Folding of a Flexible Zwitterion in Methanol
FULL PAPER
give the desired product: 7.62 g (92%); m.p. 88 °C. 1H NMR ([D6]-
DMSO, 400 MHz): δ = 6.75 (s, 1 H), 3.30 (d, 2 H), 2.88 (m, 2 H),
1.37 (m, 13 H) ppm. 13C NMR ([D6]DMSO, 100 MHz): δ = 155.54
(Cq), 77.21 (Cq), 41.43 (CH2), 30.70 (CH2), 28.25 (CH3), 27.02
(CH2) ppm. MS (EI) = m/z 189.3 [M + H+].
Conclusions
In conclusion, we have demonstrated here that the con-
formation of a flexible linear molecule can be controlled by
using directed charge interactions between the termini of
the molecule. This however requires very efficient charge
Compound 2: Procedure C. Cbz-Val–OH: 251 mg, HCTU: 414 mg,
interactions that are strong enough even under competitive NMM: 330 µL, 1: 188 mg; yield 413 mg (98%); m.p. 193 °C. 1H
NMR ([D6]DMSO, 400 MHz): δ = 7.87 (t, 1 H), 7.33 (m, 5 H),
7.18 (d, J = 8.96 Hz, 1 H), 6.75 (t, 1 H), 5.02 (s, 2 H), 3.77 (dd, 1
H), 3.07 (m, 2 H), 2.98 (m, 2 H), 2.89 (m, 4 H), 1.91 (m, 1 H), 1.37
(s, 9 H), 0.83 (d, J = 6.84 Hz, 6 H) ppm. 13C NMR ([D6]DMSO,
100 MHz): δ = 170.60 (Cq), 136.84 (Cq), 128.03 (CH), 127.45 (CH),
127.34 (CH), 77.03 (Cq), 65.05 (CH2), 60.04 (CH), 37.96 (CH2),
29.97 (CH), 27.98 (CH3), 27.08 (CH2), 26.86 (CH2), 18.93 (CH3),
17.97 (CH3) ppm. MS (EI): m/z = 206.2 (M+ – C10H19N2O3).
solvation conditions. Using a guanidiniocarbonyl pyrrole/
carboxylate ion pair, zwitterion 10 which does not possess
any rigid or structurally biased linker was shown to adopt
a predictable and specific loop-conformation even in meth-
anol. We are currently investigating how this approach can
be used to build even larger self-assembled structures.
Compound 3: Procedure A and C. Boc-Ala–OH: 189 mg, HCTU:
414 mg, NMM: 330 µL, 2: 493 mg; yield 288 mg (50%); m.p.
177 °C. H NMR ([D6]DMSO, 400 MHz): δ = 7.87 (t, 1 H), 7.70
Experimental Section
1
General Procedure A for the Deprotection of the tBOC Group: A
solution of the corresponding protected compound (100 mg) in tri-
fluoroacetic acid (5 mL) and dichloromethane (5 mL) was stirred
for 1 h at room temperature under TLC control. After completion
of the reaction, the trifluoroacetic acid was evaporated in vacuo
yielding a slightly yellow oil. 10 mL of water were added, the solu-
tion was lyophilised and the white solid was dried in vacuo (yield:
quantitative).
(t, 1 H), 7.33 (m, 5 H), 7.17 (d, J = 8.96 Hz, 1 H), 6.76 (d, J =
7.08 Hz, 1 H), 5.02 (s, 2 H), 3.90 (m, 1 H), 3.78 (m, 1 H), 3.08 (m,
2 H), 3.00 (m, 2 H), 1.91 (m, 1 H), 1.37 (s, 13 H), 1.14 (d, J =
7.04 Hz, 3 H), 0.83 (m, 6 H) ppm. 13C NMR ([D6]DMSO,
100 MHz): δ = 170.62 (Cq), 136.84 (Cq), 128.03 (CH), 127.46 (CH),
127.34 (CH), 65.05 (CH2), 60.04 (CH), 37.88 (CH2), 29.98 (CH),
27.89 (CH3), 26.23 (CH2), 26.06 (CH2), 18.94 (CH3), 18.15 (CH3),
+
17.96 (CH3) ppm. HRMS (ESI): calculated for C25H40N4NaO6
[M + Na+]: m/z = 515.284, found 515.285.
General Procedure B for the Deprotection of the Cbz Group: A solu-
tion of the corresponding protected compound (100 mg) and 10%
Pd/C in methanol (10 mL) was hydrogenated at room temp. for
0.5 h (TLC control). The mixture was filtered through a pad of
Celite to remove the catalyst (Pd/C) and the solvent was removed
under reduced pressure. The crude product was used in the follow-
ing steps without further purification.
Compound 6: Procedure A and D. 5: 201 mg, PyBOP: 354 mg,
NMM: 224 µL, 3: 267 mg; yield 283 mg (62%); m.p. 184 °C. 1H
NMR ([D6]DMSO, 400 MHz): δ = 11.61 (br., 1 H), 10.83 (br., 1
H), 9.37 (br., 1 H), 8.63 (br., 1 H), 8.46 (d, J = 7.44 Hz, 1 H), 7.94
(t, 1 H), 7.88 (t, 1 H), 7.34 (m, 5 H), 7.17 (d, J = 8.84 Hz, 1 H),
6.83 (m, 2 H), 5.02 (s, 2 H), 4.41 (m, 1 H), 3.78 (m, 1 H), 3.04 (m,
4 H), 1.92 (m, 1 H), 1.46 (s, 9 H), 1.39 (s, 4 H), 1.28 (d, J = 7.04 Hz,
3 H), 0.83 (m, 6 H) ppm. 13C NMR ([D6]DMSO, 100 MHz): δ =
172.07 (Cq), 170.94 (Cq), 158.20 (Cq), 156.09 (Cq), 137.15 (Cq),
128.34 (CH), 127.77 (CH), 127.65 (CH), 65.37 (CH2), 60.36 (CH),
48.45 (CH), 38.22 (CH2), 30.29 (CH), 27.80 (CH3), 26.58 (CH2),
26.47 (CH2), 19.25 (CH3), 18.35 (CH3), 18.27 (CH3) ppm.
General Procedure C for Coupling of Amino Acids: A mixture of
the corresponding N-protected amino acid (1.0 mmol), HCTU
(1.0 mmol) and NMM (3.0 mmol) in DMF (5 mL) was stirred at
room temp. for 15 min. Then the corresponding amine component
(1.0 mmol) was added to the solution and the reaction mixture
stirred overnight (at room temp.). Then 30 mL of water were added
and the solution was stirred in an ice-bath for further 30 min. The
white precipitate was filtered, washed several times with water and
lyophilised to give the desired product.
HRMS (ESI): calculated for C32H46N8NaO8 [M + Na+]: m/z =
+
693.333, found 693.335.
Bis-Protected Zwitterion 9: Procedure B and D. 8: 167 mg, PyBOP:
354 mg, NMM: 224 µL, 6: 365 mg; yield 306 mg (59%); m.p.
186 °C. 1H NMR ([D3]MeOH, 600 MHz): δ = 12.74 (br., 1 H),
12.03 (br., 1 H), 9.09 (br., 1 H), 8.95 (s, 1 H), 8.90 (s, 1 H), 8.76 (s,
2 H), 8.61 (s, 1 H), 7.43 (m, 5 H), 6.90 (m, 4 H), 5.19 (s, 2 H), 4.37
(m, 1 H), 4.21 (m, 1 H), 3.19 (m, 4 H), 2.10 (m, 1 H), 1.52 (s, 9
H), 1.41 (s, 4 H), 1.30 (s, 3 H), 0.97 (d, J = 24 Hz, 6 H) ppm. 13C
NMR ([D6]DMSO, 63 MHz): δ = 172.10 (Cq), 170.72 (Cq), 160.11
(Cq), 159.14 (Cq), 158.90 (Cq), 158.47 (Cq), 136.29 (Cq), 131.03
(Cq), 128.52 (Cq), 128.10 (CH), 127.93 (CH), 124.17 (CH), 115.29
(CH), 113.89 (CH), 112.82 (CH), 65.49 (CH2), 58.08 (CH), 48.42
(CH), 38.23 (CH2), 30.54 (CH), 27.78 (CH3), 26.60 (CH2), 26.45
(CH2), 19.29 (CH3), 18.57 (CH3), 18.34 (CH3) ppm. HRMS (ESI):
General Procedure D for Coupling of the Pyrrolecarboxylic Acids 5
and 8: A solution of the pyrrole derivative 5 or 8 (0.68 mmol),
PyBOP (0.68 mmol) and NMM (2.04 mmol) in DMF (10 mL) was
stirred at room temp. for 15 min. Then the corresponding amine
component (0.68 mmol) was added and the solution was stirred at
room temp. overnight. After adding 60 mL of water the solution
was stirred in an ice-bath for another 30 min. The white precipitate
was filtered, washed several times with water and lyophilised to give
the desired product.
tert-Butyl (4-Aminobutyl)carbamate (1): A solution of 1,4-diami-
nobutane (19.33 g, 220 mmol) in chloroform (150 mL) was cooled
to 0 °C and then treated under continuous stirring with a solution
of Boc2O (9.60 g, 44 mmol) in chloroform (50 mL). The reaction
was stirred overnight at room temperature. The suspension was fil-
tered and the solution was concentrated under reduced pressure.
The colourless oil was dissolved in ethyl acetate (500 mL) and
washed twice with brine (60 mL). The aqueous phases were com-
bined and extracted once with ethyl acetate. The combined organic
layers were dried with sodium sulfate and evaporated under re-
duced pressure. The resulting oily residue was dried in vacuo to
+
calculated for C37H49N9NaO9 [M + Na+]: m/z = 786.355, found
768.356.
Zwitterion 10: Procedure B and A. Yield 75 mg (quant.); m.p.
242 °C. 1H NMR ([D6]DMSO, 400 MHz): δ = 12.74 (br., 1 H),
12.25 (br., 1 H), 11.78 (br., 1 H), 8.50 (d, J = 7.68 Hz, 1 H), 8.30
(d, J = 8.6 Hz, 1 H), 8.07 (t, 1 H), 7.93 (t, 1 H), 6.81 (br., 2 H),
6.77 (dd, 1 H), 6.72 (dd, 1 H), 4.41 (m, 1 H), 4.26 (m, 1 H), 3.06
(m, 4 H), 2.03 (m, 1 H), 1.40 (s, 4 H), 1.29 (d, J = 7.08 Hz, 3 H),
Eur. J. Org. Chem. 2007, 3326–3330
© 2007 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim
www.eurjoc.org
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