H. Wada et al. / Tetrahedron Letters 53 (2012) 1720–1724
1723
12. Typical procedure for amination (Table 1, Product 4c):
(2-Chloro-5-fluoropyrimidin-4-yl)isobutylamine:
In conclusion, this work highlights the preparation of novel
5-fluoropyrimidine-4-carboxamide analogues 2 by use of a meth-
oxy protecting group. This methodology avoids nucleophilic
decomposition due to highly electron-deficient heterocycles and
has the potential to facilitate the synthesis of novel 5-fluoropyrim-
idine analogues. The biological evaluation of these compounds as
kinase inhibitors is currently in progress.
To a stirred solution of 2,4-dichloro-5-fluoropyrimidine (8.0 g, 48 mmol) and
isobutylamine (3.5 g, 48 mmol) in EtOH (50 ml) was added dropwise DIEA
(15.4 g, 120 mmol) and the mixture was stirred at room temperature for
30 min. At the end of the reaction, the mixture was evaporated under reduced
pressure to remove the solvent. The residue was diluted with CH2Cl2 (100 ml),
washed with water (60 mL) and brine (60 mL), dried over Na2SO4 and
concentrated under reduced pressure to yield 9.4 g (96% yield) of the
product as a light yellow oil.
1H NMR (400 MHz, CDCl3) d 7.88 (d, J = 2.8 Hz, 1H), 5.29 (br s, 1H), 3.37 (t,
J = 6.4 Hz, 2H), 1.97 (m, 1H), 1.05 (d, J = 6.8 Hz, 6H).
Acknowledgements
13. Typical procedure for carboxylation and hydrolysis (Table 1, Product 5cc):
5-Fluoro-4-isobutylaminopyrimidine-2-carboxylic acid
We are grateful to the department of Analytical Sciences at WuXi
AppTec Co., Ltd for their assistance in NMR and MS studies. We also
thank Teyrnon Jones from AstraZeneca Charnwoodand Mark Furber,
Cristina Gardelli, Peter Sjö and John Steele from AstraZeneca
Mölndal for helpful suggestions regarding this manuscript and
Matthew Perry from the Department of Chemistry, AstraZeneca
Mölndal for helpful suggestions regarding library synthesis.
A
mixture of (2-chloro-5-fluoropyrimidin-4-yl)isobutylamine (10.9 g,
54.0 mmol), Pd(dppf)Cl2 (1.1 g, 1.1 mmol) and Et3N (13.6 g, 135.0 mmol) in
MeOH (300 ml) was heated at 140 °C under 3 MPa of carbon monoxide
pressure for 16 h. At the end of the reaction, the mixture was cooled to room
temperature and then evaporated under reduced pressure to remove the
solvent. The residue was purified by flash column chromatography on silica
gel, eluting with 10% EtOAc/PE, yielding 10.4 g of the ester product as a white
solid. The obtained ester was then treated with NaOH (1.9 g, 48.5 mmol) in 50%
MeOH/H2O (100 ml) at room temperature for 1 h. At the end of the reaction,
MeOH was removed by evaporation. The aqueous residue was washed with
MTBE (50 ml), then acidified to pH = 3–4 with conc. HCl. The resulting
precipitate was collected by filtration and dried to give 8.6 g (76% yield) of
the acid product as a white solid.
Supplementary data
1H NMR (400 MHz, DMSO-d6) d 8.15 (d, J = 3.6 Hz, 1H), 7.88 (br s, 1H), 3.21 (t,
J = 6.4 Hz, 2H), 1.91 (m, 1H), 0.86 (d, J = 6.8 Hz, 6H).
Supplementary data (representative experimental procedures
and compound characterisation data) associated with this article
14. Typical procedure for amide formation (Table 1, Product 1cc):
5-Fluoro-4-isobutylaminopyrimidine-2-carboxylic acid phenylamide
A mixture of 5-fluoro-4-isobutylaminopyrimidine-2-carboxylic acid (43.0 mg,
0.20 mmol), HOBt (13.5 mg, 0.10 mmol), EDC (46.1 mg, 0.24 mmol) and Et3N
(60.6 mg, 0.60 mmol) in DMF (2 ml) was stirred at room temperature for
10 min. Phenylamine (22.3 mg, 0.24 mmol) was added and the reaction
mixture was heated at 50 °C for 6 h. At the end of the reaction, the solvent
was removed by evaporation and the residue was purified by preparative TLC
to give 46.6 mg (81% yield) of the product as a colorless oil.
References and notes
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18. Typical procedure for displacement with MeO (compound 15):
2-Chloro-5-fluoro-4-methoxypyrimidine
7. (a) Finlay, M. R. V.; Acton, D. G.; Andrews, D. M.; Barker, A. J.; Dennis, M.; Fisher,
E.; Graham, M. A.; Green, C. P.; Heaton, D. W.; Karoutchi, G.; Loddick, S. A.;
Morgentin, R.; Roberts, A.; Tucker, J. A.; Weir, H. M. Bioorg. Med. Chem. Lett.
2008, 18, 4442; (b) Jones, C. D.; Andrews, D. M.; Barker, A. J.; Blades, K.; Byth, K.
F.; Finlay, M. R. V.; Geh, G.; Green, C. P.; Johannsen, M.; Walker, M.; Weir, H. M.
Bioorg. Med. Chem. Lett. 2008, 18, 6486; (c) Anderson, M.; Andrews, D. M.;
Barker, A. J.; Brassington, C. A.; Breed, J.; Byth, K. F.; Culshaw, J. D.; Finlay, M. R.
V.; Fisher, E.; Gingell, H. H. J.; Green, C. P.; Heaton, D. W.; Nash, I. A.;
Newcombe, N. J.; Oakes, S. E.; Pauptit, R. A.; Roberts, A.; Stanway, J. J.; Thomas,
A. P.; Tucker, J. A.; Weir, H. M. M. Bioorg. Med. Chem. Lett. 2008, 18, 5487; (d)
Jones, C. D.; Andrews, D. M.; Barker, A. J.; Blades, K.; Daunt, P.; East, S.; Geh, C.;
Graham, M. A.; Johnson, K. M.; Loddick, S. A.; McFarland, H. M.; McGregor, A.;
Moss, L.; Rudge, D. A.; Simpson, P. B.; Swain, M. L.; Tam, K. Y.; Tucker, J. A.;
Walker, M. Bioorg. Med. Chem. Lett. 2008, 18, 6369.
8. Wang, T.; Lamb, M. L.; Scott, D. A.; Wang, H.; Block, M. H.; Lyne, P. D.; Lee, J. W.;
Davies, A. M.; Zhang, H.; Zhu, Y.; Gu, F.; Han, Y.; Wang, B.; Mohr, P. J.; Kaus, R. J.;
Josey, J. A.; Hoffmann, E.; Thress, K.; MacIntyre, T.; Wang, H.; Omer, C. A.; Yu, D.
J. Med. Chem. 2008, 52, 4672.
9. Liu, M.; Wang, S.; Clampit, J. E.; Gum, R. J.; Haasch, D. L.; Rondinone, C. M.;
Trevillyan, J. M.; Abad-Zapatero, C.; Fry, E. H.; Sham, H. L.; Liu, G. Bioorg. Med.
Chem. Lett. 2007, 17, 668.
To a stirred solution of 2,4-dichloro-5-fluoropyrimidine (30.0 g, 180.7 mmol) in
MeOH (200 ml) cooled to 0 °C was slowly added NaOMe (19.5 g, 361.4 mmol).
The mixture was stirred at room temperature for 12 h. At the end of the
reaction, the solvent was removed by evaporation. The residue was partitioned
between CH2Cl2 (200 ml) and H2O (200 ml). The CH2Cl2 layer was washed with
brine (200 ml), dried over Na2SO4 and concentrated in vacuo to give 22.0 g
(75% yield) of the product as a white solid.
1H NMR (400 MHz, CDCl3) d 8.20 (d, J = 2.4 Hz, 1H), 4.11 (s, 3H).
19. Typical procedure for amination with an aniline (compound 16a):
(5-Fluoro-4-methoxypyrimidin-2-yl)phenylamine
To
a stirred solution of 2-chloro-5-fluoro-4-methoxypyrimidine (16.0 g,
98.8 mmol) and phenylamine (13.8 g, 141.8 mmol) in 1,4-dioxane (500 ml)
was added Cs2CO3 (97.8 g, 296.3 mmol) followed by Pd2(dba)3 (2.7 g,
2.9 mmol) and BINAP (3.1 g, 4.9 mmol) under N2. The mixture was heated at
reflux for 12 h. On completion, the mixture was filtered to remove the
inorganic salts and the filtrate was partitioned between CH2Cl2 (500 ml) and
H2O (500 ml). The CH2Cl2 layer was washed with brine (500 ml), dried over
NaSO4 and concentrated in vacuo. The residue was purified by flash column
chromatography on silica gel, eluting with 5% EtOAc/PE, to afford 13.0 g (63%
yield) of the product as a yellow solid.
1H NMR (400 MHz, CDCl3) d 8.07 (d, J = 2.8 Hz, 1H), 7.61 (d, J = 8.0 Hz, 2H), 7.34
(m, 2H), 7.16 (br s, 1H), 7.07 (m, 1H), 4.06 (s, 3H).
20. Typical procedure for amination with an aliphatic amine (compound 16c):
(5-Fluoro-4-methoxypyrimidin-2-yl)isobutylamine
10. (a) Lum, C.; Kahl, J.; Kessler, L.; Kucharski, J.; Lundström, J.; Miller, S.;
Nakanishi, H.; Pei, Y.; Pryor, K.; Roberts, E.; Sebo, L.; Sullivan, R.; Urban, J.;
Wang, Z. Bioorg. Med. Chem. Lett. 2008, 18, 3578; (b) Tavares, F. X.; Boucheron, J.
A.; Dickerson, S. H.; Griffin, R. J.; Preugschat, F.; Thomson, S. A.; Wang, T. Y.;
Zhou, H. J. Med. Chem. 2004, 47, 4716.
To
a stirred solution of 2-chloro-5-fluoro-4-methoxypyrimidine (10.0 g,
61.7 mmol) and isobutylamine (6.8 g, 92.6 mmol) in MeCN (200 ml) was
added DIEA (11.9 g, 92.6 mmol). The mixture was stirred at 80 °C for 12 h. At
the end of the reaction, the resulting mixture was cooled and partitioned
11. Kalgutkar, A. S.; Bauman, J. N.; McClure, K. F.; Aubrecht, J.; Cortina, S. R.;
Paralkar, J. Bioorg. Med. Chem. Lett. 2009, 19, 1559.