Article
Journal of Medicinal Chemistry, 2010, Vol. 53, No. 21 7769
(
7
dd, J=11.0, 5.1 Hz, 1H), 6.20 (s, 1H), 6.44 (s, 1H), 6.92 (t, J=
.5 Hz, 1H), 7.00 (t, J=7.5 Hz, 1H), 7.15 (m, 1H), 7.25 (t, J=8.4
Hz, 1H), 7.36 (d, J=7.9 Hz, 1H), 8.33 (s, 1H), 8.82 (s, 1H), 9.32
Characterization of DUPA-Linker II (13b). The synthesis of
linker II was performed similarly to DUPA-linker I using SPPS.
Analytical RP-HPLC: R
and B = CH CN; solvent gradient: 10-80% B in 12 min]. H
NMR (DMSO-d ): δ 1.01 (m, 2H), 1.14 (m, 2H), 1.30 (m, 3H),
t 4
=2.2 min [A=10 mM NH OAc (pH 7.0),
þ
1
(
found, 769.5.
s, 1H). LC/MS (m/z): (M þ H) calcd for C43
H
57
N
6
O
7
, 769.9;
3
6
1
Characterization of Disulfide-Activated DAVBH (9). H NMR
1.70 (m, 3H), 1.89 (m, 2H), 1.95 (m, 2H), 2.08 (m, 2H), 2.23 (m,
2H), 2.65 (m, 2H), 2.79 - 3.00 (m, 9H), 3.06 (dd, J = 14.1, 4.8
Hz, 1H), 4.04 (m, 1H, R-H), 4.08 (m, 1H, R-H), 4.43 (m, 1H,
R-H), 4.47 (m, 1H, R-H), 4.58 (m, 1H, R-H), 7.20 (m, 10H). LC/
(
DMSO-d
J=7.5 Hz, 3H), 1.03 (d, J=6.1 Hz, 1H), 1.12 (s, 2H), 1.19 (m, 2H),
.33 (m, 2H), 1.60 (m, 2), 1.78 (m, 1H), 2.38 (m, 2H), 2. 56 (bs, 1H),
.67 (m, 1H), 2.78 (s, 3H), 2.90 (dd, J=14.2, 5.2 Hz, 1H), 3.09 (s,
H), 3.12 (m, 2H), 3.16 (bs, 1H), 3.21 (dd, J= 15.5, 4.1 Hz, 1H),
.28 (d, J=14.2 Hz, 1H), 3.42 (s, 1H), 3.56 (s, 3H), 3.74 (s, 3H), 3.82
d, J=6.5 Hz, 1H), 3.99(s, 1H), 4.09(m, 2H), 4.23(m, 2H), 5.61 (d,
J=10.1 Hz, 1H), 5.71 (dd, J=10.7, 5.8 Hz, 1H), 6.22 (s, 1H), 6.48
s, 1H), 6.94 (t, J=7.5 Hz, 1H), 7.02 (t, J=7.5 Hz, 1H), 7.28 (d, J=
.9 Hz, 2H), 7.39 (d, J=8.0 Hz, 1H), 7.86 (m, 2H), 8.49 (bs, 1H),
.66 (s, 1H), 9.20 (s, 1H), 9.32 (s, 1H), 9.45 (s, 1H). LRMS-LC/MS
6 2
/D O): δ 0.64 (m, 1H), 0.76 (t, J=7.3 Hz, 3H), 0.81 (t,
1
2
3
3
þ
MS (m/z): (M þ H) calcd for C H N O S, 859.95; found,
4
0
55
6
13
859.67. UV/vis: λmax = 257 nm.
Characterization of DUPA-Linker III (13c). The synthesis of
linker III was performed as described for DUPA-linker I using
(
SPPS. Analytical RP-HPLC: white solid, R
TFA (pH 2), and B=CH CN; solvent gradient: 1-50% B in 10
/D O): δ 1.70 (m, 3H), 1.90 (m, 3H),
t
=8.2 min [A=0.1
(
7
8
3
1
min]. H NMR (DMSO-d
6
2
2.10 (m, 2H), 2.17 (m, 2H), 2.23 (m, 2H), 2.36 (q, J = 8.3 Hz,
1H), 2.59 (dd, J=11.0, 5.7 Hz, 1H), 2.79 (m, 3H), 3.04 (dd, J=
9.8, 4.0 Hz, 1H), 4.07 (m, 2H), 4.13 (m, 1H), 4.37 (m, 1H), 4.47
(m, 2H), 7.19 (m, 5H), 7.87 (d, J=8.1 Hz, 1H), 8.20 (d, J=7.8
þ
(
m/z): (M) calcd for C51
Characterization of Disulfide-Activated Cpt (10). H NMR
DMSO-d ): δ 0.92 (t, J=7.4 Hz, 3H), 2.18 (m, 2H), 3.14 (t, J=
.1 Hz, 2H), 4.32 (t, J=6.0 Hz, 2H), 5.30 (s, 2H), 5.52 (d, J=3.5
Hz, 2H), 7.09 (s, 1H), 7.15 (m, 1H), 7.70 (m, 2H), 7.77 (td, J =
.75, 1.8 Hz, 1H), 7.85 (td, J=8.0, 1.0 Hz, 1H), 8.13 (t, J=8.1
64 7 9 2
H N O S , 982.2; found, 982.5.
1
(
6
6
þ
Hz, 1H). LC/MS (m/z): (M þ H) calcd for C H N O S,
3
2
43
6
17
815.7; found, 815.3. UV/vis: λmax = 257 nm.
7
Synthesis of DUPA-TubH I (14). Into a solution of saturated
sodium bicarbonate (2 mL) and HPLC grade water, argon was
bubbled for 10 min. With continuous bubbling of argon, DUPA-
linker I (9.2 mg, 0.0113 mmol) was dissolved in argon-purged
HPLC grade water (2.0 mL), and the pH of the reaction mixture
was increased to ca. 7 using argon-purged bicarbonate. A solu-
tion of disulfide activated-TubH 6 (12.0 mg, 0.0113 mmol) in
THF (2.0 mL) was then added to the reaction mixture, and the
solution was stirred for 10 min. After THF was removed under
reduced pressure, DUPA-TubH I (DUPA-TubH I) was purified
by preparative RP-HPLC [A=2 mM sodium phosphate buffer
Hz, 2H), 8.39 (dt, J = 4.8, 0.7 Hz, 1H), 8.69 (s, 1H), ESI/MS
(
Characterization of Disulfide-Activated VrcA (11). Synthesis
was performed similarly to the DUPA-didemin B conjugate (see
þ
m/z): (M þ H) calcd for C H N O S , 562.6; found, 562.3.
2
8
24
3
6 2
1
above). H NMR (DMSO-d ): δ 0.73 (s, 3H), 0.88 (d, J=6.8 Hz,
6
3
1
1
1
4
5
6
8
H), 1.23 (s, 1H), 1.57 (t, J=12.7 Hz, 1H), 1.62 (s, 3H), 1.72 (s,
H), 1.92 (m, 2H), 2.78 (d, J=3.9 Hz, 1H), 3.03 (d, J=3.9 Hz,
H), 3.16 (t, J=6.1 Hz, 1H), 3.70 (d, J=5.1 Hz, 1H), 3.94 (t, J=
1.7 Hz, 1H), 4.20 (d, J=12.1 Hz, 1H), 4.35 (t, J=6.0 Hz, 1H),
.39 (d, J=12.1 Hz, 1H), 4.84 (s, 1H), 5.31 (d, J=4.7 Hz, 1H),
.82 (m, 1H), 6.24 (d, J=15.5 Hz, 1H), 6.32 (d, J=11.1 Hz, 1H),
.88 (t, J=11.4 Hz, 1H), 7.25 (t, J=6.0 Hz, 1H), 7.82 (m, 2H),
(pH 7.1), and B=CH CN; solvent gradient: 5-80% B in 25 min],
3
yielding the desired product (12.2 mg, yield = 61.3%). Analyt-
ical RP-HPLC: R = 1.8 min [A = 10 mM NH OAc (pH 7.0),
þ
.07 (s, 1H), 8.46 (d, J=4.2 Hz, 1H). LC/MS (m/z): (M þ H)
t
4
1
calcd for C35
H
42NO11
S
2
, 716.8; found, 716.5.
and B = CH CN; solvent gradient: 10-100% B in 4 min]. H
3
Synthesis of Disulfide-Activated DidB (12). To a solution of
DidB (15.0 mg, 0.013 mmol) in CH Cl (0.33 mL) at 0 °C,
NMR (DMSO-d
6 2
/D O): δ 0.67 (d, J=5.5 Hz, 3H), 0.81 (q, J=
2
2
7.8 Hz, 2H), 0.86 (d, J=7.2 Hz, 3H), 0.96 (d, J=6.2 Hz, 3H),
2
(
-[benzotriazole-1-yl-(oxycarbonyloxy)ethyldisulfanyl]pyridine
18.0 mg, 0.047 mmol) and DMAP (8.0 mg, 0.067 mmol) were
1
2
.03 (m, 3H), 1.10 (m, 1H), 1.27 (bs, 6H), 1.47 (q, J = 7.3 Hz,
H), 1.51 (m, 1H), 1.61 (m, 2H), 1.68 (m, 1H), 1.82 (m, 2H), 1.92
added. The reaction mixture was stirred for 2 h at room tem-
perature, and the crude product was purified by column chro-
matography (0-4% methanol in dichloromethane) to afford
(
m, 1H), 2.11 (s, 6H), 2.23 (m, 2H), 2.37 (m, 2H), 2.42 (t, J=8.1
Hz, 1H), 2.71 (m, 1H), 3.00 (bs, 1H), 3.10 (m, 3H), 3.58 (bt, 2H),
.13 (m, 2H), 4.22 (m, 2H, R-H), 4.26 (t, J=7.0 Hz, 1H), 4.42 (t,
4
1
the activated DidB, as a white solid (10.0 mg, 56%). H NMR
J=8.8 Hz, 1H), 5.28 (d, J=12.1 Hz, 1H), 5.73 (d, J=11.4 Hz,
1H), 6.18 (bs, 1H), 6.60 (d, J=7.9 Hz, 2H), 6.97 (d, J=7.9 Hz,
2H), 7.24 (m, 2H), 7.68 (m, 1H), 7.70 (m, 1H), 7.80 (m, 2H), 7.85
(
CDCl
J=6.9 Hz, 3H), 1.38 (m, 4H), 1.51 (d, J=6.7 Hz, 3H), 1.56-1.79
m, 7H), 1.98-2.17 (m, 6H), 2.26 (m, 1H), 2.34 (m, 1H), 2.54 (s,
H), 2.63 (m, 1H), 3.02 (t, J = 6.8 Hz, 2H), 3.14 (s, 3H), 3.17-
.21 (m, 1H), 3.24 (s, 1H), 3.41(dd, J = 13.8, 4.2 Hz, 1H), 3.59
3
): δ 0.84-0.96 (m, 23H), 1.15-1.28 (m, 6H), 1.32 (d,
(
3
3
(m, 2H), 8.21 (s, 1H), 8.46 (s, 1H). LRMS (LC/MS) (m/z): 2007.0
(M þ H) . UV/vis: λ =254 nm. HRMS (MALDI) (m/z) calcd
max
þ
þ
for C H N O S , 2005.8637 (M þ H) ; found, 2005.8624.
9
2
133 16 28 3
(
(
d, J=6.8 Hz, 2H), 3.70 (m, 2H), 3.79 (s, 3H), 4.06 (m, 2H), 4.22
q, J=6.9 Hz, 1H), 4.37 (m, 2H), 4.55 (dd, J=5.8, 2.0 Hz, 1H),
Characterization of DUPA-DAVBH (15). The synthesis of
DUPA-DAVB hydrazide (DUPA-DAVBH) was performed as
4
Hz, 1H), 5.08 (q, J = 6.7 Hz, 1H), 5.18 (d, J = 3.4 Hz, 1H),
.60 (t, J=7.6 Hz, 1H), 4.73 (t, J=7.3 Hz, 1H), 4.79 (t, J=9.7
described for DUPA-TubH. Analytical RP-HPLC: R =6.1 min
t
[A=10 mM NH OAc (pH 7.0), and B = CH CN; solvent
4
3
1
5
8
1
.21-5.23 (m, 1H), 5.36 (dd, J=11.2, 4.2 Hz, 1H), 6.84 (d, J=
.6 Hz, 2H), 7.07 (d, J=8.6 Hz, 1H), 7.11 (dt, J=5.7, 2.1 Hz,
gradient: 10-100% B in 14 min]. H NMR (DMSO-d /D O):
6
2
δ 0.62 (m, 1H), 0.73 (t, J=7.3 Hz, 3H), 0.79 (t, J=7.3 Hz, 3H),
0.86 (d, J = 7.2 Hz, 3H), 1.04 (m, 2H), 1.16 (m, 6H), 1.31 (m,
3H), 1.57-2.16 (ms, 6H), 2.25 (m, 2H), 2.36 (m, 2H), 2.50-2.70
(ms, 4H), 2.77 (bs, 3H), 2.80-3.30 (ms, 10H), 3.53 (s, 3H), 3.71
(m, 3H), 3.98 (m, 1H), 4.10 (m, 1H), 4.18 (m, 2H), 4.42 (m, 2H),
5.60 (d, J=10.1 Hz, 1H), 5.68 (d, J=11.0 Hz, 1H), 6.20 (s, 1H),
6.22 (s, 1H), 6.43 (s, 1H), 6.91 (t, J=7.7 Hz, 2H), 7.00 (t, J=7.3
Hz, 1H), 7.03 (d, J=7.5 Hz, 1H), 7.05-7.29 (ms, 6H), 7.36 (d,
J = 7.8 Hz, 1H), 7.72 (bs, 2H), 7.86 (bs, 2H), 7.93 (s, 1H), 8.02
(s, 1H), 9.16 (s, 1H), 9.34 (s, 1H). LRMS (LC/MS) (m/z): 1932.2
H), 7.66-7.69 (m, 2H), 8.47 (d, J=5.0 Hz, 1H). LC/MS (m/z):
þ
(
M) calcd for C65
H
96
N
8
O
17
S
Characterization of DUPA-Linker I (13a). The synthesis was
2
, 1325.6; found, 1325.8.
3
3
t
performed as described elsewhere. Analytical RP-HPLC: R =
7
.8 min [A=0.1 TFA (pH 2), and B=CH CN; solvent gradient:
3
1
5
-80% B in 10 min]. H NMR (DMSO-d
6
): δ 0.93 (m, 2H), 1.08
(
m, 5H), 1.27 (m, 5H), 1.69 (m, 2H), 1.90 (m, 2H), 1.94 (m, 2H),
.10 (m, 2H), 2.24 (m, 2H), 2.62 (m, 2H), 2.78 (m, 4H), 2.88
m, 1H), 2.96 (t, J=6.8 Hz, 2H), 3.01 (m, 1H), 3.31 (dd, J=13.9,
2
(
þ
5
1
.9 Hz, 1H), 3.62 (dd, J=14.0, 5.9 Hz, 1H), 3.80 (q, J=6.1 Hz,
H), 4.07 (m, 1H, R-H), 4.37 (m, 1H, R-H), 4.42 (m, 2H,
(M þ H) . UV/vis: λmax=254 nm. HRMS (MALDI) (m/z): calcd
þ
for C93
H
124
N
Synthesis and Characterization DUPA-Cpt (16). The synthesis
15
O
26
S
2
, 1930.8283 (M þ H) ; found, 1930.8273.
þ
R-H), 4.66 (m, 1H, R-H), 7.18 (m, 10H). LC/MS (m/z): (M þ H)
calcd for C47
H
66
N
9
O
17S, 1060.4; found, 1060.2. UV/vis:
of DUPA-Cpt was performed as described for DUPA-TubH.
λmax =257 nm.
t 4
Analytical RP-HPLC: R =5.3 min [A=10 mM NH OAc (pH 7.0),