1642 Crystal Growth & Design, Vol. 10, No. 4, 2010
He et al.
Table 5. Continued
Torsion Angles (°)
C12-C7-C8-C3
C6-C7-C8-C3
N2-C3-C8-C7
C4-C3-C8-C7
N2-C3-C8-C9
C4-C3-C8-C9
C7-C8-C9-C10
C3-C8-C9-C10
C8-C9-C10-C11
-179.65(17)
1.6(3)
Cl19-C15-C16-C17
C14-C15-C16-Cl20
Cl19-C15-C16-Cl20
C15-C16-C17-C18
Cl20-C16-C17-C18
C16-C17-C18-C13
C14-C13-C18-C17
C6-C13-C18-C17
179.20(14)
179.20(14)
-0.8(2)
102.3(2)
-19.6(2)
-76.9(2)
161.20(17)
-0.4(3)
-0.2(3)
179.83(15)
1.4(3)
-1.6(3)
178.66(18)
178.82(17)
0.9(3)
In addition, the comparison of the structural difference
between enantiomers and racemates by spectra analysis such
as FTIR, Raman, or SSNMR and XRPD patterns of
racemate and enantiomer further confirms the racemate
solid nature. It is generally accepted that identical spectra
and XRPD patterns suggest a conglomerate, similar spectra
and XRPD patterns imply a pseudoracemate and different
spectra and XRPD patterns represent a racemic compound.
The XRPD pattern of sertraline racemate was diffe-
rent from that of the corresponding enantiomer shown in
Figure 9 (top). The racemate compound had peaks at the
following 2θ angles: 8.79°, 15.23°, 17.42°, 19.25°, 21.28°,
21.89°, 23.30°, 23.84°, 24.49°, 26.48°, 28.13°, 29.09°, 32.99,
whereas the enantiomer had peaks at 8.89°, 13.46°, 15.20°,
17.65°, 19.15°, 20.31, 23.25°, 23.81°, 24.85°, 25.90°, and
28.41°, 28.90°, 31.31°, 32.45°. They have some similar peaks;
however, the enantiomer has unique peaks at 13.46°, 20.31°,
25.90°, 31.31°, 32.45° and the racemate has unique peaks at
13.12°, 21.28°, 21.89°, 26.48°, and 32.99°. These values are
tabulated in Table 3 for clarity.
angle of 84.19°. The hydrogen-bonding plays a key role in
determining the crystal packing. Surprisingly, there are no
hydrogen-bonding interactions between the heterochiral
(1R,4R) molecule and (1S,4S) molecule, whereas there are
hydrogen-bonding interactions between homochiral mole-
cules. As shown in Figure 11 (left), (1R,4R) molecules are
linked to each other head to tail by hydrogen bonds, namely,
a head H of N to a tail Cl of another neighboring molecule,
which form a catemer hydrogen-bonding motif. The hydro-
˚
gen bond is relatively strong with N-Cl = 3.229 A. The
homochiral molecules are aligned and extended along the
b-axis to form an infinite hollow column viewed from the
b-axis. (1S,4S) molecules are orientated head to tail by
hydrogen bond in the same manner displayed in Figure 11
(right), and thus another homochiral column along the b-axis
is also obtained. These (1R,4R) and (1S,4S) columns are
parallel one to another and are assembled alternatively to
form a compact crystal structure favorable to the stability
of the racemate. The packing diagrams are illustrated in
Figure 12 viewed from the a, b, and c-axis, respectively.
In the crystal of enantiomer, two (1S,4S) molecules exist in
the unit cell in Figure 13 (right). The atomic-numbering
molecule is shown in Figure 13 (left). The molecule skeleton
has almost the same shape as the racemate molecule includ-
ing the methylamine group as a head part, the phenyl and
hexane ring as a central part and a tail part of chlorine-
substituted phenyl ring. The phenyl rings and cyclohexane
ring are in a well-defined arrangement. The two aromatic
planes in one molecule make an angle of 83.33°, which is
slightly different from that in the racemate. However, there
are some disorders in the methylamine head part in the
molecule. This part can adopt two orientations relative to
the central phenyl ring and cyclohexane ring, differing from
each other in the N1 position. The atomic coordinates
of N1 in conformation 1 and N1A in conformation 2
Figure 9 (bottom) exemplifies the FTIR spectra of sertra-
line racemate and enantiomer. FTIR of the racemate is
almost superimposable on that of enantiomer and the
most notable difference is at wavenumber 1365-1394 cm-1
and 3450 cm-1
.
These FTIR spectropic analyses and XPRD patterns
provide further support of the racemic compound nature
of sertraline racemate free base.
3.4. Molecular and Crystal Structure of Sertraline. The
crystal structures of both sertraline racemate and enantiomer
were obtained through X-ray crystallographic diffraction
analysis. It was confirmed that sertraline racemate existed as
a racemic compound. The structure was solved and refined
successfully in P121/n1 space group with Z=4, whereas the
structure of the sertraline enantiomer belonged to P21 space
group with Z=2. Detailed crystal structure data are sum-
marized in Table 4.
˚
are (-0.1365, -0.1738, 0.8492) A and (-0.1058, 0.2536,
0.8708) A, respectively. The head part C11, N1, and C1 in
˚
In the crystal of the racemate, two (1R,4R) and two
(1S,4S) molecules are paired and packed in crystal unit cell
to form the racemate as shown in Figure 10 (right). All
molecules have the same conformation. The atomic-
numbering molecule is shown in Figure 10 (left). The mole-
cule skeleton basically includes a head formed by the methyl-
amine group, a central part composed by a phenyl and
cyclohexane ring from C6-C12, and a tail part of a chlorine-
substituted phenyl ring from C13-Cl20. Except for a small
deviation of C4 and C5, the central phenyl ring and cyclo-
hexane ring are in one plane. The C1, N2, and C3 are in
another plane, making an angle of 82.63 with the central
plane. The tail part aromatic ring define another plane which
is almost vertical to the central plane with an inter planar
conformation 1 forms a plane making angle of 59.28° with
the central part aromatic ring plane, which are significantly
different from that of 82.63° in the racemate, whereas the
C11A, N1A, and C1A plane in conformation 2 makes an
angle of 80.42° with the central part aromatic ring plane,
which are slightly different from that of 82.63° in the
racemate. (1S,4S) molecules are also oriented head to tail
and linked by hydrogen bonds, between a head H of N to a
tail Cl of another neighboring molecule as illustrated in
˚
Figure 14. The distance of N-Cl is 3.274 A. (1S,4S) mole-
cules are aligned along the b-axis to form an infinite hollow
column in the same way as the racemate. Thus, two columns
are parallel to one another and stack to form homochiral
crystals. The packing diagram is clearly shown in Figure 15.