Bautista-Ilba´n˜ez et al.
origin such as enzymes and antigens is essential for recognition.2
This phenomenon is known as preorganization. Emil Fischer3-5
was the first scientist to explain the selectivity that is charac-
teristic of enzymatic reactions using the rigid lock and key
model.6 In 1958, Daniel Koshland7,8 proposed that a protein
can show some flexibility that would allow an adaptation to
the substrate. This led to the establishment of the induced fit
model. The two models imply that preorganization plays a
central role. On the other hand, the term complementarity, where
the structure of the host is complementary to that of the guest,
is the other factor that influences molecular recognition.
Apparently, both factors are essential for recognition.
Sugar-protein interactions play an important role in a wide
range of fundamental biological processes that include metabolic
regulation, growth, embriogenesis, and apoptosis among many
others.9-11 The determination of the mechanisms by which
carbohydrates recognize proteins (lectins, antibodies, and en-
zymes among others) remains a fundamental question in
biochemistry. This information will be useful in the future to
control and manipulate the interactions and design structural
mimics of oligosaccharides of pharmaceutical interest.12 For this,
it is important to understand the structural, thermodynamic, and
kinetic phenomena that control the manner in which a carbo-
hydrate is attached to its receptor by the participation of an
aromatic molecule.
Interestingly it is usual to find aromatic amino acid residues
(tryptophan, tyrosine, and phenylalanine) in the protein active
sites that recognize and bond carbohydrates.13,14 Carbohydrate-
protein complexes that have been studied by X-ray diffraction
show that the carbohydrate is positioned in such a way that at
least three hydrogen atoms of the hydrophobic region (that
includes the C-H bonds of the tetrahydropyran ring) are
oriented toward the amino acid aromatic nucleus (Figure 1).
FIGURE 1. Supramolecular structure of the fucose and benzene
complex determined at MP2/6-31G(d,p) including BSSE during the
optimization process.15
energy, so it was considered that if this could be measured, it
would be a clear sign of their existence and relevance.
Recent studies demonstrated theoretically and experimentally
the existence of stabilizing interactions between fucose (a model
of galactose free of conformational implications due to the
rotation of the CH2-OH segment) and benzene (Figure 1). The
determination of the stabilization energy was performed using
ab initio methods at the MP2/6-31G(d,p) level of theory
considering a counterpoise correction during optimization of
the supramolecule. This energy was on the order of 12.5 kJ
mol-1, approximately 4.16 kJ mol-1 for each C-H bond
involved in the interaction. On the other hand, the structure of
the complex was very sensitive to the inclusion of the correction
for the basis set superposition error (BSSE) during the optimiza-
tion. It was, thus, demonstrated that the use of density
functionals that lack terms that adequately describe the long-
distance interaction is not good for evaluating the energy of
the system since it has its origin in the dispersion forces.15,16 In
addition, the authors established that the interaction produced
by benzene (or phenol) on the hydrogen atoms of the R face of
the methyl-â-galactoside is the most important, because the
For recognition to exist, two conditions should be satisfied:
specificity and stabilizing energy. Since the energy associated
with the recognition process of the system is important, the
evaluation of the energy was considered an extremely important
factor for the molecular recognition process. Thus, the evaluation
of the thermodynamic properties of the carbohydrate-aromatic
compound system is most relevant. Stabilizing weak interactions
play an important role on the enthalpic term of the free Gibbs
1
specific H NMR resonances undergo upfield shifting upon
addition of phenol. This behavior has been taken as direct proof
of the existence of CH/π interaction.15 The fact that this
interaction does not require a well-defined mold or a structured
rigid frame created by the protein where the conditions for
interaction are generated is notable.
A study published recently exposed experimental evidence
of the CH/π interaction through the use of near-IR vibrational
spectra of individual carbohydrate conformers isolated under
molecular beam conditions in the gas phase.17 Since the analysis
of weak interactions is controversial18 and it is important to
establish the mechanisms by which these interactions occur, the
experimental determination of the interaction energy between
an aromatic compound and a carbohydrate where the energy
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