A. Skogh et al.
Bioorganic & Medicinal Chemistry Letters xxx (xxxx) xxx–xxx
Fig. 1. Lead compound 1 derived from SAR studies of SP1–7 and EM-2 along with three rigidified and terminal modified analogues 2, 3 and 4. Compounds evaluated
3
in a displacement binding assay using spinal cord membrane from rats and radioactive [ H]SP1–7 tracer.
Fig. 1), but not EM-1, exhibited high affinity for the SP1–7 binding
site.
Herein, as an alternative to the primary amine in 2 and the carba-
mate in 3, compound 4 was designed and prepared, comprising an C5
phenyl substituted imidazole carboxamide in the N-terminal (Fig. 1).
This phenylalanine isostere match both the side chain phenyl and
contains nitrogen atoms that can act as hydrogen bond donors (HBD),
hydrogen bond acceptors (HBA), and sites for positive charges, de-
pending on tautomeric state and pH. The assessment of in vitro plasma
stability and permeability as well as its in vitro cytotoxic profile in
primary neuronal cell cultures of the new imidazole based H-Phe-Phe-
2
0,21
2
7
In our ongoing medicinal chemistry program, we aimed at devel-
oping pharmacological tools for in depth studies of the SP1–7 system but
also employing SP1–7 as starting point in a design process with the long
term goal to discover new chemical entities as potential new ther-
apeutics useful for treatment of neuropathic pain. Important anchor
points of SP1–7 and EM-2 were identified through a structure activity
relationship (SAR) study.2
2,23
The extensive SAR study revealed that a
C-terminal primary amide is improving the binding affinity and, hence,
resulted in the identification of SP1–7-NH with a K of 0.3 nM (Fig. 1).
N-terminal truncation of SP1–7-NH and EM-2 along with an alanine
scan led to the remarkable discovery of the dipeptide lead compound 1
H-Phe-Phe-NH ) with equipotent affinity (K = 1.5 nM) as the SP1–7
itself (Fig. 1).
2
NH peptidomimetic 4 is presented. Furthermore, the in vivo anti-allo-
dynic potential of the compound in an SNI model of neuropathic pain
after peripheral administration (i.p.) was assessed. Moreover, to con-
front its action with the SP1–7-NH peptide and with gabapentin and
2
morphine used in clinic the activity of the four compounds were com-
pared in the SNI model.
2
i
2
(
2
i
A pharmacophore hypothesis was proposed for 1 where (S,S) con-
figuration of the side-chains, primary amine in the N-terminal and
primary amide in the C-terminal were essential features for binding.24
The in vivo effect of 1 was further evaluated in a diabetic neuropathy
model induced by streptozotocin (STZ). Following central (intrathecal,
i.t.) administration 1 produced potent anti-allodynic and anti-hyper-
The introduction of the ortho-substituted imidazole moiety in 4
complies with a suitable atom-to-atom match to the N-terminal phe-
nylalanine residue in 1 (Fig. 2). In order to investigate if 1 and 4 can
obtain similar spatial arrangement of their potential pharmacophore
groups in low energy conformations, a pharmacophore group alignment
analysis was performed using Phase.28 Conformational analysis of 1 and
2
5
−1
algesic effect at a 0.5–4 pmol dosage range. However, when evaluated
in mice suffering from spared nerve injury (SNI) after peripheral (in-
traperitoneal, i.p.) administration of a dose at 185 nmol/kg, the di-
peptide amide 1 failed to reach any distinct anti-allodynic effect.12 This
observation is probably due to low brain exposure since 1 displayed
poor drug-like properties such as poor plasma stability, high hepatic
metabolism and low permeability and stability over Caco-2 cells.24
With the aim to develop drug-like analogues to 1 acting as the
neuropeptide SP1–7, compound 2 and 3 were designed (Fig. 1).2
Both compounds exhibited retained binding in vitro along with im-
proved metabolic stability and permeability. When evaluated in vivo in
the SNI model, the rigidified compound 2 displayed a strong anti-al-
lodynic effect. The effect, however, was short-lasting with a peak of
effect after 30 min, which may be attributed to low brain exposure due
to high blood-brain barrier (BBB) efflux as indicated in vitro by Caco-2
4 resulted in 69 and 76 conformations, respectively, within 21 kJ mol
of the lowest energy conformation found, which were included in the
pharmacophore group alignment analysis. Requirement of matching all
the mutual potential pharmacophore groups identified by Phase (three
HBD, two HBA, and two aromatic rings), produced six clusters of
pharmacophore group match hypotheses. The match with the lowest
−1
−1
energy conformations (ΔE = 3.6 kJ mol
and 7.8 kJ mol
from the
lowest energy conformation found for 4 and 1, respectively) is pre-
sented in Fig. 2 and shows a very good overlap of the mutual structural
features that can be of importance for target-ligand interactions. Taken
together, the analysis show that compounds 4 and 1 indeed can obtain a
similar spatial arrangement of their potential pharmacophore groups in
low energy conformations. Albeit the rigidified 4 should not be able to
cover all spatial arrangements of the more flexible 1, the analysis
supports that the ortho-substituted imidazole can act as a suitable mimic
of the N-terminal phenylalanine residue in 1.
4,26
1
2
cells measurements. The carbamate 3 on the other hand, displayed no
in vitro efflux over the Caco-2 monolayer and was shown to enter the
CNS according to an in vivo infusion study but failed to exhibit any anti-
allodynic effect in the SNI mice, possibly as a results of fast hydrolysis
of the carbamate functionality in plasma.12,26
The synthesis of 4 was performed adopting a previously described
method27 and is outlined in Scheme 1. The Pd-catalyzed C5 arylation of
1-benzyl-1H-imidazole was conducted under microwave irradiation for
2 3
1 h at 160 °C using bromobenzene, Pd(OAc) , P(2-furyl) , pivalic acid
2