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A. K. Ghosh et al. / Bioorg. Med. Chem. Lett. 25 (2015) 668–672
O
O
O
O
THF provided inhibitor 3a. Inhibitors 3b–f were synthesized by fol-
lowing a similar sequence of reactions as inhibitor 3a.
For the synthesis of inhibitors 3g,h, amine 24 was coupled with
commercially available N-Boc-L-methylcysteine 27 using EDC and
a
R
R
N
N
O
O
N
S
Me
Ph
, R = Me
, R = Et
Ph
HOBt to furnish the corresponding coupled product. Removal of
the Boc group by exposure to trifluoroacetic acid, followed by cou-
pling of the resulting amine with optically active ligand acid (S)-8
directly provided inhibitor 3g without needing the final TBS depro-
tection step. Oxidation of the sulfide with oxone furnished inhibi-
tor 3h in excellent yield.24 The synthesis of inhibitors 4a–e was
carried out by coupling amine 26 with thiazole-derived ligand
acids 18a,b and 22a–c to furnish the corresponding coupling prod-
ucts. Exposure of the coupling products to TBAF in THF as
described for inhibitor 3a, afforded inhibitors 4a–e.
The b-secretase inhibitory activity was determined against
recombinant b-secretase using our previously reported assay pro-
tocols.25 The structure and inhibitory potency of inhibitors 3a–h
and 4a–e are reported in Tables 1 and 2, respectively. As can be
observed, the activity data generated from the pyrazole-containing
inhibitors (Table 1) clearly outline a series of well-defined struc-
ture-activity relationships (SARs). First of all, the (S)-configuration
15a
15b
17a, R = Me
17b,
R = Et
b
O
N
I
OH
Me
Me
S
S
N
R
18a, R = Me
16
18b,
Me
R = Et
N
N
HO
I
c, d
Me
S
S
19
20
O
O
O
O
a
R
R
N
N
O
O
N
Me
S
Ph
Ph
15a
15b
, R = Me
21a
, R = Me
, R = Et
b
of the
a-alkyl group showed to be of critical importance for the
, R = Et
21b
O
inhibitory activity, as demonstrated by the dramatic drop in
15c, R = i-Pr
21c, R = i-Pr
S
potency (nearly 40-fold) for compound 3b with respect to 3a,
OH
bearing the
compounds also highlighted the efficacy of the small alkyl group
at the -position, as shown by the steady loss in inhibitory potency
with the increase of the steric bulk of the -alkyl group
(3a > 3c > 3e > 3d). Compound 3d, bearing the bulkier -isopropyl
a-methyl group with (R)-configuration. This series of
N
22a
R
, R = Me
, R = Et
22b
Me
22c, R = i-Pr
a
a
Scheme 2. Reagents and conditions: (a) NaHMDS (1 M in THF), 16 or 20, dry THF,
ꢀ78 °C to 23 °C, 1 h, 69–86%; (b) LiOHꢁH2O, 30% wt H2O2, H2O/THF, 0 °C, 1 h, 90–
95%; (c) CH3SO2Cl, TEA, dry CH2Cl2, 1 h, 0 °C; (d) LiI, acetone, 2 h, 23 °C, 82% (over
two steps).
a
group displayed a nearly 10-fold reduction of potency compared
to inhibitor 3a. The importance of both methyl groups on the pyr-
azole ring (3a) can be seen by comparison of its inhibitory activity
with that of inhibitor 3f. This evidence is in line with the molecular
insight obtained from the protein–ligand X-ray structure of the
pyrazole-bearing inhibitor 2.16 In this X-ray structure, both methyl
groups on the pyrazole ring appear to effectively fill the S3 hydro-
Boc
TBS
O
NH
OH
Me
H
N
H2N
+
N
Cbz
phobic pocket. The importance of Boc-b-amino-L-alanine as the P2
O
H
O
O
NH
a
24
ligand over methylsulfonyl- -alanine can be seen by comparison of
L
23
inhibitor 3a with 3h. Interestingly, methyl sulfide derivative 3g
turned out to be more potent in this series than methyl sulfone
derivative 3h.17
Thiazole containing compounds were also evaluated against b-
secretase and their inhibitory potencies are reported in Table 2.
O
O
TBS
NH
O
Me
H
H
N
N
R N
H
O
O
Compound 4a with a 2-methylthiazole moiety and a-methyl group
25 R = Cbz
26 R = H
O
NH
b
in the P3 ligand showed good BACE1 activity. However, compound
4c, bearing the 4-methylthiazole moiety in the P3 ligand turned
out to be a very potent inhibitor with over 120-fold improvement
over inhibitor 4a. The corresponding inhibitors bearing an ethyl
group or an isopropyl group (4d and 4e) were significantly less
active.
c,d
3a-f
4a-e
and
as defined in Tables 1 and 2
SMe
We have determined the cellular production of Ab in BE(2)-M17
human neuroblastoma cells (ATCCÒ CRL-2267™).26 Inhibitor 4c
displayed an EC50 value of 194 nM in this assay. It showed good
selectivity against memapsin 1 (Ki = 71 nM, selectivity >280-fold).
However, its selectivity over Cat-D was marginal (Ki = 1.25 nM, 5-
fold). As mentioned, blood–brain barrier (BBB) penetration repre-
sents a major issue for the development of BACE1 inhibitors.11–13
It appears that the lipophilicity of inhibitor 4c (clogP, 3.55) is
OH
24
+
N
H
27
Boc
O
a,e,f
Me
X
OH
Me
Me
O
H
N
H
N
N
N
N
H
Me
3g
O
O
O
NH
3g
Me
improved compared to urethane-derived inhibitor
2 (clogP,
X = S
2.21).27,28 Such improvement of lipid solubility may favor BBB pen-
etration of compound 4c over compound 2.
g
3hX = SO2
Scheme 3. Reagents and conditions: (a) EDCIꢁHCl, HOBtꢁH2O, DIPEA, dry CH2Cl2, dry
DMF, 23 °C, 15 h, 61%; (b) Pd(OH)2 20% on carbon, H2, MeOH, 3 h, 99%; (c)
appropriate carboxylic acid, EDCIꢁHCl, HOBtꢁH2O, DIPEA, DMF, 15 h, 23 °C, 45–52%;
(d) TBAF, THF, 23 °C, 12 h, 65–72%; (e) TFA, CH2Cl2, 2 h, 23 °C, 98%; (f) (S)-8,
HATU, HOAt, 2,4,6-collidine, DMF, 23 °C, 15 h, 68%; (g) Oxone, MeOH, water,
23 °C, 1.5 h, 99%.
To obtain molecular insight into specific ligand-binding site
interactions, we created an energy-minimized active site model
of inhibitor 4c based upon the crystal structure of inhibitor 2-
bound b-secretase.16 The conformation of 4c was optimized using
the CHARMM force field.29 A stereoview of the model is shown in