Journal of Natural Products
Article
solution of 20% piperidine in DMF (v/v, 3 mL) followed by agitation
for 2 × 5 min at rt. The resin was filtered, drained, and washed with
DMF (3 × 5 mL). After the incorporation of the ester bond (General
method 4), 5% formic acid was added to 20% piperidine in DMF, (v/
v/v, 3 mL), and the reaction time was modified to 2 × 1 min at rt.
amino group following General method 5. The removal of the Alloc
protecting group was performed by General method 6. The protected
peptide was cleaved from the resin using General method 7 to afford
the crude product 13a as an amorphous off-white solid (152 mg, 76%
based on resin loading). The crude side-chain protected peptide 13a
(152 mg, 0.068 mmol) was dissolved in DMF (6.8 mL) together with
BOP (150 mg, 0.34 mmol), HOAt (58 mg, 0.34 mmol), and DIPEA
(118 μL, 0.68 mmol) to reach a final peptide concentration of 10
mM. The reaction mixture was shaken at room temperature for 5 h.
α
General Method 3: Coupling of Amino Acids. The N -Fmoc
amino acid (0.4 mmol) and HCTU (157 mg, 0.38 mmol) were
dissolved in DMF (3 mL), DIPEA (174 μL, 1 mmol) was added, and
the solution was transferred to the swelled peptidyl resin (0.1 mmol).
Coupling was performed for 20 min at rt before the resin was washed
with DMF (3 × 5 mL). The reaction completion was monitored by
The crude cyclized peptide was precipitated by an addition of H O
2
(40 mL) and recovered by centrifugation. The resulting material
underwent a global deprotection using General method 8. Crude
laterocidine (1) was purified by semipreparative RP-HPLC using
Dionex UltiMate 3000 on a Phenomenex Gemini C18 110 Å, 10 ×
55
the Kaiser test.
General Method 4: On-Resin Esterification. To the swelled
α
peptidyl resin (0.1 mmol) was added a solution of N -Alloc-protected
−
1
amino acid (0.3 mmol), DIC (40 μL, 0.3 mmol), and DMAP (1.2 mg,
250 mm, 5 μm column using a gradient of 15−65% B at 1% B·min
0
.01 mmol) in DMF (3 mL). The reaction was performed for 1 h at
over 40 min, 4 mL/min at rt. Fractions were collected and analyzed
by electrospray ionization mass spectrometry (ESI-MS) and analytical
RP-HPLC. Fractions identified with the correct m/z were combined
and lyophilized to afford 1 as a white amorphous solid (59.6 mg, 36%
rt, and the resin was washed with DMF (3 × 5 mL). The reaction
completion was monitored by RP-HPLC/MS analysis on a small
sample of cleaved peptide.
General Method 5: Coupling of The Lipid Tail. To the
peptidyl resin (0.1 mmol) was added a solution of fatty acid (0.15
mmol), HATU (46 mg, 0.12 mmol), and DIPEA (105 μL, 0.6 mmol)
in DMF (3 mL). The resin was agitated for 1 h at rt and drained
before being washed with DMF (3 × 5 mL). The coupling
R
min; NMR, Table S2; HRMS (ESI+) m/z 535.6249 (calcd for
3
+
20.5
D
[C H N O +3H] , 535.6243).; [α] −14.9 (c 0.067, MeOH)
7
8
113 19 18
(a literature value was not reported).
Synthesis of Brevicidine (2). Fmoc-Gly-OH (89 mg, 0.3 mmol)
55
completion was confirmed by the Kaiser test.
was loaded onto 2-chlorotrityl chloride polystyrene resin (112 mg,
−
1
General Method 6: Removal of Allyl Ester and Allylox-
ycarbonyl (Alloc) Protecting Groups. The peptidyl resin (0.1
mmol) was swelled in CH Cl before the addition of a solution of
0.89 mmol·g , 0.1 mmol) following General method 1. The loading
56
efficiency was 67% as determined by an Fmoc release. The removal
α
2
2
of the N -Fmoc protecting group was performed using General
Pd(PPh ) (29 mg, 0.025 mmol) and PhSiH (123 μL, 1 mmol) in
method 2. A solid-phase peptide synthesis was performed by coupling
Fmoc-Ile-OH, Fmoc-Thr-OH, and Fmoc-Trp-OH following General
method 3. Alloc-Ser(tBu)−OH (73.5 mg, 0.3 mmol) was coupled to
the Thr side-chain hydroxyl group using General method 4.
Subsequent Fmoc-removals were performed using 5% formic acid
and 20% piperidine in DMF (v/v/v) as described in General method
2. A peptide elongation was continued using Fmoc-D-Orn(Boc)−OH,
Fmoc-Orn(Boc)−OH, Fmoc-D-Trp(Boc)−OH, Fmoc-D-Tyr(tBu)−
OH, and Fmoc-D-Asn(Trt)−OH. (R,S)-4-Methylhexanoic acid (26
μL, 0.15 mmol) was coupled to the N-terminal amino group following
General method 5. The removal of the Alloc protecting group was
performed by General method 6. The resin was then split into four
portions, and the following steps were performed taking 0.017 mmol
of the peptidyl resin. The protected peptide was cleaved from the
resin using General method 7 to afford the crude product 13b, which
was dissolved in DMF (1.7 mL) to achieve the final concentration of
10 mM. PyBOP (8.8 mg, 0.085 mmol) and DIPEA (14.8 μL, 0.085
mmol) were added to effect cyclization, and the reaction was stirred
for 5 h at rt. To the crude reaction mixture, water was added such
3
4
3
CH Cl (3 mL). The resin was shaken at rt for 3 h and filtered before
2
2
being washed with CH Cl (3 × 5 mL), a solution of 0.5% sodium
2
2
diethyldithiocarbamate in DMF (m/v, 5 mL, 3 × 1 min), and DMF
(
3 × 5 mL).
General Method 7: Cleavage. The resin-bound peptide was
washed with DMF (3 × 5 mL) and CH Cl (3 × 5 mL) before it was
2
2
dried in vacuo. A solution of 20% HFIP in CH Cl (v/v, 10 mL) was
2
2
added, and cleavage was performed for 1 h at rt. After the filtration,
the resin was washed with CH Cl (3 × 5 mL), and the combined
2
2
filtrates were concentrated under a stream of N . The crude protected
2
peptide was dissolved in tert-butanol (10 mL) and lyophilized.
General Method 8: Global Deprotection. The cyclized peptide
was treated with a solution of TFA/H O/TIPS (95:2.5:2.5, v/v/v, 10
2
mL) for 1 h at rt and concentrated under a stream of N . After a
2
precipitation by the addition of cold Et O (45 mL), the crude peptide
2
was recovered by centrifugation and washed with cold Et O (2 × 45
2
mL) before lyophilization.
General Method 9: Resin Mini Cleavage. The peptidyl resin
(
1−5 mg) was treated with a solution of TFA/H O/TIPS (95:2.5:2.5,
that, for every 1 mL of the reaction mixture, 39 mL of H O was
2
2
v/v/v, 1 mL) for 30 min at rt and concentrated under a stream of N .
added, and the resulting supernatant centrifuged. The water layer was
2
After a precipitation by the addition of cold Et O (10 mL), the crude
decanted, and the obtained precipitate was redissolved in H O/
2
2
peptide was recovered by centrifugation and washed with cold Et O
MeCN (1:1) + 0.1% TFA and lyophilized. The resulting material
underwent a global deprotection using General method 8. Crude
brevicidine (2) was purified by semipreparative RP-HPLC using
Dionex UltiMate 3000 on a Phenomenex Gemini C18 110 Å, 10 ×
250 mm, 5 μm column (3 mL/min) using a gradient of 5−95% B at
3% B/min over 65 min, 4 mL/min at rt. Fractions were collected and
analyzed by ESI-MS and analytical RP-HPLC. Fractions identified
with the correct m/z were combined and lyophilized to afford 2 as a
white solid (2.6 mg, 10% overall yield (based on resin split at 0.017
mmol scale), >96% purity); tR 34.7 min; NMR, Table S3; HRMS
2
(2 × 10 mL) before lyophilization. The resulting peptide was
obtained as a white powder and used to analyze the progress of on-
resin reactions.
Synthesis of Laterocidine (1). Fmoc-Gly-OH (89 mg, 0.3
mmol) was loaded onto 2-chlorotrityl chloride polystyrene resin (118
−
1
mg, 0.85 mmol.g , 0.1 mmol) following General method 1. The
56
loading efficiency was 89% as determined by Fmoc release. The
α
removal of the N -Fmoc protecting group was performed using
General method 2. A solid-phase peptide synthesis was performed by
coupling Fmoc-Asn(Trt)−OH, Fmoc-Ile-OH, Fmoc-Thr-OH, and
Fmoc-Trp(Boc)−OH following General method 3. Alloc-Gly-OH
2
+
(ESI+) m/z 760.4072 (calcd for [C H N O +2H] , 760.4064);
7
4
106 18 17
[α]2 + 6.9 (c 0.058, MeOH) (a literature value was not reported).
0.1
D
(
48 mg, 0.3 mmol) was coupled to the Thr side-chain hydroxyl group
Minimum Inhibitory Concentration (MIC) Assay. Staph-
ylococcus aureus ATCC 29213 and E. coli ATCC 25922 were grown
in a cation-adjusted Mueller Hinton (MH) broth at 37 °C with
shaking (200 rpm). MIC assays were performed in accordance with
using General method 4 and repeated twice. Subsequent Fmoc-
removals were performed using 5% formic acid and 20% piperidine in
DMF (v/v/v) as described in General method 2. A peptide
elongation was continued using Fmoc-D-Orn(Boc)−OH, Fmoc-Gly-
OH, Fmoc-Orn(Boc)−OH, Fmoc-D-Orn(Boc)−OH, Fmoc-D-Trp-
57
the CLSI recommended protocol. Briefly, a twofold dilution series
of the test compounds (from 64 to 0.25 μM, final) was prepared in
triplicate in polypropylene 96-well plates, using cation-adjusted MH
media. Cultures of bacteria grown for 8 h were diluted accordingly in
(
Boc)−OH, Fmoc-D-Tyr(tBu)−OH, and Fmoc-D-Ser(tBu)−OH.
Isononanoic acid (26 μL, 0.15 mmol) was coupled to the N-terminal
H
J. Nat. Prod. XXXX, XXX, XXX−XXX