Y. Khatri et al. / FEBS Letters 588 (2014) 3117–3122
3119
CPR at 1:4 CYP19A1 (200 pmol)/CPR (800 pmol) molar ratio, as
described [39]. Briefly, 1 ml of CYP19A1 and CPR solution in
100 mM potassium phosphate buffer, pH 7.4, containing 50 mM
NaCl and 50 lM substrate (AD, 19-OH-AD, or 19-Oxo-AD) was
brought to 37 °C in a stirred quartz cuvette, path length of
pH/pD 7.4. Deuterated samples were prepared by exhaustive
exchange of the proteins in corresponding D2O buffers.
In order to determine the reaction time for the substrates AD,
19-OH-AD and 19-oxo-AD, firstly time-dependent substrate con-
version was performed and the 10 min incubation time was chosen
for the catalytic activity, during which the catalytic activity was in
linear phase (Fig. 3).
0.4 cm. The sample was incubated for 3 min and the reaction was
initiated by addition of 300
NADPH was monitored by recording the absorbance at 340 nm
for 10 min. The reaction was stopped by adding 50 l of 9 M sulfu-
lM of NADPH. The consumption of
Using AD as the starting substrate, 19-OH-AD and 19-oxo-AD
were detected in the reaction mixture under steady state
conditions. Similarly, 19-oxo-AD and estrone were obtained
when 19-OH-AD was used as the starting substrate for turnover
experiments. Starting with AD, 19-OH-AD and 19-oxo-AD
were obtained with the individual rates of 1.63 0.04 minÀ1 and
l
ric acid to bring the pH below 4.0. The sample was removed from
the cuvette, flash frozen in liquid nitrogen, and stored at À80 °C
until product analysis. The optical measurements were performed
on Hitachi U-3300 spectrophotometer supplied with temperature
controller and built-in magnetic stirrer. The rate of NADPH oxida-
tion was determined from the slope of absorption at 340 nm dur-
ing the first three minutes using an extinction coefficient of
6.22 cmÀ1mMÀ1. A ratio of 1:4 of P450:CPR was chosen based on
previously established optimal ratio of reductase to P450 for
in vitro turnover experiments using the Nanodisc system [39]. In
this approach the reductase, in a dynamic equilibrium with reduc-
tase molecules in solution, inserts into the P450 containing Nano-
disc through its membrane anchoring tail thereby allowing the
formation of an efficient electron transfer complex.
4.06 0.30 minÀ1, respectively, (total rate of 5.70 0.34 minÀ1
)
when the reaction was carried out in a protiated buffer system.
Rates of formation of both these products showed substantial
slowing upon H/D substitution, yielding a KSIE for the step-I
hydroxylation reaction of kH/kD = 2.7. In both the cases, the rate
of second product formation was almost 2.5 times faster, suggest-
ing a distributive nature of the enzyme. It is noteworthy that both
the rates of formation of individual products (0.62 0.07 minÀ1
and 1.52 0.15 minÀ1 for 19-OH-AD and 19-oxo-AD, respectively)
as well as total product (2.14 0.22 minÀ1), displayed an isotope
effect of P2.6 (Fig. 4A).
2.3. Catalytic turnover
These KSIE data are very similar to the reported values for other
well studied P450 systems catalyzing hydroxylation chemistry
[13,40,41]. This was expected since the first two steps of CYP19A1
catalysis i.e. AD to 19-OH-AD and 19-OH-AD to 19-oxo-AD are
standard P450 hydroxylations and are thought to go through the
classical Cpd 1 mediated H-rebound mechanism [42].
When 19-oxo-AD was used as the C10–C19 lyase substrate, the
rate of estrone formation was 2.5 times slower in D2O (i.e.
7.1 0.8 minÀ1 in H2O versus 2.8 0.8 minÀ1 in D2O) (Fig. 4C). This
corresponds to the KSIE of kH/kD = 2.53, similar to that seen when
AD was used as the starting substrate. This suggests the involve-
ment of same reactive intermediate Cpd 1 during catalysis. In con-
trast, the involvement of unprotonated peroxo-ferric intermediate
in the catalysis of C17–C20 lyase step by CYP17A1 resulted in a
large inverse solvent isotope effect kH/kD = 0.4 arising from compe-
tition between catalysis through a proton-independent intermedi-
ate, viz. the peroxo anion, and uncoupling via proton-dependent
uncoupling pathway(s), viz. the peroxide and the oxidase shunt
[23].
The conversion of AD, 19-OH and 19-oxo-AD to estrone was
analyzed by HPLC (Waters). Briefly, 1 ll of 18 mM progesterone
solution in methanol was added to 1 ml each of the reaction sam-
ple, as an internal standard, and vortexed for 30 s. 2 ml of chloro-
form was added to each aliquots and vortexed for 30 s. The
organic phase was removed and dried under the stream of nitro-
gen. The dried sample was dissolved in 100 l of methanol and 30
l was injected onto C18-HPLC column, using a 150 Â 2.1 mm,
3 lm (ACE-111-1502) with the mobile phase of 45% each of meth-
anol and acetonitrile in water and a flow rate of 0.2 ml/min. The
19-hydroxylated and 19-Oxo product of AD was separated in the
linear gradient of methanol and acetonitrile from 20% to 80% in
30 min, and detected at 240 nm. The formation of estrogen was
detected at 280 nm. Peak integration was performed with GRAM/
32 software (Thermo Fischer Scientific).
3. Results and discussion
The conversion of 19-OH-AD to its products by CYP19A1 is unu-
sual. Use of 19-OH-AD, substrate for the second hydroxylation
step, as the starting substrate also yielded two products. In H2O,
19-oxo-AD and estrone were obtained at a rate of 2.3 0.2 minÀ1
3.1. Steady-state kinetic turnover by CYP19A1 in protiated and
deuterated solvent systems
and 1.8 0.3 minÀ1 respectively giving
a total rate of 4.1
CYP19A1 and CPR self-assembled in Nanodiscs was used to
quantitate product formation and NADPH oxidation rates in the
presence of saturating concentrations of AD and 19-OH-AD for
hydroxylation and 19-oxo-AD for the lyase reaction at 37 °C and
0.5 minÀ1. The second hydroxylation step of CYP19A1 also showed
the same distributive nature of the enzyme and gave two products.
However, the rate of second product formation was slower in this
Fig. 3. Time dependent total conversion of AD (A), 19-OH-AD (B) and 19-oxo-AD (C) by CYP19A1.