Ground and sieved HDRB was treated with alcalase under opti-
mized conditions to generate peptide hydrolysates, which in turn
was passed through simulated gastrointestinal juices and fraction-
ated using ultrafiltration fractionation columns to generate definite
molecular sized fractions as described by Kannan et al. [8]. The
<5 kDa fraction previously shown to promote growth inhibitory
effects on cancer cells was subjected to purification and charac-
terization employing the following methods.
2.3. Ion-exchange chromatography
A sephadex G-75 ion exchange resin was packed into a glass
column and equilibrated with 10 mM phosphate buffer, pH 8.0.
10 mL of <5 kDa peptide hydrolysate (∼1 mg/mL protein concen-
tration) was loaded onto the column at 1 mL/min flow rate. The
elution was started by washing the unbound hydrolysate eluted
with 10 mM phosphate buffer. After washing, the hydrolysate was
eluted using 10 mM phosphate buffer containing 50 mM NaCl fol-
lowed by elution with 10 mM phosphate buffer containing 100 mM
NaCl. The eluates were collected, concentrated in an Amicon con-
centrator with buffer exchange and stored at 4 ◦C until used for
anti-cancer activity determination. The anti-proliferative activity
Cell proliferation inhibition was assayed using the phenazine
methosulfate 3-(4,5-dimethyl thiazole-2-yl)]-2,5-diphenyl tetra-
zolium bromide (MTS) mix-based cell titer assay. The cells were
transferred onto flat 96-well bottom plates following trypsinization
(0.1% trypsin–0.53 mM ethylene diamine tetra acetic acid (EDTA)
solution) from cell culture flasks used earlier for culture of cells.
Approximately 1000 cells per well were used for growth onto
96 well flat bottom plates. The cells were allowed to attach and
grow for 24–36 h. After 24–36 h old media were replaced with
fresh media, and samples of bran peptide fraction/pure peptide
were treated with the cells. After 24 h exposure of the samples to